Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0015 ATGGCTGCAGAACCAGCAGCTTGCCATATGAAATTCCTTCTCGCCTCTCTAACGCTTGCGCTGCTCCTCCTTCCTTGCGTCTCCTCCCACTCTCTGTCCCTCAGGCTCAAGGCACAAGCTTCTCTTCTGGTTTCCATCAAACAGTCTTTTGATCAACCCACTCCCCTTCTCCTGGACTGGAATGCTTCAAATTACTCCTCCCTCTGCTCTTGGACTGGAATTCAATGCGATGACACGAACAGATCACTGGTGTCGCTCGACATTTCCAATTTCAACATCTCCGGGAGCTTCCCCCCTCTAATTCACAAGCTAACCAAGCTTCGCTCTCTTAACATTTCCAACAATCAGTTCAGCGGACAACTCCCCTGGGAGTTTTCTCAGCTGAAGCTGCTGCAGGTTTTTGATGCTTACAACAACAATTTCACTGGGCCGCTCCCCACAGGCGTCCCTCAACTTCCCAGTCTAAAGCACTTAAATCTTGGTGGGAATTTCTTCAGCGGTGGAATCCCTCGGAGCTATGCTGATATGGGGAAGCTCACTTTTCTGTCGCTTGCCGGCAATGAGTTGAGCGGTCCCATTCCCAGTGAGCTCGGTAATCTTACCAATCTTCAGAAGCTTTATTTGGGATACTTCAATGAGTTTGAGGGTGGAATACCCTCTCAACTCGGAAAACTTATGAATTTGAATCATCTCGACCTCGCCAGTTGTGGTTTACGAGGTCCAATCCCACCCGAGTTGGGGAACCTCAACAAGTTAGACACTCTCTTCTTGCAGACAAATCAGCTCACTGGTTCAATTCCTCCTCAATTAGGCAACTTGAGCAGCTTGGTTTCGCTTGACCTCTCCAACAACGAGTTAACAGGAGAGATCCCCCTCGAATTTGCAAACCTCCGCCAGCTTTCGCTCTTGAACCTATTCATCAACAAGTTTCATGGAGAGATTCCTCATTTTCTGGCCAATCTTCCCAAGTTGGAGGTTTTGAAGGTGTGGCAAAATAACTTCACAGGAGCAATTCCAGCAAAGCTAGGTGAGAATGGGAGGCTGACGGAGCTTGACTTGTCCACCAACAAGCTCACAGGACTGGTCCCAGAGCGTCTGTGCTTGGGAGGAAGGCTGAGGATCTTGATTTTACTGAACAATTTTCTGTTTGGGGCTGTGCCACGTGATCTGGGGCGATGCGAGACGCTTGTAAGAGTTCGAATGGGTCAGAACTATTTGACGGGATCAATCCCAGAGGGGCTGCTTTACTTGCCACAGCTCTCCCTTATGGAACTGCAGAACAACTACCTGAGCGGACCCCTTCCACAAGACATGCGCCCACTCCCATCCAAACTCGGCCTGCTAAACCTTTCCAACAATCGCTTCTCTGGATCCCTTCCCACCTCCATTGGGAACTTCACATACTTGCAGAATCTGCTTTTGAGAGGAAACCATTTCTCCGGGGACATTCCTTTTGAAATAGGCAAGCTGCGAAATCTTCTCAAGCTAGACATGAGCAGAAACAACTTCTCCGGTAGAATCCCGCCTGAATTGGGTACTTGTGTCTCCCTCACTTACCTGGATTTGAGCCTCAATCAGCTAACCTCTCCAATCCCAGTTCAAATCTCGCAGATTCGCATCTTAAATTATCTAAACTTGTCTTGGAACCATCTGAACCAGAGCCTTCCCAAGGAAATTGGGTCCATAAAGAGCTTGACCTGTGCGGACTTTTCCCACAATAACTTGTCTGGTCCTATACCCGAAACTGGGCAGTTTTTACTCTTCAATTCCACATCCTTCGTGGGCAACCCTCAACTGTGTGGATCCTCGTTGAATCCCTGCAACCAGTCAGCATCAAAGTCTCAAACCCCAACAGGCGCCAATTCCAAAGCTGTTGGGAAATACAAGCTTGTGTTTGCGTTGGGACTATTGATATGTTCGGTGATATTTGCAGCTCTGGCAATCGTTCAGACAAGGAAGGCGAAGAAGAAATCAAGTTCGTGGAAGCTAGCAGCATTCCAGAAGCTGGAATTTGGAAGCAAGGACATCATAGAGTGCATAAAAGAGAACAACATAATTGGAAAAGGTGGAGCTGGAATTGTGTACAAAGGAATCATGCCAAGTGGAGAACAAGTAGCCATAAAAAAGCTGTTGGCCATAAACAAGGGATCCTCCCACGACAACGGTCTGTCGGCGGAGATACAGACGCTGGGCAAAATCCGGCATAGGAACATCGTGAGATTGCTTGCATTTTGCTCGAATAAGCAGACGAACCTGCTGGTGTACGAGTACATGCCCAATGGAAGTTTAGGAGAAGTTCTCCATGGGAAGAGGGGTTGTTGTCTAAAATGGGGAACCAGGCTGAAGATAGCTATAGAAGCAGCCAAAGGGCTTTGCTATTTGCACCATGACTGTTCGCCGCTCATAATCCATAGGGATGTCAAGTCCAACAACATTTTGCTCAACTCAGATTTCGAGGCTCATGTAGCGGATTTCGGGTTGGCCAAGTTCTTGCAAGACAACGGAACATCGGAGTGCATGTCTGTCATTGCCGGTTCTTATGGGTATATTGCTCCAGAATATGCCTACACATTAAAGGTGGATGAAAAAAGTGATGTTTACAGTTTTGGAGTGGTGTTGCTGGAGCTTATAACAGGACGAAAGCCTGTGGGCAATTTTGGGGAAGATGGTCTAGACATTGTTCAATGGACTAAGATTCAAACCAACTCTACGAAAGAAGGAGTTGTTAAGATACTGGATCAAAGGTTAAGTAACATACCAATAAATGAAGCAAAGCAAGTATTTTTTGTTGCTATGTTATGCGTTCAAGAACACAGCGTGGAGCGGCCAACAATGAGAGAAGTGCTTCAAATGCTTGCACAAGCCCACCAACCAAATACCTTCCACATGCATTGA 2895 47.15 MAAEPAACHMKFLLASLTLALLLLPCVSSHSLSLRLKAQASLLVSIKQSFDQPTPLLLDWNASNYSSLCSWTGIQCDDTNRSLVSLDISNFNISGSFPPLIHKLTKLRSLNISNNQFSGQLPWEFSQLKLLQVFDAYNNNFTGPLPTGVPQLPSLKHLNLGGNFFSGGIPRSYADMGKLTFLSLAGNELSGPIPSELGNLTNLQKLYLGYFNEFEGGIPSQLGKLMNLNHLDLASCGLRGPIPPELGNLNKLDTLFLQTNQLTGSIPPQLGNLSSLVSLDLSNNELTGEIPLEFANLRQLSLLNLFINKFHGEIPHFLANLPKLEVLKVWQNNFTGAIPAKLGENGRLTELDLSTNKLTGLVPERLCLGGRLRILILLNNFLFGAVPRDLGRCETLVRVRMGQNYLTGSIPEGLLYLPQLSLMELQNNYLSGPLPQDMRPLPSKLGLLNLSNNRFSGSLPTSIGNFTYLQNLLLRGNHFSGDIPFEIGKLRNLLKLDMSRNNFSGRIPPELGTCVSLTYLDLSLNQLTSPIPVQISQIRILNYLNLSWNHLNQSLPKEIGSIKSLTCADFSHNNLSGPIPETGQFLLFNSTSFVGNPQLCGSSLNPCNQSASKSQTPTGANSKAVGKYKLVFALGLLICSVIFAALAIVQTRKAKKKSSSWKLAAFQKLEFGSKDIIECIKENNIIGKGGAGIVYKGIMPSGEQVAIKKLLAINKGSSHDNGLSAEIQTLGKIRHRNIVRLLAFCSNKQTNLLVYEYMPNGSLGEVLHGKRGCCLKWGTRLKIAIEAAKGLCYLHHDCSPLIIHRDVKSNNILLNSDFEAHVADFGLAKFLQDNGTSECMSVIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELITGRKPVGNFGEDGLDIVQWTKIQTNSTKEGVVKILDQRLSNIPINEAKQVFFVAMLCVQEHSVERPTMREVLQMLAQAHQPNTFHMH 964
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 147802 152868 + Maker00000025 Lcy1g0015 621927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0015 964 SMART LRR_typ_2 176 200 IPR003591 -
Lcy1g0015 964 SMART LRR_typ_2 152 175 IPR003591 -
Lcy1g0015 964 SMART LRR_typ_2 249 272 IPR003591 -
Lcy1g0015 964 SMART LRR_typ_2 538 562 IPR003591 -
Lcy1g0015 964 SMART LRR_typ_2 490 514 IPR003591 -
Lcy1g0015 964 SMART LRR_typ_2 346 369 IPR003591 -
Lcy1g0015 964 SMART LRR_typ_2 104 127 IPR003591 -
Lcy1g0015 964 SMART LRR_typ_2 273 296 IPR003591 -
Lcy1g0015 964 SMART LRR_typ_2 321 345 IPR003591 -
Lcy1g0015 964 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 20 956 IPR050647 -
Lcy1g0015 964 Gene3D Ribonuclease Inhibitor 194 293 IPR032675 -
Lcy1g0015 964 Gene3D Transferase(Phosphotransferase) domain 1 758 963 - -
Lcy1g0015 964 SUPERFAMILY L domain-like 294 608 - -
