Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0021 ATGTCGCAGTTTCCCGCCAAAAGCAATGGGATGGATGACCAAGGCAAGGGCAAGGGTGATGCACAAGGAGCTGACAAGGACAATCGGGCAGAGGTAGGACCAGAAAACCGACCCAGAGAAATACCGGATCAAAGGGTCGGGCCAACATGGCCCGACCATCCGGCCTGCGCTTGGACACCCCCTTTCGGTCCCAGATGCCCCGAATCGCCCAGGTCAGATGAGTCCTCTGTCCGGATTTTGGCATCGACAACGAATATATCCGAAGGTGTCTGGAACGTGAAGAACTTCTACGACGATTTTAAGTTTGAAACTGTGTCTGTTTGGAGTGATTCCAACCTCGATCATCTCAAGGAATCTGTTGGGAAATACAAGCTTGTGTTTGCGTTGGGACTATTGATATGTTCGGTGATATTTGCAGCTCTGGCAATCGTTCAGACAAGGAAGGCGAAGAAGAAATCAAGTTCGTGGAAGCTAGCAGCATTCCAGAAGCTGGAATTTGGAAGCAAGGACATCATAGAGTGCATAAAAGAGAACAACATAATTGGAAAAGGTGGAGCTGGAATTGTGTACAAAGGAATCATGCCAAGTGGAGAACAAGTAGCCATAAAAAAGCTGTTGGCCATAAACAAGGGATCCTCCCACGACAACGGTCTGTCGGCGGAGATACAGACGCTGGGCAAAATCCGGCATAGGAACATCGTGAGATTGCTTGCATTTTGCTCGAATAAGCAGACGAACCTACTGGTGTACGAGTACATGCCCAATGGAAGTTTAGGAGAAGTTCTCCATGGGAAGAGGGGTTGTTGTCTAAAATGGGGAACCAGGCTGAAGATAGCTATAGAAGCAGCCAAAGGGCTTTGCTATTTGCACCATGACTGTTCGCCGCTCATAATCCATAGGGATGTCAAGTCCAACAACATTTTGCTCAACTCAGATTTCGAGGCTCATGTAGCGGATTTCGGGTTGGCCAAGTTCTTGCAAGACAACGGAACATCGGAGTGCATGTCTGTCATTGCCGGTTCTTATGGGTATATTGCTCCAGAATATGCCTACACATTAAAGGTGGATGAAAAAAGTGATGTTTACAGTTTTGGAGTGGTGTTGCTGGAGCTTATAACAGGACGAAAGCCTGTGGGCAATTTTGGGGAAGATGGTCTAGACATTGTTCAATGGACTAAGATTCAAACCAACTCTACGAAAGAAGGAGTTGTTAAGATACTGGATCAAAGGTTAAGTAACATACCAATAAATGAAGCAAAGCAAGTATTTTTTGTTGCTATGTTATGCGTTCAAGAACACAGCGTGGAGCGGCCAACAATGAGAGAAGTGCTTCAAATGCTTGCACAAGCCCACCAACCAAATACCTTCCACATGCATTGA 1380 46.38 MSQFPAKSNGMDDQGKGKGDAQGADKDNRAEVGPENRPREIPDQRVGPTWPDHPACAWTPPFGPRCPESPRSDESSVRILASTTNISEGVWNVKNFYDDFKFETVSVWSDSNLDHLKESVGKYKLVFALGLLICSVIFAALAIVQTRKAKKKSSSWKLAAFQKLEFGSKDIIECIKENNIIGKGGAGIVYKGIMPSGEQVAIKKLLAINKGSSHDNGLSAEIQTLGKIRHRNIVRLLAFCSNKQTNLLVYEYMPNGSLGEVLHGKRGCCLKWGTRLKIAIEAAKGLCYLHHDCSPLIIHRDVKSNNILLNSDFEAHVADFGLAKFLQDNGTSECMSVIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELITGRKPVGNFGEDGLDIVQWTKIQTNSTKEGVVKILDQRLSNIPINEAKQVFFVAMLCVQEHSVERPTMREVLQMLAQAHQPNTFHMH 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 190798 196495 + Maker00000006 Lcy1g0021 621933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0021 459 Pfam Protein kinase domain 177 446 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0021 459 SUPERFAMILY Protein kinase-like (PK-like) 170 447 IPR011009 -
Lcy1g0021 459 Gene3D Transferase(Phosphotransferase) domain 1 253 458 - -
Lcy1g0021 459 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 124 451 IPR050647 -
Lcy1g0021 459 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 253 459 - -
Lcy1g0021 459 MobiDBLite consensus disorder prediction 18 42 - -
Lcy1g0021 459 SMART serkin_6 175 454 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0021 459 MobiDBLite consensus disorder prediction 1 73 - -
Lcy1g0021 459 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 144 252 - -
Lcy1g0021 459 Gene3D Phosphorylase Kinase; domain 1 139 252 - -
Lcy1g0021 459 ProSiteProfiles Protein kinase domain profile. 175 459 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0021 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 297 309 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0021 Lcy-Chr1:190798 Lcy6g1085 Lcy-Chr6:12136941 1.51E-165 dispersed
Lcy1g0015 Lcy-Chr1:147802 Lcy1g0021 Lcy-Chr1:190798 4.08E-238 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65600 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0021 - - - 0.0