Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0121 ATGAATAATCGTGCAATGGAACTTGGGAGGCCTGGCTCAGGCAAAAGGAGACTAAGGGACCTATTGCTTCAAAAGGATAATCGCTTCTGTGCAGATTGTCGTGCTTTAGATCCTAAATGGGCGTCAGCAAATATTGGAGTTTTTATATGCTTGAAATGTTGTGGCGTTCACAGAAGCCTCGGTTCACATATATCAAAGGTGTTATCAGTGACGTTGGATGAATGGAGTGATGATGAAATTGATGCCATGATAGAAGTTGGAGGCAATTCTTCCGCAAATGCAATTTATGAAGCCTTTATTCCTGACGGATATGCAAAACCTGGACCAGATGCCACCCATGAACAACGTTCAAAATTTATTCGGTCCAAATATGAACTTCAAGAATTTCTGAAACCGAGCTTGAGAATTTTATCATCCAACAACGACAAAAGCAATATCCAAGCAAGCTTTTCTTCAAAGATTATGAACAGTTTTCGTTCAAATTCTTCACAAAAACCAGTGAGCTCTTGCTATACTTTATCCATTACCATACTAAAACCATGCTATCTTTGGAATTTAAAGCAATTGCAGAAAGGTATGGTAGAATTTGTTGGATTATTGAAGGTCAAAGTGATTAAAGGGACAAACTTAGCTATCAGGGACATGATGTCTAGCGATCCTTATGTAGTCTTGACTCTTGGACAACAGACTGTCCAGACATCTATAGTCAGGAGCAACTTGAATCCTGTGTGGAATGAGGAACTAATGCTATCTGTACCTCAATGTTTTGGATCCATGAAGTTGCAAGTATACGATTATGACACATTTTCAGCAGACGACATAATGGGAGAAGCAGAAATTGATCTCCAGCCCTTGATAACATCAGCAATGGCATTTGGAGATGCTGGAATGTTTTCAAACATGCAAATTGGAAAATGGCTGAAATCACACGATAATGCTCTCATAACCGATAGCACTGTTAATATCGTCGATGGCAAGGTGAAGCAAGCGATATCACTCAAGCTTCAGAATGTGGAATCAGGAGAACTAGATCTAGAGCTAGAATGGATGCCTCTTGAACAATAG 1065 39.62 MNNRAMELGRPGSGKRRLRDLLLQKDNRFCADCRALDPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDEWSDDEIDAMIEVGGNSSANAIYEAFIPDGYAKPGPDATHEQRSKFIRSKYELQEFLKPSLRILSSNNDKSNIQASFSSKIMNSFRSNSSQKPVSSCYTLSITILKPCYLWNLKQLQKGMVEFVGLLKVKVIKGTNLAIRDMMSSDPYVVLTLGQQTVQTSIVRSNLNPVWNEELMLSVPQCFGSMKLQVYDYDTFSADDIMGEAEIDLQPLITSAMAFGDAGMFSNMQIGKWLKSHDNALITDSTVNIVDGKVKQAISLKLQNVESGELDLELEWMPLEQ 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1033618 1039601 - Maker00012006 Lcy1g0121 622033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0121 354 CDD C2_ArfGAP 197 341 - -
Lcy1g0121 354 Gene3D Arf GTPase activating protein 3 135 IPR038508 -
Lcy1g0121 354 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 2 354 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Lcy1g0121 354 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 196 354 - -
Lcy1g0121 354 CDD ArfGap 18 124 - -
Lcy1g0121 354 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096(InterPro)
Lcy1g0121 354 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096(InterPro)
Lcy1g0121 354 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096(InterPro)
Lcy1g0121 354 Pfam Putative GTPase activating protein for Arf 16 131 IPR001164 GO:0005096(InterPro)
Lcy1g0121 354 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 198 342 IPR035892 -
Lcy1g0121 354 FunFam Arf-GAP with dual PH domain-containing protein 1 10 138 - -
Lcy1g0121 354 Gene3D C2 domain 196 354 IPR035892 -
Lcy1g0121 354 ProSiteProfiles C2 domain profile. 180 295 IPR000008 -
Lcy1g0121 354 SMART C2_3c 199 294 IPR000008 -
Lcy1g0121 354 SMART arf_gap_3 15 137 IPR001164 GO:0005096(InterPro)
Lcy1g0121 354 SUPERFAMILY ArfGap/RecO-like zinc finger 15 132 IPR037278 -
Lcy1g0121 354 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 143 IPR001164 GO:0005096(InterPro)
Lcy1g0121 354 Pfam C2 domain 198 286 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0121 Lcy-Chr1:1033618 Lcy2g0383 Lcy-Chr2:3172026 1.42E-40 dispersed
Lcy10g1030 Lcy-Chr10:32422889 Lcy1g0121 Lcy-Chr1:1033618 4.54E-111 transposed
Lcy5g2353 Lcy-Chr5:46363129 Lcy1g0121 Lcy-Chr1:1033618 8.63E-25 transposed
Lcy7g0692 Lcy-Chr7:6404255 Lcy1g0121 Lcy-Chr1:1033618 4.95E-113 transposed
Lcy9g1265 Lcy-Chr9:37269186 Lcy1g0121 Lcy-Chr1:1033618 2.83E-20 transposed
Lcy1g0121 Lcy-Chr1:1033618 Lcy5g1665 Lcy-Chr5:38858268 7.54E-110 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0121 K12486 - csv:101218116 604.749