Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2306 ATGCTGCGTCTTCAATGGCTTTCTTCTTCCTTGCTTCCGCCATTAAACCCTGAGCTCTCACCAGAACCCTGTTTGAACCGCAGACTATGTACCCTCAACTCCTATCGTCCACTCCTCACTCTCACCACTACACGAAAATCATCTCCAAAATGTCAATACTCATGGAACACGCAGCAGCAGCAACCGCCCTTCGAACCAGGCTCTCAGGCCGATTCATTTTCGCCACAAACTCGCGCCGGAGTTGCTGCAGCATTGCCACCAAGGTTTTTTGTCGGTCATTCGATATACAAAGGGAAGGCTGCCCTTACAGTTGAGCCTAGACCACCAGAGTTTACACCTCTAGATTCAGGAGCGTTCAAAATATCCAAGGAAGGATTTGTATTACTTCAGTTTGCCCCTGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTTATTGCTGATTACTATTCCACAGGTTCCATATTTTGCGTCTTAGATGTGTGGAAAAGTAGTATCATTTCCATGATGGAGAAGATGATATTAAAAATACTAAGGCATGTATTCTCATTATCAGTGACAGAATTGGGAAGTCTAGTTGCCCTTGGCCCGCGGGAGTCTTGTGAATTTTTTCACGATCCCTATAAGGGAAAGAGTGATGAAGGGAAGGTCAGAAAGATACTAAAAGTGGAGCCTCTTCCGGATGGGTCGGGCCATTTCTTCAATCTCAGCGTTCAGAACAAGCTAATCAACATGGATGAGAGCATTTATATTCCCATCACCAAAGCAGAGTATACTGTACTTGTTGAGGCTTTCAAGTTTATCTTGCCGCACCTCATGGGTTGGCATACGATTGCAAACACCATCATGAGGCCTGAAGATAGCAGCCGAGTAAATAACGCCAATCCTAGATATGGGGGTGACTTTGAATGGAGCAGATAG 927 45.42 MLRLQWLSSSLLPPLNPELSPEPCLNRRLCTLNSYRPLLTLTTTRKSSPKCQYSWNTQQQQPPFEPGSQADSFSPQTRAGVAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISKEGFVLLQFAPAAGVRQYDWSRKQVIADYYSTGSIFCVLDVWKSSIISMMEKMILKILRHVFSLSVTELGSLVALGPRESCEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINMDESIYIPITKAEYTVLVEAFKFILPHLMGWHTIANTIMRPEDSSRVNNANPRYGGDFEWSR 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 41953445 41957137 + Maker00025166 Lcy13g2306 652611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2306 308 SUPERFAMILY ssDNA-binding transcriptional regulator domain 87 149 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy13g2306 308 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 40 308 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Lcy13g2306 308 Pfam Whirly transcription factor 95 149 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Lcy13g2306 308 Pfam Whirly transcription factor 181 265 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Lcy13g2306 308 MobiDBLite consensus disorder prediction 50 76 - -
Lcy13g2306 308 Gene3D Transcriptional Coactivator Pc4; Chain A 81 173 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy13g2306 308 Gene3D Transcriptional Coactivator Pc4; Chain A 174 289 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy13g2306 308 SUPERFAMILY ssDNA-binding transcriptional regulator domain 181 308 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2306 Lcy-Chr13:41953445 Lcy9g0364 Lcy-Chr9:10101042 6.27E-37 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19470 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2306 K26559 - csv:101203474 444.891