Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0128 ATGGCGCTTGTTATGCACAAAGATTCATCAAATAAACAGATGGATACAAGCAAATACGTACGTTATACACCCGAGCAAGTTGAGGCATTAGAGAGAGTTTATGCAGAATGTCCAAAGCCCAGTTCTCTTAGAAGGCAGCAGCTCATTAGAGAGTGCCCAATCCTTTCTAATATTGAGCCTAAACAAATCAAAGTTTGGTTTCAAAATCGCAGATGCCGTGAGAAGCAGAGGAAGGAATCTTCTCGCCTCCAGAGCGTAAATCGAAAGCTGTCTGCGATGAACAAATTGTTGATGGAGGAGAATGACCGTTTACAGAAGCAGGTGTCCCATTTGGTTTATGAGAATGGATATATGCGCCAGCAACTGCATAGTGCATCTGGGACGACTACAGACAATAGCTGTGAGTCTGTAGTCATGAGCGGTCAGCCCCAACAACAGCAAAACCCAAATCCTCAGCATCCCAATAGGGATGTTAACAACCCAGCTGGTCTTCTTGCGGTAGCTGAGGAGACCCTGGCAGAGTTCCTTTCCAAGGCTACAGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAACTGCAGTGGGGTAGCAGCGCGAGCCTGTGGTCTTGTTAGTCTAGAGCCGACAAAGGTTGCAGAAATTCTTAAAGATCGCCTTTCATGGTATCGTGACTGTCGCTGTCTTAATGTTTTAAGTGTAATCCCTACTGGAAATGGGGGAACAATTGAACTCATATATATGCAGACCTATGCTCCAACAACATTAGCAGCAGCACGTGACTTCTGGACTATGAGATATACAACAAGTTTAGAAGATGGCAGTCTAGTGGTCTGTGAGAGGTCATTAACTTCTTCAAGTGGTGGCCCAGCAGGGCCTCCGCCATCTACTTTTGTGAGAGCTGAAATGCTTCCTAGTGGCTATTTAATACGAGCTTGCGAGGGCGGTGGATCGATTATTCACATTGTTGATCACATTGATTTGGATGTGAGCTTTCAACTTCAAGTTTGGAGTGTCCCTGAAGTTCTTAGGCCACTTTACGAGTCATCCAAGATCCTCGCTCAGAAAATGACAATTTCTGCATTACGTCACATTAGACAAATTGCTCAAGAGACTAATGGAGAGATTCAATATAGTGGTGGACGTCAACCAGCTGTACTACGGACATTTAGTCAAAAACTTTGCAGGGGTTTCAATGATGCTGTTAATGGGTTTGCGGATGATGGTTGGTCACCTATGGGCAGTGATGGATTGGAGGATGTGACAATTGTCATAAACTCATCAGCAAACAAGTTTCCAGGTTCCCAGTACAGCACGTCTATGTATCCCTCCTTTGGCGGAGGTGTGATGTGCGCAAAAGCATCGATGTTGCTTCAGAATGTTCCCCCTGCTTTGCTTGTTCGATTCCTGAGAGAGCATCGGTCTGAATGGGCTGATTATGGAGTTGATGCCTACTCTGCTGCGAGTCTAAAAGCCAGTCCATATGCTGTTCCATGTGCAAGGCCTGGTGGCTTCCCAAGCAGCCAGGTCATTTTGCCTCTTGCTCATACTGTGGAGCACGAGGAGTTTTTGGAGGTGGTTCGACTGGAGGGCCTTGCATTCTCCCCTGAAGACGTTGCTTTGGCCGGACGAGATATGTACTTATTGCAGCTCTGTAGTGGAGTTGATGAGAATGCAATTGGAGCTTGTGCTCAGCTTGTGTTTGCACCTATAGATGAATCTTTTGCTGATGATGCTCCTCTACTTCCTTCTGGGTTTCGTGTCATACCATTGGATCCTAAAACGGATGAACCTACTGCTGCTCGAACATTGGACTTGGCCTCTACTCTTGAAGTTGGTGCCAATGCTGCACGTTCTGCTGGTGAAACTGATTTGAGCAGCTACAATCTTCGGTCAGTCTTGACTATTGCCTTTCAGTTTACTTTCGAGAATCACTTGCGGGAAAATGTGGCTGCTATGGCTCGACAATACGTTCGCAGTGTTGTGGGGTCTGTTCAGAGGGTTGCCATGGCCATTGCCCCATCACGGCTGAGTTCCAATATGGGACTAAAGCCCCTTCCTGGTTCTCCTGAAGCTCTTACTTTGGCTCGATGGATTTGCCGAAGCTACAGGATCCATGTTGGAGCTGAGCTCCTTCAAGCCGACTCCCAATCTGGGGATGCCATGTTGAAGCAGCTCTGGCACCACTCAGATGCAATCATGTGTTGCTCCGTCAAAACCAATGCATCTGCTGTTTTCACCTTTGCTAACCAGGCTGGTCTGGACATGCTTGAAACCACTCTTGTTGGCCTGCAAGATATAATGCTCGACAAAATTCTCGATGAAGCAGGTCGGAAGATTCTCTGTTCTGAGTTCCCCAAAATAATGCAGCAGGGATTTGCAAATCTTCCATCTGGTATATGCATATCCAGTATGGGCCGTCCCATTTCTTACGAGCAAGCTGTTGCCTGGAAGGTTCTCAATGATGATGATTCCAATCACTGTCTAGCTTTCATGTTCATAAACTGGTCTTTTGTGTGA 