Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0071 ATGGCGCCGGGCCTCAGAGACCTGCAGCTCGCCCAGGTCTCCGCTGCCGACCGTCGCCCGCCGGCTGTTTCTTCTGCTGCTGAACTTTCCGATGATCTTGAGGATGTGCGCTTGCTTGATTCCTACGAGAGGCCGGAGGAGAATTTGGGCAAAATTGGGGAAGGTATGAGGAGGGTTCAGGTCAGAGTTTCTGGGATGACCTGCGCTGCTTGTTCTAATTCCGTCGAAGCTGCTCTCAGCGGCGTTAATGGCGTTTTCATGGCCTCTGTTGCATTGCTTCAGAACAGAGCTGACGTGGTTTTTGACCCCAACTTGGTTAAGGATGATGACATCAAGGAAGCGATAGAAGACGCTGGATTTGAGGCTGAGATTATACCTGAAACCAGTTCAGTTGGAAAGAAGTCGCATGGAACACTGGTGGGTCAATTTACCATAGGAGGTATGACATGTGCAGCATGTGTGAATTCGGTAGAAGGCATTTTAAAAGATCTCCCTGGTGTTAGAAGAGCGGTAGTTGCTTTGGCCACATCATTGGGAGAAGTTGAATATGATCCAACTATAACCAGTAAAGACGATATAGTTAATGCAATTGAGGATGCTGGATTTGAAGCTTCATTTGTACAGAGCAGCGAGCAAGATAAAATTTTACTAGCGGTCGCAGGCATTGCCGGCGAGGTTGATGTACAGTTTTTGGAAGTCATACTTAGCAACTTGAAAGGGGTGAGACGGTTTCTCTTTAACAGGACATCAGGAAAACTTGAAGTTGTTTTTGACCCAGAAGTTGTTGGTCCCAGATCCTTAGTGGATGAGATTGAGGGAAGAAGCAACAGAAAATTTAAGCTGCATGTTACGAGCCCTTACACGAGGTTAACATCTAAAGATGTTGAAGAAGCTAATAACATGTTTCGGCTTTTTATCTCCAGTCTGTTTCTCAGTGTGCTGATCTTTCTCCAACGAGTAGTATGTCCTCATATTCCTCTAATCTACTCATTGTTACTCTGGCGGTGTGGGCCCTTCCTCATGGATGATTGGTTAAAGTGGGCATTGGTGACTGTTGTGCAATTTATCATTGGAAAACGCTTTTACATTGCAGCTGCTAGAGCTCTTCGAAATGGTTCAACTAACATGGATGTCTTGGTTGCTTTGGGTACCACGGCCTCTTACGTGTATTCTGTTTGTGCACTTCTCTATGGTGCATTCACCGGATTTTGGTCTCCTACTTATTTTGAAACAAGTGCTATGTTGATAACCTTTGTATTATTGGGAAAGTATTTGGAGTGTCTTGCCAAGGGGAAAACATCAGATGCCATCAAGAAGTTGGTAGAACTTGCTCCTGCAACTGCTCTATTGCTTATCCGGGATAAAGGTGGGAATCTGATAGAAGAAAGGGAAATAGATGCTCTGTTAATTCAACCTGGTGATGTGTTGAAAGTTCTTCCTGGTACAAAGATTCCAGCGGATGGTGTTGTTGTTTGGGGTTCAAGTTATGTTAATGAGAGTATGGTTACTGGAGAATCTATACCTGTTTTGAAGGAGGTTAACTCGCATGTTATTGGGGGTACAATTAACTTTCATGGAGCCCTTCACATTCAGGCAACGAAAGTAGGATCTGATGCAGTTTTGAACCAGATTATTAGTTTGGTTGAGACAGCACAGATGTCTAAAGCCCCAATTCAGAAATTTGCTGATTTTGTAAGTGTGATGATGGGTACTTTACTTTTATTAGACAATTGTCTAACTTTAATCTGA 1749 43.85 MAPGLRDLQLAQVSAADRRPPAVSSAAELSDDLEDVRLLDSYERPEENLGKIGEGMRRVQVRVSGMTCAACSNSVEAALSGVNGVFMASVALLQNRADVVFDPNLVKDDDIKEAIEDAGFEAEIIPETSSVGKKSHGTLVGQFTIGGMTCAACVNSVEGILKDLPGVRRAVVALATSLGEVEYDPTITSKDDIVNAIEDAGFEASFVQSSEQDKILLAVAGIAGEVDVQFLEVILSNLKGVRRFLFNRTSGKLEVVFDPEVVGPRSLVDEIEGRSNRKFKLHVTSPYTRLTSKDVEEANNMFRLFISSLFLSVLIFLQRVVCPHIPLIYSLLLWRCGPFLMDDWLKWALVTVVQFIIGKRFYIAAARALRNGSTNMDVLVALGTTASYVYSVCALLYGAFTGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATALLLIRDKGGNLIEEREIDALLIQPGDVLKVLPGTKIPADGVVVWGSSYVNESMVTGESIPVLKEVNSHVIGGTINFHGALHIQATKVGSDAVLNQIISLVETAQMSKAPIQKFADFVSVMMGTLLLLDNCLTLI 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 626034 632587 + Maker00011924 Lcy1g0071 621983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0071 582 CDD HMA 142 205 IPR006121 GO:0046872(InterPro)
