Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy1g0019 | ATGAGGAATACACCTGATTTCTTCAACAGACTTATTGATAGCATTGCACCAGCAGTCTTTGGCCATCAAGATATCAAGCGAGCAATCCTGCTGATGCTGTTAGGTGGTGTCCACAAGTTAACTCATGAAGGCATTAACCTTCGAGGTGACATCAATGTCTGTATAGTAGGAGATCCAAGCTGTGCAAAATCTCAGTTTCTAAAGTATACTTCAGGTATTGTGCCAAGATCAGTTTACACATCTGGAAAGTCCTCTTCTGCCGCTGGATTGACTGCAACTGTAGCCAAAGAACCAGAAACTGGGGAGTTTTGTATTGAGGCTGGTGCCTTGATGCTTGCTGACAATGGCATTTGCTGTATTGATGAATTTGACAAAATGGACATCAGGGATCAGGTTGCAATTCATGAAGCTATGGAGCAGCAGACCATAAGCATAACAAAAGCCGGAATACAGGCAACACTAAATGCTAGGACATCAATCCTCGCTGCTGCTAATCCTACAGGAGGGCGCTATGACAAGTCTAAACCACTCAAGTATAATGTTGCTCTGCCTCCTGCTATTCTCTCAAGGTTTGACCTCGTGTACGTGATGATAGATGATCCAGATGATCAAACGGATTACCACATTGCACACCACATTGTGAGAGTACATCAGAAGCATGAAGATGCTCTTTCTCCTGCTTTTACTACTGCTGAGTTGAAGCGTTATATTGCATATGCAAAAACTCTAAAACCGAAGTTAAGCTTAGAAGCCAGAAAGGTATTGGTGGACTCTTATGTTGCTCTTCGCAGAGGAGATACAACTCCCGGAAGTAGGGTTGCCTATCGCATGACAGTCAGGCAGCTTGAGGCATTAATAAGGCTGTCCGAAGCAATCGCTCGTAGTTATTTGGAGACTCTGGTTCAATCGCGCCATGTGCGTTTAGCAGTGACGTTACTGAAAACTGTGGAATCTAGCGAAATTGACCTATCTGAATTTCAAGAAGAAATGGATGGAGGTGGAGATGGTAATAATAATGTCGATAATGGGCCTAATGAGGTTGATGCTGAACCTAGGAATGGTGCAACAGAGCCAACTTCTGAAAATGGTGGTTCTGAAAGTCAAAATAGGAAGAAGAAACTTTTCCTGAGTTATGAATATTTTCAGAGGGTTATCCAAGCCCTTGTCATGCGCCTCAGACAGCACGAAGAATCTGTGATGCAAGAAGGAACTGGACTGGCGGGAATGAGGCAGAGAGACTTAATTGAATGGTATGTGGCTCAGCAGAACGAGAGAAATAGCTATAGCTCCATGAAGGAGGTACAAAAGGAAGTTAAAACAATTAAAGCTATCATTGAGAGTTTGATAGTAAGGGAAGGCCATTTGATAGTGGTAGATGAAGGGAGGCCGGTTGATGGCGTCGAAGGCGAACCATCGTTAGTAAAGGATAACAGGATTTTAGCTGTGGCTCCTAATTATGTCGTTGATTGA | 1470 | 43.4 | MRNTPDFFNRLIDSIAPAVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKHEDALSPAFTTAELKRYIAYAKTLKPKLSLEARKVLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSYLETLVQSRHVRLAVTLLKTVESSEIDLSEFQEEMDGGGDGNNNVDNGPNEVDAEPRNGATEPTSENGGSESQNRKKKLFLSYEYFQRVIQALVMRLRQHEESVMQEGTGLAGMRQRDLIEWYVAQQNERNSYSSMKEVQKEVKTIKAIIESLIVREGHLIVVDEGRPVDGVEGEPSLVKDNRILAVAPNYVVD | 489 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 184157 | 188689 | - | Maker00000014 | Lcy1g0019 | 621931 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy1g0019 | 489 | Gene3D | - | 1 | 318 | IPR027417 | - | |
| Lcy1g0019 | 489 | Pfam | MCM6 C-terminal winged-helix domain | 372 | 487 | IPR041024 | - | |
| Lcy1g0019 | 489 | Gene3D | - | 369 | 489 | - | - | |
| Lcy1g0019 | 489 | FunFam | DNA helicase | 369 | 489 | - | - | |
| Lcy1g0019 | 489 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 17 | 313 | IPR027417 | - | |
| Lcy1g0019 | 489 | ProSiteProfiles | MCM family domain profile. | 7 | 213 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lcy1g0019 | 489 | MobiDBLite | consensus disorder prediction | 328 | 369 | - | - | |
| Lcy1g0019 | 489 | Pfam | MCM AAA-lid domain | 232 | 315 | IPR041562 | - | |
| Lcy1g0019 | 489 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 160 | 172 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lcy1g0019 | 489 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 187 | 195 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lcy1g0019 | 489 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 108 | 122 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lcy1g0019 | 489 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 136 | 149 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lcy1g0019 | 489 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 48 | 63 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lcy1g0019 | 489 | ProSitePatterns | MCM family signature. | 116 | 124 | IPR018525 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro) | |
| Lcy1g0019 | 489 | FunFam | DNA helicase | 1 | 320 | - | - | |
| Lcy1g0019 | 489 | SMART | mcm | 1 | 318 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lcy1g0019 | 489 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 2 | 431 | IPR031327 | GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006268(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:1902969(PANTHER)|GO:1990518(PANTHER) | |
| Lcy1g0019 | 489 | Pfam | MCM P-loop domain | 2 | 217 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lcy1g0019 | 489 | CDD | MCM6 | 10 | 315 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy1g0019 | Lcy-Chr1:184157 | Lcy3g1810 | Lcy-Chr3:45311503 | 1.34E-82 | dispersed | |
| Lcy1g0019 | Lcy-Chr1:184157 | Lcy11g0915 | Lcy-Chr11:27405421 | 7.47E-69 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy1g0019 | K02542 | - | csv:101219775 | 845.884 |