2562 46.72 MALVMHKDSSNKQMDTSKYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQSVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSASGTTTDNSCESVVMSGQPQQQQNPNPQHPNRDVNNPAGLLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPTKVAEILKDRLSWYRDCRCLNVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWTMRYTTSLEDGSLVVCERSLTSSSGGPAGPPPSTFVRAEMLPSGYLIRACEGGGSIIHIVDHIDLDVSFQLQVWSVPEVLRPLYESSKILAQKMTISALRHIRQIAQETNGEIQYSGGRQPAVLRTFSQKLCRGFNDAVNGFADDGWSPMGSDGLEDVTIVINSSANKFPGSQYSTSMYPSFGGGVMCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAASLKASPYAVPCARPGGFPSSQVILPLAHTVEHEEFLEVVRLEGLAFSPEDVALAGRDMYLLQLCSGVDENAIGACAQLVFAPIDESFADDAPLLPSGFRVIPLDPKTDEPTAARTLDLASTLEVGANAARSAGETDLSSYNLRSVLTIAFQFTFENHLRENVAAMARQYVRSVVGSVQRVAMAIAPSRLSSNMGLKPLPGSPEALTLARWICRSYRIHVGAELLQADSQSGDAMLKQLWHHSDAIMCCSVKTNASAVFTFANQAGLDMLETTLVGLQDIMLDKILDEAGRKILCSEFPKIMQQGFANLPSGICISSMGRPISYEQAVAWKVLNDDDSNHCLAFMFINWSFV 853
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1094770 1101140 + Maker00012076 Lcy1g0128 622040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0128 853 Gene3D - 9 85 - -
Lcy1g0128 853 SMART HOX_1 15 81 IPR001356 GO:0003677(InterPro)
Lcy1g0128 853 Pfam START domain 167 380 IPR002913 GO:0008289(InterPro)
Lcy1g0128 853 SUPERFAMILY Homeodomain-like 18 79 IPR009057 -
Lcy1g0128 853 SMART START_1 166 382 IPR002913 GO:0008289(InterPro)
Lcy1g0128 853 Gene3D - 200 389 IPR023393 -
Lcy1g0128 853 MobiDBLite consensus disorder prediction 123 160 - -
Lcy1g0128 853 CDD START_ArGLABRA2_like 161 383 - -
Lcy1g0128 853 Pfam MEKHLA domain 708 852 IPR013978 -
Lcy1g0128 853 ProSiteProfiles START domain profile. 157 391 IPR002913 GO:0008289(InterPro)
Lcy1g0128 853 MobiDBLite consensus disorder prediction 123 157 - -
Lcy1g0128 853 FunFam Homeobox-leucine zipper protein REVOLUTA 18 73 - -
Lcy1g0128 853 CDD bZIP 70 109 - -
Lcy1g0128 853 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677(InterPro)
Lcy1g0128 853 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 12 853 IPR044830 GO:0003700(InterPro)
Lcy1g0128 853 Pfam Homeodomain 18 76 IPR001356 GO:0003677(InterPro)
Lcy1g0128 853 SUPERFAMILY Bet v1-like 167 384 - -
Lcy1g0128 853 Coils Coil 83 107 - -
Lcy1g0128 853 CDD homeodomain 18 78 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0449 Lcy-Chr11:9211654 Lcy1g0128 Lcy-Chr1:1094770 0 dispersed
Lcy1g0128 Lcy-Chr1:1094770 Lcy3g2146 Lcy-Chr3:48383582 0 dispersed
Lcy1g0128 Lcy-Chr1:1094770 Lcy5g1666 Lcy-Chr5:38885621 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19484 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0128 K09338 - csv:101210154 1628.22