Lcy1g0071 582 Gene3D - 141 206 - -
Lcy1g0071 582 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 46 578 - -
Lcy1g0071 582 ProSitePatterns Heavy-metal-associated domain. 145 174 IPR017969 GO:0046872(InterPro)
Lcy1g0071 582 NCBIfam copper ion binding protein 142 204 IPR006122 GO:0005507(InterPro)
Lcy1g0071 582 NCBIfam copper ion binding protein 59 122 IPR006122 GO:0005507(InterPro)
Lcy1g0071 582 FunFam Copper-exporting P-type ATPase A 55 125 - -
Lcy1g0071 582 ProSiteProfiles Heavy-metal-associated domain profile. 57 123 IPR006121 GO:0046872(InterPro)
Lcy1g0071 582 PRINTS Copper-transporting ATPase 1 signature 58 83 - -
Lcy1g0071 582 PRINTS Copper-transporting ATPase 1 signature 113 133 - -
Lcy1g0071 582 PRINTS Copper-transporting ATPase 1 signature 84 107 - -
Lcy1g0071 582 FunFam Copper-exporting P-type ATPase A 138 207 - -
Lcy1g0071 582 ProSitePatterns Heavy-metal-associated domain. 63 93 IPR017969 GO:0046872(InterPro)
Lcy1g0071 582 SUPERFAMILY HMA, heavy metal-associated domain 210 273 IPR036163 GO:0046872(InterPro)
Lcy1g0071 582 Gene3D - 56 128 - -
Lcy1g0071 582 ProSiteProfiles Heavy-metal-associated domain profile. 139 205 IPR006121 GO:0046872(InterPro)
Lcy1g0071 582 CDD HMA 60 123 IPR006121 GO:0046872(InterPro)
Lcy1g0071 582 FunFam Copper-transporting ATPase 1, putative 430 552 - -
Lcy1g0071 582 NCBIfam HAD-IC family P-type ATPase 415 563 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy1g0071 582 Pfam Heavy-metal-associated domain 143 203 IPR006121 GO:0046872(InterPro)
Lcy1g0071 582 Pfam Heavy-metal-associated domain 61 121 IPR006121 GO:0046872(InterPro)
Lcy1g0071 582 SUPERFAMILY HMA, heavy metal-associated domain 140 210 IPR036163 GO:0046872(InterPro)
Lcy1g0071 582 Gene3D - 430 552 - -
Lcy1g0071 582 SUPERFAMILY HMA, heavy metal-associated domain 53 126 IPR036163 GO:0046872(InterPro)
Lcy1g0071 582 SUPERFAMILY Calcium ATPase, transduction domain A 462 548 IPR008250 -
Lcy1g0071 582 Pfam E1-E2 ATPase 443 575 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0071 Lcy-Chr1:626034 Lcy1g1707 Lcy-Chr1:17870056 3.13E-124 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0071 K17686 - csv:101205642 1018.84