Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0020 ATGGAGAGCCATGGAACTAGTAGTTATTTCGTGGATGAGAAGGCTGTTCTCGTCGAGAACATTTTCTTCGACTTCCTCAAAAGTTTTCGCCTCAATGGGAACTCTGGAGACCCTTACTACGAGGCAGAGATAGAAGCTATGATGGCTGGCGAATCTAACACCATGTTCATTGATTTCGCTCACCTTATGCGCTCCAATGACCTTCTTCACGTAGCAATCGCCGACGAATATCTGAGGTTTGAACCATACCTCAAGAACGCTTGCAAGCGATTCGTAATGGAGCAGAATCCTTCTTTCATCGCTGACGATAACCCCTTCAAGGACATAAATGTCGCTTTCTTCAACATTCCTGTTTCTAAAAGGTTGAGAGAATTGACCACTGCAGAAATTGGGAAATTAGTATCTGTGACAGGAGTGGTGACGCGGACAAGCGAGGTCCGACCAGAGCTTCTACAGGGGACCTTCAAGTGCTTAGAATGTGGAAATGTCATAAAGAATGTCGAACAACAATTCAAGTACACGGAGCCAACGATATGCGTGAACCCAACCTGTTCGAATAGAACAAAGTGGGCATTACTTCGGCAAGAGAGTAAATTCGCTGATTGGCAGAGGGTGCGAATGCAAGAAACTTCAAAGGAGATACCGGCTGGCTCTCTTCCACGATCTTTGGATGTTATTCTTCGCCATGAAATGGTCGAACGTGCTAGGGCTGGAGACACGGTCATCTTCACGGGTACAGTAGTTGTCATACCAGATATATTAGCATTAGCCTCTCCAGGTGAAAGAGCAGAATGTCGTCGAGAAGCTTCAGAGCGAAAAAACTCTGCAGTTGGACATGAAGGAATGAGAGGGCTACGAGCACTAGGAGTAAGGGACCTGTCCTATCGCCTAGCCTTTATTGCCAATTCAGTTCAGGCTAGTCCTTGA 927 46.28 MESHGTSSYFVDEKAVLVENIFFDFLKSFRLNGNSGDPYYEAEIEAMMAGESNTMFIDFAHLMRSNDLLHVAIADEYLRFEPYLKNACKRFVMEQNPSFIADDNPFKDINVAFFNIPVSKRLRELTTAEIGKLVSVTGVVTRTSEVRPELLQGTFKCLECGNVIKNVEQQFKYTEPTICVNPTCSNRTKWALLRQESKFADWQRVRMQETSKEIPAGSLPRSLDVILRHEMVERARAGDTVIFTGTVVVIPDILALASPGERAECRREASERKNSAVGHEGMRGLRALGVRDLSYRLAFIANSVQASP 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 188962 190681 - Maker00000003 Lcy1g0020 621932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0020 308 Gene3D - 122 250 IPR012340 -
Lcy1g0020 308 Gene3D - 10 118 - -
Lcy1g0020 308 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 17 300 IPR031327 GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006268(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:1902969(PANTHER)|GO:1990518(PANTHER)
Lcy1g0020 308 SMART mcm 118 305 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy1g0020 308 SUPERFAMILY Nucleic acid-binding proteins 22 252 IPR012340 -
Lcy1g0020 308 Gene3D - 149 200 - -
Lcy1g0020 308 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 222 233 IPR008049 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Lcy1g0020 308 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 169 186 IPR008049 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Lcy1g0020 308 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 281 302 IPR008049 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Lcy1g0020 308 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 77 89 IPR008049 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Lcy1g0020 308 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 119 131 IPR008049 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Lcy1g0020 308 FunFam DNA helicase 149 200 - -
Lcy1g0020 308 Pfam MCM OB domain 122 250 IPR033762 -
Lcy1g0020 308 Pfam MCM N-terminal domain 21 115 IPR027925 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0020 K02542 - csv:101219775 580.482