Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0151 ATGAGGCTTTCAACTGCTGGTTTTAGTCCTCAGGCCCCGGAAGGGGAGAGGAGAGTTCTTAACTCGGAGCTTTGGCATGCTTGTGCGGGCCCTCTTGTTTCTCTACCTGCTGTTGGAAGTCGGGTTGTTTACTTTCCACAGGGTCACAGCGAGCAGCTTCCCATGAAACTTTTGATTCCCGTTCATCAGTTGTTTTCAATCTGGCTGAATGGACTTGTTGCCATATCAACCAACAGAGAAGTGGATGCCCATATACCTAGTTATCCAAGCTTGCCGCCACAACTTATCTGCCAGCTTCACAATGTTACCATGCATGCAGATGTTGAGACAGATGAAGTGTATGCTCAAATGACCTTGCAACCGCTCAGTGCTCAAGAGCAAAAGGAGCCCTATCTTCCAGCTGAGTTGGGTGCTCCCAGCAAACAACCAACCAATTATTTTTGTAAAACGTTGACAGCAAGTGACACAAGTACACATGGAGGATTTTCTGTTCCTCGTCGTGCTGCTGAAAAAGTGTTTCCTCCTTTGGACTTTACTCAGCAACCACCTGCTCAGGAGTTGATTGCAAGGGATCTGCACGATAATGAATGGAAATTTAGGCATATCTTTCGTGCTAATCGACCACAGACGGTGATGCCCTCATCAGTTTTATCTAGTGACAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCCCATGCAGCTGCTACAAATAGTCGGTTCACGATATTTTATAATCCGAGGGCTAGCCCATCAGAGTTCATCATACCTCTGGCCAAGTATGTCAAAGCTGTGTACCATACCCGTGTTTCAGTCGGTATGCGTTTTAGAATGCTATTTGAAACAGAAGAATCGAGCGTTCGTCGTTACATGGGCACTATTACTGGCATCAGCGATTTAGATCCTGCCCGGTGGCCAAACTCACACTGGCGCTCAGTCAAGGTTGGATGGGATGAATCTACAGCTGGGGAGAGACAGCCAAGGGTTTCCTTATGGGAGATCGAGCCACTAACGACCTTCCCAATGTATCCGTCTCCATTTCCCCTCAGGCTTAAGCGACCCTGGCCAACTGGATTGCCCTCTTTCCATGGTCTCAAAGAGGATGATCTGGGATTAAATTCTCAACTAATGTGGCTACGGGGAGATGGTTTAGATCGTGGAATTCAACCTCTCAACTTCGGAATTGGAGTTGCACCATGGATGCAGCCGAGGCTTGATGCTTCTATGGTCGGTCTGCAGCCGGAGATATATCAAGCAATGGCTGCTGCTGCACTACAGGAGATGAGAACCCAGAGTTTTTCTGATTCAAATGCCAACCATGTGACAAGTCCTATCATTTCACCATTGCACAGCCTGTTAGGTTCATTTCCACAAGACGAAGCGTCTCAGTTGCTTAATCTGCCTCGAACCAATCCCATGATACATTCATCTACATGGCCATCAAAGCGAGCTGCAGTCGATCCTCTTCTCTCTTCTGGAAATTCGCAGTTTGTTCTTCCCCAGGGGGAAAACATGGGGACAACTCAGACCAATATCTCTCAGAATGCTATTTCATTGCCGCCTTTTCCTGGTAGAGAGTGTTCATTAGATCAAGGGAATGCTGACCCGCAGAGTAATCTTCTCTTCGGTGTCAATATCGAGCCTTCATCTCTTCTAATGCAGAATGGCATGCCTAATCTTAGGGGAATCTGCAGTGACAGTGACTCAACAGCTATACCTTTTTCGTCCAATTATGTGAATACTCCTGGTACCAACTTCTCTGCCAATGCAACTGGGACACCTTCCAATTGCATTGAGGATTCTTCAGGTTTCTTGCAGTCTCCAGAAAACACAGGCCAAGTTTACAAGTCAGGGTCCTTCGGTAGATCGCTGGATATTTCCAAATTCAGCAGTTACCATCAGTTACGCAGTGAGCTCGCTCACATGTTCAACCTTGAAGGCGAGTTGGAGGACCCTTTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAAAATGACGTCCTTCTTCTTGGGGACGATCCCTGGCCGGAGTTTGTCAACAGCGTGTGGTGTATCAAAATACTTTCACCACAGGAAGTGCAGGAGATGGGCAAACGAGGCCTAGAGCTCTTGAACTCGGTCCCAATTCAGAGGCTCTCGAATGGCAGTTGTGATAACTATGCCAACAGACAGGAGTCATCCAGAAATTTGAGTACCGGGATAACTTCTGTCGGGTCTCTCAAGTACTGA 2229 47.64 MRLSTAGFSPQAPEGERRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQLPMKLLIPVHQLFSIWLNGLVAISTNREVDAHIPSYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSAQEQKEPYLPAELGAPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELIARDLHDNEWKFRHIFRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGLPSFHGLKEDDLGLNSQLMWLRGDGLDRGIQPLNFGIGVAPWMQPRLDASMVGLQPEIYQAMAAAALQEMRTQSFSDSNANHVTSPIISPLHSLLGSFPQDEASQLLNLPRTNPMIHSSTWPSKRAAVDPLLSSGNSQFVLPQGENMGTTQTNISQNAISLPPFPGRECSLDQGNADPQSNLLFGVNIEPSSLLMQNGMPNLRGICSDSDSTAIPFSSNYVNTPGTNFSANATGTPSNCIEDSSGFLQSPENTGQVYKSGSFGRSLDISKFSSYHQLRSELAHMFNLEGELEDPLRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQEMGKRGLELLNSVPIQRLSNGSCDNYANRQESSRNLSTGITSVGSLKY 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1404121 1410801 + Maker00011636 Lcy1g0151 622063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0151 742 FunFam Auxin response factor 604 697 - -
Lcy1g0151 742 Gene3D - 268 340 - -
Lcy1g0151 742 CDD B3_DNA 146 212 IPR003340 GO:0003677(InterPro)
Lcy1g0151 742 Gene3D - 145 221 IPR015300 -
Lcy1g0151 742 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 204 699 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lcy1g0151 742 Pfam Auxin response factor 230 312 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lcy1g0151 742 Gene3D - 605 697 - -
Lcy1g0151 742 Pfam B3 DNA binding domain 147 212 IPR003340 GO:0003677(InterPro)
Lcy1g0151 742 SUPERFAMILY DNA-binding pseudobarrel domain 132 230 IPR015300 -
Lcy1g0151 742 ProSiteProfiles PB1 domain profile. 608 692 IPR053793 -
Lcy1g0151 742 FunFam Auxin response factor 268 340 - -
Lcy1g0151 742 SUPERFAMILY CAD & PB1 domains 622 683 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1089 Lcy-Chr10:33094954 Lcy1g0151 Lcy-Chr1:1404121 2.56E-159 dispersed
Lcy10g1091 Lcy-Chr10:33126181 Lcy1g0151 Lcy-Chr1:1404121 3.56E-72 dispersed
Lcy1g0151 Lcy-Chr1:1404121 Lcy9g2249 Lcy-Chr9:47000188 9.29E-150 dispersed
Lcy1g0151 Lcy-Chr1:1404121 Lcy5g1695 Lcy-Chr5:39392044 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19485 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0151 K14486 - gmx:100814479 758.829