Lcy1g0015 964 ProSitePatterns Serine/Threonine protein kinases active-site signature. 802 814 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0015 964 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 758 964 - -
Lcy1g0015 964 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 325 611 - -
Lcy1g0015 964 SMART serkin_6 680 959 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0015 964 FunFam Leucine-rich repeat receptor-like protein kinase 37 195 - -
Lcy1g0015 964 SUPERFAMILY L domain-like 66 380 - -
Lcy1g0015 964 Gene3D Phosphorylase Kinase; domain 1 644 757 - -
Lcy1g0015 964 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 649 757 - -
Lcy1g0015 964 SUPERFAMILY Protein kinase-like (PK-like) 676 952 IPR011009 -
Lcy1g0015 964 Pfam Leucine rich repeat N-terminal domain 38 77 IPR013210 -
Lcy1g0015 964 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 213 318 - -
Lcy1g0015 964 Pfam Protein kinase domain 682 950 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0015 964 ProSiteProfiles Protein kinase domain profile. 680 964 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0015 964 Gene3D Ribonuclease Inhibitor 317 616 IPR032675 -
Lcy1g0015 964 Pfam Leucine Rich Repeat 492 514 IPR001611 GO:0005515(InterPro)
Lcy1g0015 964 Pfam Leucine Rich Repeat 447 466 IPR001611 GO:0005515(InterPro)
Lcy1g0015 964 Pfam Leucine Rich Repeat 106 128 IPR001611 GO:0005515(InterPro)
Lcy1g0015 964 Pfam Leucine Rich Repeat 516 536 IPR001611 GO:0005515(InterPro)
Lcy1g0015 964 Pfam Leucine Rich Repeat 347 367 IPR001611 GO:0005515(InterPro)
Lcy1g0015 964 Pfam Leucine Rich Repeat 227 249 IPR001611 GO:0005515(InterPro)
Lcy1g0015 964 Pfam Leucine Rich Repeat 275 297 IPR001611 GO:0005515(InterPro)
Lcy1g0015 964 Pfam Leucine Rich Repeat 252 273 IPR001611 GO:0005515(InterPro)
Lcy1g0015 964 Pfam Leucine Rich Repeat 154 172 IPR001611 GO:0005515(InterPro)
Lcy1g0015 964 Pfam Leucine Rich Repeat 178 200 IPR001611 GO:0005515(InterPro)
Lcy1g0015 964 Pfam Leucine Rich Repeat 469 490 IPR001611 GO:0005515(InterPro)
Lcy1g0015 964 Gene3D Ribonuclease Inhibitor 37 193 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0438 Lcy-Chr13:5069737 Lcy1g0015 Lcy-Chr1:147802 9.78E-88 dispersed
Lcy1g0015 Lcy-Chr1:147802 Lcy8g0015 Lcy-Chr8:686630 3.07E-181 dispersed
Lcy1g0015 Lcy-Chr1:147802 Lcy1g0021 Lcy-Chr1:190798 4.08E-238 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65599 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0015 - - - 0.0