Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0127 ATGCTGGTCGTCCCACAGGGAGGCACCGACGAGAAACGTATGAGCACAGGGAGCGTTGTGGATTTGAACGGTGCGTGTCCTTCAGAACTCAAGGCACCCTCTGCTTATCCATATCCAGATCCTTATTACAGAAGCATCTTTTCTCCTTATGATGCTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCTATGGTCCATCTTCAGTTAATGGGAATTCAACAAGCTGGGGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTGAATGCTAAACAGTATCATGGCATTTTACGACGTCGACAGTCCCGTGCAAAAGCTGAATCAGAAAATAAAGCTCTGAAGTCTAGGAAGCCATACTTGCATGAATCTCGACATTTGCATGCATTGAGGAGAGCTAGGGGTTGTGGTGGGCGGTTTCTCAAATCAAATAAAAATGAGAATCAACGAAATGAAGTGGCATCAGGTGATAGATCACAGTCCAATATAAATCTGAATTCTGATAAAAGTGATCTAGCTTCTTCAGAGAACTGA 540 44.81 MLVVPQGGTDEKRMSTGSVVDLNGACPSELKAPSAYPYPDPYYRSIFSPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENQRNEVASGDRSQSNINLNSDKSDLASSEN 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1084152 1087710 + Maker00011769 Lcy1g0127 622039

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0127 179 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 29 169 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Lcy1g0127 179 PRINTS CCAAT-binding transcription factor subunit B signature 119 142 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g0127 179 PRINTS CCAAT-binding transcription factor subunit B signature 88 110 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g0127 179 MobiDBLite consensus disorder prediction 144 179 - -
Lcy1g0127 179 ProSitePatterns NF-YA/HAP2 subunit signature. 90 110 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Lcy1g0127 179 MobiDBLite consensus disorder prediction 138 179 - -
Lcy1g0127 179 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 87 142 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g0127 179 SMART cbf3 84 145 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g0127 179 Gene3D - 85 146 - -
Lcy1g0127 179 ProSiteProfiles NF-YA/HAP2 family profile. 85 145 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0127 K08064 - - csv:101205549 272.322
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0127 Lcy-Chr1:1084152 Lcy4g2252 Lcy-Chr4:49061923 2.26E-32 dispersed
Lcy1g0127 Lcy-Chr1:1084152 Lcy3g1906 Lcy-Chr3:46293655 2.31E-32 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy8g2090 . 1 273 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.3 4.1e-59 225.7
Lcy2g1215 . 1 233 CCAAT-HAP2 Transcription Factor Family AT3G20910 52.9 5.2e-47 185.7
Lcy1g0127 . 26 177 CCAAT-HAP2 Transcription Factor Family AT2G34720 55.2 5.3e-38 154.8
Lcy1g0127 . 32 177 CCAAT-HAP2 Transcription Factor Family AT1G30500 62.3 2.4e-42 169.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004501 2 1 2 2 2 1 2 1 1 1 1 2 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19483 None None None None Lcy TF