Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0114 ATGCTCCCCAAAGAAGCAAAGGAAGAAGATAACAGAAAGAATGACAACAACAATGACGACGATGGAGATGAATGTGAGGAGGATTTGGAAGATGAGGGAGGTTCGACGCAAATAAAACGACGAGGGGTTATCTATGGATCTCATTTAGTACAAGGAAAAATGGATCATGGAATGGAGGACTATATCGTTGCCGAAGAACGATATGTCGATGACCACAAGCTAGGACTATTTGCAATTTTCGATGGCCACTCCGGTCGCGATGTTGCAGAGTACTTGCAGAGCCATCTGTTTGATAACATATTGAGCCAGTCTGGTTTCTGGGAAGACCCTGAAGAAGCAATCAGGAGAGCATATAAAGAAATAGATGATGAGATTTTGGCTAGAAAAGTGAGAAAGAGAGGAGGTTCCACAGCAGTCACTGCTATACTAATTGATGGACAGAAGCTAATTGTCGCAAACGTTGGCGACTCACGAGCAGTGATACGCAGAAATGGCTTGGCAAAACCGATTACAGTCGATCACGAACCAGAGAAGGAGAAGGAACTTGTCGAGAGCCGAGGCGGATTTGTTGTACAAATGCCAGGAAGTGTGCCACGGGTGGATGGTCAGCTAGCAGTGTCGAGAGCATTTGGAGATGCAAAGCTCAAAGAACACATCACTTCAGAACCAGATATCAGGATCCTGACAATTGACAATGAGACTGAATTCACCATTTTGGCCAGTGATGGCCTCTGGAAGGTGATGTCAAACCAGGAAGCTTGTGATTGCATCAAAGAAATGGCTATGGATGCTCAAAAGGCGTCAGAGGAGTTGATCAAAGAGGCACTGTCTAGGGAGAGCTACGATGACATCTCCTGCATTGTTGTTACCTTCCACTGA 879 45.39 MLPKEAKEEDNRKNDNNNDDDGDECEEDLEDEGGSTQIKRRGVIYGSHLVQGKMDHGMEDYIVAEERYVDDHKLGLFAIFDGHSGRDVAEYLQSHLFDNILSQSGFWEDPEEAIRRAYKEIDDEILARKVRKRGGSTAVTAILIDGQKLIVANVGDSRAVIRRNGLAKPITVDHEPEKEKELVESRGGFVVQMPGSVPRVDGQLAVSRAFGDAKLKEHITSEPDIRILTIDNETEFTILASDGLWKVMSNQEACDCIKEMAMDAQKASEELIKEALSRESYDDISCIVVTFH 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 986786 988636 + Maker00011908 Lcy1g0114 622026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0114 292 SMART PP2C_4 34 289 IPR001932 -
Lcy1g0114 292 MobiDBLite consensus disorder prediction 1 37 - -
Lcy1g0114 292 CDD PP2Cc 43 291 IPR001932 -
Lcy1g0114 292 ProSiteProfiles PPM-type phosphatase domain profile. 44 291 IPR001932 -
Lcy1g0114 292 Gene3D - 23 292 IPR036457 -
Lcy1g0114 292 SMART PP2C_SIG_2 49 291 IPR001932 -
Lcy1g0114 292 FunFam Probable protein phosphatase 2C 39 35 292 - -
Lcy1g0114 292 Pfam Protein phosphatase 2C 54 284 IPR001932 -
Lcy1g0114 292 PANTHER PROTEIN PHOSPHATASE 21 289 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lcy1g0114 292 MobiDBLite consensus disorder prediction 1 19 - -
Lcy1g0114 292 SUPERFAMILY PP2C-like 42 292 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0387 Lcy-Chr13:4414263 Lcy1g0114 Lcy-Chr1:986786 4.60E-27 dispersed
Lcy1g0114 Lcy-Chr1:986786 Lcy9g1311 Lcy-Chr9:37855499 3.67E-100 dispersed
Lcy1g0114 Lcy-Chr1:986786 Lcy4g0673 Lcy-Chr4:8138087 8.88E-110 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0114 K14803 - csv:101211141 458.759