Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0127 ATGCTGGTCGTCCCACAGGGAGGCACCGACGAGAAACGTATGAGCACAGGGAGCGTTGTGGATTTGAACGGTGCGTGTCCTTCAGAACTCAAGGCACCCTCTGCTTATCCATATCCAGATCCTTATTACAGAAGCATCTTTTCTCCTTATGATGCTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCTATGGTCCATCTTCAGTTAATGGGAATTCAACAAGCTGGGGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTGAATGCTAAACAGTATCATGGCATTTTACGACGTCGACAGTCCCGTGCAAAAGCTGAATCAGAAAATAAAGCTCTGAAGTCTAGGAAGCCATACTTGCATGAATCTCGACATTTGCATGCATTGAGGAGAGCTAGGGGTTGTGGTGGGCGGTTTCTCAAATCAAATAAAAATGAGAATCAACGAAATGAAGTGGCATCAGGTGATAGATCACAGTCCAATATAAATCTGAATTCTGATAAAAGTGATCTAGCTTCTTCAGAGAACTGA 540 44.81 MLVVPQGGTDEKRMSTGSVVDLNGACPSELKAPSAYPYPDPYYRSIFSPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENQRNEVASGDRSQSNINLNSDKSDLASSEN 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1084152 1087710 + Maker00011769 Lcy1g0127 622039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0127 179 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 29 169 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Lcy1g0127 179 PRINTS CCAAT-binding transcription factor subunit B signature 119 142 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g0127 179 PRINTS CCAAT-binding transcription factor subunit B signature 88 110 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g0127 179 MobiDBLite consensus disorder prediction 144 179 - -
Lcy1g0127 179 ProSitePatterns NF-YA/HAP2 subunit signature. 90 110 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Lcy1g0127 179 MobiDBLite consensus disorder prediction 138 179 - -
Lcy1g0127 179 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 87 142 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g0127 179 SMART cbf3 84 145 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g0127 179 Gene3D - 85 146 - -
Lcy1g0127 179 ProSiteProfiles NF-YA/HAP2 family profile. 85 145 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0127 Lcy-Chr1:1084152 Lcy4g2252 Lcy-Chr4:49061923 2.26E-32 dispersed
Lcy1g0127 Lcy-Chr1:1084152 Lcy3g1906 Lcy-Chr3:46293655 2.31E-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19483 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0127 K08064 - csv:101205549 272.322