Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2308 ATGGACTTCACAGTTCTAAATTCAGAGTTGTGTTCTATCAAAAGTGATTCCATGGCCGTCAAGTGCATAAAGAGACGGCGGAGAAGTGCTTCTTCTTCCTCCGCAGTTGCAGATGATCAGCCACATAAGTCAGTGGCAGATCAACCCACCGCCACGAAAAGAAGCTCCAAGTTTCGTGGAGTTAGCAGGCATCGATGGACGGGACGATTCGAAGCTCATTTATGGGACAAAGGGTCTTGGAATCCAACACAAAGGAAGAAGGGAAAGCAAGGAGCTTATGATGAAGAAGAATCAGCTGCCAGAGCATATGACTTGGCTGCACTCAAGTACTGGGGAACATCAACTTTCACTAATTTCCCGGTATCTGACTATGAGAAAGAAATTAAAATAATGAAAACTGTGACAAAGGAAGAATACTTGGCTACTTTAAGAAGAAGAAGCAGTGGTTTCTCGAGAGGTGTATCCAAATATCGAGGAGTCGCAAGGCACCATCACAATGGGAGGTGGGAAGCAAGAATAGGAAGAGTATTTGGGAACAAGTATCTGTACCTTGGAACCTATAGTACACAAGAGGAGGCGGCTCGGGCATACGACATAGCAGCGATAGAATACCGAGGGATAAACGCAGTGACCAACTTTGAGCTCAGCAGTTACATAAGATGGCTTAAACCCCAACAGGAAAAGCCTAATTTTTCCCCACCATTATTATTGTCATCTAATTATAATCAGCACTTTGTTGATCCTATTCCTAATCCTATGATGATGATGTTCCAACAACAAGATCCAATAATAATCCCACAAAGTAGAAGCTGTAGTAATAGTAGCAGCTCTACCACAGCCCTGGGCCTCCTCCTCAAGTCCTCCCTCTTCAAACAACTTCTTCAGAAGAATGTTGATCTCAATAATAATAATGTCAATGGAGATGTCCAACCTCAAGAGGAAGACCTTTCTGATCATCCTAATCCCTACTTGAACTTGCACCAACCAACCAACACCTTCTCTCTTCCTCTCCATTTTCATTGCTAA 1026 43.27 MDFTVLNSELCSIKSDSMAVKCIKRRRRSASSSSAVADDQPHKSVADQPTATKRSSKFRGVSRHRWTGRFEAHLWDKGSWNPTQRKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFPVSDYEKEIKIMKTVTKEEYLATLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFELSSYIRWLKPQQEKPNFSPPLLLSSNYNQHFVDPIPNPMMMMFQQQDPIIIPQSRSCSNSSSSTTALGLLLKSSLFKQLLQKNVDLNNNNVNGDVQPQEEDLSDHPNPYLNLHQPTNTFSLPLHFHC 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 41963891 41965987 + Maker00025308 Lcy13g2308 652613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2308 341 SUPERFAMILY DNA-binding domain 56 122 IPR016177 GO:0003677(InterPro)
Lcy13g2308 341 ProSiteProfiles AP2/ERF domain profile. 156 214 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g2308 341 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 44 229 - -
Lcy13g2308 341 FunFam AP2-like ethylene-responsive transcription factor 155 216 - -
Lcy13g2308 341 SUPERFAMILY DNA-binding domain 155 215 IPR016177 GO:0003677(InterPro)
Lcy13g2308 341 CDD AP2 155 216 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g2308 341 SMART rav1_2 57 126 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g2308 341 SMART rav1_2 156 220 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g2308 341 MobiDBLite consensus disorder prediction 29 60 - -
Lcy13g2308 341 CDD AP2 56 122 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g2308 341 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g2308 341 PRINTS Ethylene responsive element binding protein signature 196 216 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g2308 341 Gene3D AP2/ERF domain 155 216 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g2308 341 Gene3D AP2/ERF domain 56 122 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g2308 341 ProSiteProfiles AP2/ERF domain profile. 57 120 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g2308 341 MobiDBLite consensus disorder prediction 29 56 - -
Lcy13g2308 341 Pfam AP2 domain 56 112 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g2308 341 Pfam AP2 domain 155 206 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2308 Lcy-Chr13:41963891 Lcy7g0538 Lcy-Chr7:4770610 1.02E-93 dispersed
Lcy13g2308 Lcy-Chr13:41963891 Lcy10g0392 Lcy-Chr10:8243982 3.45E-111 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19471 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2308 - - - 0.0