Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0019 ATGAGGAATACACCTGATTTCTTCAACAGACTTATTGATAGCATTGCACCAGCAGTCTTTGGCCATCAAGATATCAAGCGAGCAATCCTGCTGATGCTGTTAGGTGGTGTCCACAAGTTAACTCATGAAGGCATTAACCTTCGAGGTGACATCAATGTCTGTATAGTAGGAGATCCAAGCTGTGCAAAATCTCAGTTTCTAAAGTATACTTCAGGTATTGTGCCAAGATCAGTTTACACATCTGGAAAGTCCTCTTCTGCCGCTGGATTGACTGCAACTGTAGCCAAAGAACCAGAAACTGGGGAGTTTTGTATTGAGGCTGGTGCCTTGATGCTTGCTGACAATGGCATTTGCTGTATTGATGAATTTGACAAAATGGACATCAGGGATCAGGTTGCAATTCATGAAGCTATGGAGCAGCAGACCATAAGCATAACAAAAGCCGGAATACAGGCAACACTAAATGCTAGGACATCAATCCTCGCTGCTGCTAATCCTACAGGAGGGCGCTATGACAAGTCTAAACCACTCAAGTATAATGTTGCTCTGCCTCCTGCTATTCTCTCAAGGTTTGACCTCGTGTACGTGATGATAGATGATCCAGATGATCAAACGGATTACCACATTGCACACCACATTGTGAGAGTACATCAGAAGCATGAAGATGCTCTTTCTCCTGCTTTTACTACTGCTGAGTTGAAGCGTTATATTGCATATGCAAAAACTCTAAAACCGAAGTTAAGCTTAGAAGCCAGAAAGGTATTGGTGGACTCTTATGTTGCTCTTCGCAGAGGAGATACAACTCCCGGAAGTAGGGTTGCCTATCGCATGACAGTCAGGCAGCTTGAGGCATTAATAAGGCTGTCCGAAGCAATCGCTCGTAGTTATTTGGAGACTCTGGTTCAATCGCGCCATGTGCGTTTAGCAGTGACGTTACTGAAAACTGTGGAATCTAGCGAAATTGACCTATCTGAATTTCAAGAAGAAATGGATGGAGGTGGAGATGGTAATAATAATGTCGATAATGGGCCTAATGAGGTTGATGCTGAACCTAGGAATGGTGCAACAGAGCCAACTTCTGAAAATGGTGGTTCTGAAAGTCAAAATAGGAAGAAGAAACTTTTCCTGAGTTATGAATATTTTCAGAGGGTTATCCAAGCCCTTGTCATGCGCCTCAGACAGCACGAAGAATCTGTGATGCAAGAAGGAACTGGACTGGCGGGAATGAGGCAGAGAGACTTAATTGAATGGTATGTGGCTCAGCAGAACGAGAGAAATAGCTATAGCTCCATGAAGGAGGTACAAAAGGAAGTTAAAACAATTAAAGCTATCATTGAGAGTTTGATAGTAAGGGAAGGCCATTTGATAGTGGTAGATGAAGGGAGGCCGGTTGATGGCGTCGAAGGCGAACCATCGTTAGTAAAGGATAACAGGATTTTAGCTGTGGCTCCTAATTATGTCGTTGATTGA 1470 43.4 MRNTPDFFNRLIDSIAPAVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKHEDALSPAFTTAELKRYIAYAKTLKPKLSLEARKVLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSYLETLVQSRHVRLAVTLLKTVESSEIDLSEFQEEMDGGGDGNNNVDNGPNEVDAEPRNGATEPTSENGGSESQNRKKKLFLSYEYFQRVIQALVMRLRQHEESVMQEGTGLAGMRQRDLIEWYVAQQNERNSYSSMKEVQKEVKTIKAIIESLIVREGHLIVVDEGRPVDGVEGEPSLVKDNRILAVAPNYVVD 489
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 184157 188689 - Maker00000014 Lcy1g0019 621931
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0019 489 Gene3D - 1 318 IPR027417 -
Lcy1g0019 489 Pfam MCM6 C-terminal winged-helix domain 372 487 IPR041024 -
Lcy1g0019 489 Gene3D - 369 489 - -
Lcy1g0019 489 FunFam DNA helicase 369 489 - -
Lcy1g0019 489 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 313 IPR027417 -
Lcy1g0019 489 ProSiteProfiles MCM family domain profile. 7 213 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy1g0019 489 MobiDBLite consensus disorder prediction 328 369 - -
Lcy1g0019 489 Pfam MCM AAA-lid domain 232 315 IPR041562 -
Lcy1g0019 489 PRINTS Mini-chromosome maintenance (MCM) protein family signature 160 172 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy1g0019 489 PRINTS Mini-chromosome maintenance (MCM) protein family signature 187 195 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy1g0019 489 PRINTS Mini-chromosome maintenance (MCM) protein family signature 108 122 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy1g0019 489 PRINTS Mini-chromosome maintenance (MCM) protein family signature 136 149 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy1g0019 489 PRINTS Mini-chromosome maintenance (MCM) protein family signature 48 63 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy1g0019 489 ProSitePatterns MCM family signature. 116 124 IPR018525 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro)
Lcy1g0019 489 FunFam DNA helicase 1 320 - -
Lcy1g0019 489 SMART mcm 1 318 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy1g0019 489 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 2 431 IPR031327 GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006268(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:1902969(PANTHER)|GO:1990518(PANTHER)
Lcy1g0019 489 Pfam MCM P-loop domain 2 217 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy1g0019 489 CDD MCM6 10 315 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0019 Lcy-Chr1:184157 Lcy3g1810 Lcy-Chr3:45311503 1.34E-82 dispersed
Lcy1g0019 Lcy-Chr1:184157 Lcy11g0915 Lcy-Chr11:27405421 7.47E-69 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0019 K02542 - csv:101219775 845.884