Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0078 ATGGGGAAGAAGAAGAAGAGGGTTTCCTCTAAGGTATGGTGCTACTATTGCGACAGAGAATTTGACGACGAGAAGATATTGGTGCAGCATCAGAAGGCCAAACACTTCAAGTGCCATGTCTGTCACAAGAAGCTTTCTACTGCTGGTGGTATGGTCATCCACGTTCTTCAGGTTCATAAAGAGTCGGTCACCAAAGTTCCTAATGCAAAACCAGGCAGAGAATCAACAGACATTGAAATATATGGAATGCAAGGAATCCCACCTGATGTCTTGGCAGCACACTATGGAGAGGAGGAGGAAGAGTCCATATCGAAGGTGGCCAAAGTGGAGATGCCATCAACTCAGATGGTTGGTGGTGTGGTGCCCGGATCGCTGGGTATTGTATACCCTCCTCAATCAGGTTTAGCTGCAATGCAACCTATCTATGCTTCGACTGGACTTGCGCAGCCTAATGCCTGGCCTGTTCCACCTCGTCCCCAACCTTGGTTTCCTCCAAATTCAGCCGTTTCAATTCCTCCTCCAGCCCCATTGGGCTATGCTCAGCAGCCACTATTTCCTGTGCAGACAGCAAGGCCCCCAGTCCCAGTATCATCAACTCCTATGCTCCAGCCTTCACAAATAACGCCTCCTGGATTGCCTTCAACTACACCTTCAGTTTCTGTATCTCAACCGTTGTTCCCTGTTGTTAGTAATAGCCACGGACCTACCCAAAGCTCTCCTTTTCCTTCATCTACGCTTTCAACAAGCATTGCTTTGACCTCGCCAGCAGAAATCAAGGGCTCAGTGAGTGCACATCTGGGCACTAACTCCTTTTCTACAATTGGCAATCAAGTTCCAAGCATTCCAGGTGGAATATTAAGCAATTCACACTCTTATGCCTCGGGACCAAATACAGGCGGTCCTTCTATTGGACCACCTCCTGTAATTGCGAATAAAGCTCCTACTCAGCCATCAACAAATGAAGTATATTTAGTTTGGGATGATGAGGCGATGTCTATGGAGGAAAGAAGAATGTCCTTAACTAAGTATCAGGTGCATGATGAAACTAGCCAGATGAGTTCAATCGATGCAGCCATAGACAAAAGAATCTTGGAAAGCAGGCTTGCTGGCCGAATGCCATTTTAG 1125 47.11 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMVIHVLQVHKESVTKVPNAKPGRESTDIEIYGMQGIPPDVLAAHYGEEEEESISKVAKVEMPSTQMVGGVVPGSLGIVYPPQSGLAAMQPIYASTGLAQPNAWPVPPRPQPWFPPNSAVSIPPPAPLGYAQQPLFPVQTARPPVPVSSTPMLQPSQITPPGLPSTTPSVSVSQPLFPVVSNSHGPTQSSPFPSSTLSTSIALTSPAEIKGSVSAHLGTNSFSTIGNQVPSIPGGILSNSHSYASGPNTGGPSIGPPPVIANKAPTQPSTNEVYLVWDDEAMSMEERRMSLTKYQVHDETSQMSSIDAAIDKRILESRLAGRMPF 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 670226 676246 + Maker00011792 Lcy1g0078 621990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0078 374 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Lcy1g0078 374 Gene3D Classic Zinc Finger 1 66 - -
Lcy1g0078 374 PANTHER ZINC FINGER PROTEIN 207 1 374 - GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
Lcy1g0078 374 CDD SUF4-like 13 92 - -
Lcy1g0078 374 SMART c2h2final6 12 35 IPR013087 -
Lcy1g0078 374 SMART c2h2final6 36 59 IPR013087 -
Lcy1g0078 374 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677(InterPro)
Lcy1g0078 374 MobiDBLite consensus disorder prediction 287 315 - -
Lcy1g0078 374 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19479 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0078 K27810 - csv:101206973 672.159