Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2306 ATGCTGCGTCTTCAATGGCTTTCTTCTTCCTTGCTTCCGCCATTAAACCCTGAGCTCTCACCAGAACCCTGTTTGAACCGCAGACTATGTACCCTCAACTCCTATCGTCCACTCCTCACTCTCACCACTACACGAAAATCATCTCCAAAATGTCAATACTCATGGAACACGCAGCAGCAGCAACCGCCCTTCGAACCAGGCTCTCAGGCCGATTCATTTTCGCCACAAACTCGCGCCGGAGTTGCTGCAGCATTGCCACCAAGGTTTTTTGTCGGTCATTCGATATACAAAGGGAAGGCTGCCCTTACAGTTGAGCCTAGACCACCAGAGTTTACACCTCTAGATTCAGGAGCGTTCAAAATATCCAAGGAAGGATTTGTATTACTTCAGTTTGCCCCTGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTTATTGCTGATTACTATTCCACAGGTTCCATATTTTGCGTCTTAGATGTGTGGAAAAGTAGTATCATTTCCATGATGGAGAAGATGATATTAAAAATACTAAGGCATGTATTCTCATTATCAGTGACAGAATTGGGAAGTCTAGTTGCCCTTGGCCCGCGGGAGTCTTGTGAATTTTTTCACGATCCCTATAAGGGAAAGAGTGATGAAGGGAAGGTCAGAAAGATACTAAAAGTGGAGCCTCTTCCGGATGGGTCGGGCCATTTCTTCAATCTCAGCGTTCAGAACAAGCTAATCAACATGGATGAGAGCATTTATATTCCCATCACCAAAGCAGAGTATACTGTACTTGTTGAGGCTTTCAAGTTTATCTTGCCGCACCTCATGGGTTGGCATACGATTGCAAACACCATCATGAGGCCTGAAGATAGCAGCCGAGTAAATAACGCCAATCCTAGATATGGGGGTGACTTTGAATGGAGCAGATAG 927 45.42 MLRLQWLSSSLLPPLNPELSPEPCLNRRLCTLNSYRPLLTLTTTRKSSPKCQYSWNTQQQQPPFEPGSQADSFSPQTRAGVAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISKEGFVLLQFAPAAGVRQYDWSRKQVIADYYSTGSIFCVLDVWKSSIISMMEKMILKILRHVFSLSVTELGSLVALGPRESCEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINMDESIYIPITKAEYTVLVEAFKFILPHLMGWHTIANTIMRPEDSSRVNNANPRYGGDFEWSR 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 41953445 41957137 + Maker00025166 Lcy13g2306 652611

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2306 308 SUPERFAMILY ssDNA-binding transcriptional regulator domain 87 149 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy13g2306 308 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 40 308 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Lcy13g2306 308 Pfam Whirly transcription factor 95 149 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Lcy13g2306 308 Pfam Whirly transcription factor 181 265 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Lcy13g2306 308 MobiDBLite consensus disorder prediction 50 76 - -
Lcy13g2306 308 Gene3D Transcriptional Coactivator Pc4; Chain A 81 173 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy13g2306 308 Gene3D Transcriptional Coactivator Pc4; Chain A 174 289 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy13g2306 308 SUPERFAMILY ssDNA-binding transcriptional regulator domain 181 308 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2306 K26559 - - csv:101203474 444.891
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2306 Lcy-Chr13:41953445 Lcy9g0364 Lcy-Chr9:10101042 6.27E-37 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy13g2306 . 67 309 Whirly Transcription Factor Family AT1G14410 64.2 2.4e-85 312.8
Lcy9g0364 . 585 744 Whirly Transcription Factor Family AT1G71260 66.9 6.1e-59 224.9
Lcy13g2306 . 59 309 Whirly Transcription Factor Family AT2G02740 63.1 1.6e-84 310.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007539 1 2 0 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19470 None None None None Lcy TF