Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0090 ATGGATTCAGCAAGGAGTTGGTTTCAGAAGTTCCAACATAAAGTAAAGAAGGAAACTGTAAATGAAAATGAGGTTCAAGATGCACCTTCAAATTCAACAAAACAGAAAGTTGAGGTTGCCAAGCAATATATTGAAAACCATTACAAATCTCAAATGAAGTCATTGCAAGATAGGAAGGAGAGACGTTGGGTGTTGGAGAGGAGGCTTGCTGATGCCGATGTTTCTGAGGAAGACCAAATAAACGTGCTTAAATATTTAGAACAGAAAGAGACAGAATACATGCGTCTTCGTAGACATAAAATGGGTGTCGATGACTTCGAACTTTTGACAATTATAGGAAGGGGTGCATTTGGGGAGGTTAGACTTTGTAGAGAAAAAACCACGGGTCATGTGTATGCAATGAAGAAGCTTAAAAAATCTGAGATGCTTCGCAGGGGCCAGGTGGAACATGTCAAAGCTGAAAGAAATCTTCTAGCAGAGGTTGACAGTGCCTACATTGTGAAGTTATACTGCTCCTTTCAGGATGAAGATTTTTTGTATCTTATAATGCAATATCTTCCTGGAGGTGATATGATGACCCTGTTAATGCGCAAGGATATTTTGACTGAGGATGAGGCTCGATTTTATGTTGGGGAAACAGTCCTTGCTATAGAGTCCATTCACAAGCATAATTACATTCACAGGATTGAAGACATCAAGCCTGATAATTTACTGCTTGATCGTTATGGCCACATTAAACTCTCAGATTTTGGGTTGTGTAAACCCTTGGAGTCTAGTAGTTTCCCTAATCTTACCGAGCAAGAAAATGTAATGGGGAAGAATGTCAGATCTTCCGCCGAAAATGATAGTCAGTTTAGCGTATCAAAACGGACACAACAAGAACAATTGTTACATTGGCAAAAGAACAGACGGACATTGGCTTATTCAGCTGTTGGAACGCCAGACTATATTGCCCCAGAAGTGTTATTGAGGAAAGGATATGGAATGGAGTGCGACTGGTGGTCCCTCGGTGCAATTATGTACGAAATGCTTGTGGGATTTCCACCTTTTTATTCTGATGACCCAATGTCTACATGTAGAAAGATTATTAACTGGAGGACTCATCTGAGATTCCCAACAGAAGCAAAACTTTCCATTGAGGCTAAAGATCTTATTTGCAAACTTCTATGCAATGTTGAGCAAAGAATTGGAACCAAAGGAGCTAAAGAAATTAAGGCGCATCCATGGTTTAAAGGTACACAATGGGATAAATTATATCAAATGGAAGCGGTCATCATCCCAGAGATCCATGATGAGTTAGATACTAGAAATTTTGAGAAGTATGAAGAGCTTGGCGTGCCAGGTCAAACTCCATCGAAGTCTGGCCCTTTGAGAAAGGCAAGTCTGCAGTGCAAAGCTTTTAAATCTTGCATGTACCTTATCACATAA 1428 39.99 MDSARSWFQKFQHKVKKETVNENEVQDAPSNSTKQKVEVAKQYIENHYKSQMKSLQDRKERRWVLERRLADADVSEEDQINVLKYLEQKETEYMRLRRHKMGVDDFELLTIIGRGAFGEVRLCREKTTGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSAYIVKLYCSFQDEDFLYLIMQYLPGGDMMTLLMRKDILTEDEARFYVGETVLAIESIHKHNYIHRIEDIKPDNLLLDRYGHIKLSDFGLCKPLESSSFPNLTEQENVMGKNVRSSAENDSQFSVSKRTQQEQLLHWQKNRRTLAYSAVGTPDYIAPEVLLRKGYGMECDWWSLGAIMYEMLVGFPPFYSDDPMSTCRKIINWRTHLRFPTEAKLSIEAKDLICKLLCNVEQRIGTKGAKEIKAHPWFKGTQWDKLYQMEAVIIPEIHDELDTRNFEKYEELGVPGQTPSKSGPLRKASLQCKAFKSCMYLIT 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 816900 826052 + Maker00011668 Lcy1g0090 622002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0090 475 ProSiteProfiles Protein kinase domain profile. 106 410 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0090 475 Pfam Protein kinase domain 107 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0090 475 Pfam Protein kinase domain 304 410 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0090 475 FunFam Non-specific serine/threonine protein kinase 77 189 - -
Lcy1g0090 475 CDD STKc_NDR_like 104 461 - -
Lcy1g0090 475 ProSiteProfiles AGC-kinase C-terminal domain profile. 411 475 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0090 475 CDD MobB_NDR_LATS-like 40 101 - -
Lcy1g0090 475 ProSitePatterns Protein kinases ATP-binding region signature. 112 135 IPR017441 GO:0005524(InterPro)
Lcy1g0090 475 SUPERFAMILY Protein kinase-like (PK-like) 87 457 IPR011009 -
Lcy1g0090 475 Gene3D Phosphorylase Kinase; domain 1 104 439 - -
Lcy1g0090 475 Gene3D Transferase(Phosphotransferase) domain 1 190 428 - -
Lcy1g0090 475 FunFam Non-specific serine/threonine protein kinase 309 428 - -
Lcy1g0090 475 FunFam Non-specific serine/threonine protein kinase 190 259 - -
Lcy1g0090 475 SMART serkin_6 106 410 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0090 475 PANTHER SERINE/THREONINE-PROTEIN KINASE 24 438 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0090 Lcy-Chr1:816900 Lcy3g1277 Lcy-Chr3:38645228 5.09E-246 dispersed
Lcy1g0090 Lcy-Chr1:816900 Lcy2g0938 Lcy-Chr2:8673721 4.07E-204 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65601 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0090 K08790 - csv:101208438 883.634