Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0158 ATGGCTTCCAGGTCCGGCAGTCATAACAAAACGCGAGTGGGGAGGTATGAGCTGGGACGAACCCTTGGAGAGGGCAGCTTCGCCAAGGTTAAGTTCGCTCGGAATTGCGAGACAGGGGAAAACGTGGCCATCAAAATCCTCGACAAAGAGAAGATTCTCAAGCACAAGATGATCGGGCAGATTAAACGTGAAATATCAACAATGAAACTCATTAGACATCCAAACGTCATACGCATGTATGAGGTGATGGCTAGCAAGACCAAGATATATATTGTTTTGGAATTTGTAACTGGTGGAGAACTATTTGACAAAATTGTGAGATATAGTGCCTGCTTTTATCTTGTATCCATGCATGCAATTGTAACTGGCAATTCAACTAGTATTTATTCTTTTTCCTTGATCCAGTCAAGCAAGGGAAGATTGAAAGAAGATGAAGCAAGAAAGTATTTTCAGCAGCTTATAAATGCTGTGGATTATTGCCATAGCAGAGGTGTTTGTCATCGAGACCTAAAGCCAGAGAATTTATTGTTGGATGCTAGTGGTGTTCTAAAAGTTTCAGATTTCGGATTGAGTGCTCTACCTCAACAAGTTCGAGACGATGGATTACTTCACACAACATGTGGAACACCCAATTATGTTGCTCCAGAGGTTATCAATAATAAAGGCTACTATGGAGCAAAGGCTGACCTATGGTCATGTGGGGTTATCCTTTTTGTCCTCATGGCAGGCTATTTGCCATTTGAAGAATCCAGTCTCATGGCTTTGTATAAGAAGATATTCAAGGCTGACTTCACGTGTCCTCCATGGTTCTCCTCAAGTGCCAAGAAATTAATCAAGAGAATCCTGGATCCGAATCCATTGACTAGAATTACAATTGCCGAGGTCCTCGAGAATGATTGGTTTAGGAAAGGATACAAGGCACCCACTTTTGAAAATGACGAAATCAATCTTGATAACAACATTGATGACATCTTTAATGAATCAGAGTCGGATCATAACCTTGTTGTTGAGAGAAGAGAAGATAGACCTGCGTCACCTGTCACCATGAATGCATTTGAGCTCATCTCGAAATCTCGGGGCCTCAACCTTGCGTCTCTTTTTGAGAAGCAAATGGGGCTAATTAAACGTGAAACGAGATTCACATCCAATCGTCCTGCGGATGAAATCATTTCCAAGATTGAAAAAACTGCAGTTCCTTTGGGCTTTGATGTGAAGATTAACAACTTCAAGATGAAGCTCCAAGGGGAAAAAACTGGACGTAAAGGTCATTTATCGATTGCAACAGAGATTTTTCAGGTTGCTCCTTCATTGCACATGGTGGAGCTTCGCAAAGCTGGAGGTGATACTTTAGAATTTCAAAAGTTCTATAACAACCTCTCAACTGGACTGAAAGATATTGTATGGAGATATGGAGATGAGATGGAGCAGGAAACTAATGGTGCAGATGGTTGA 1452 41.46 MASRSGSHNKTRVGRYELGRTLGEGSFAKVKFARNCETGENVAIKILDKEKILKHKMIGQIKREISTMKLIRHPNVIRMYEVMASKTKIYIVLEFVTGGELFDKIVRYSACFYLVSMHAIVTGNSTSIYSFSLIQSSKGRLKEDEARKYFQQLINAVDYCHSRGVCHRDLKPENLLLDASGVLKVSDFGLSALPQQVRDDGLLHTTCGTPNYVAPEVINNKGYYGAKADLWSCGVILFVLMAGYLPFEESSLMALYKKIFKADFTCPPWFSSSAKKLIKRILDPNPLTRITIAEVLENDWFRKGYKAPTFENDEINLDNNIDDIFNESESDHNLVVERREDRPASPVTMNAFELISKSRGLNLASLFEKQMGLIKRETRFTSNRPADEIISKIEKTAVPLGFDVKINNFKMKLQGEKTGRKGHLSIATEIFQVAPSLHMVELRKAGGDTLEFQKFYNNLSTGLKDIVWRYGDEMEQETNGADG 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1470580 1476249 - Maker00011692 Lcy1g0158 622070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0158 483 Pfam NAF domain 346 405 IPR004041 GO:0007165(InterPro)
Lcy1g0158 483 FunFam Non-specific serine/threonine protein kinase 7 95 - -
Lcy1g0158 483 Gene3D Kinase associated domain 1, KA1 344 469 - -
Lcy1g0158 483 SMART serkin_6 16 301 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0158 483 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 7 457 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Lcy1g0158 483 Pfam Protein kinase domain 16 301 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0158 483 ProSiteProfiles Protein kinase domain profile. 16 301 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0158 483 CDD STKc_SnRK3 15 300 - -
Lcy1g0158 483 Gene3D Phosphorylase Kinase; domain 1 5 95 - -
Lcy1g0158 483 FunFam Non-specific serine/threonine protein kinase 128 308 - -
Lcy1g0158 483 FunFam Non-specific serine/threonine protein kinase 343 469 - -
Lcy1g0158 483 Gene3D Transferase(Phosphotransferase) domain 1 130 309 - -
Lcy1g0158 483 ProSiteProfiles NAF domain profile. 344 368 IPR018451 GO:0007165(InterPro)
Lcy1g0158 483 SUPERFAMILY Protein kinase-like (PK-like) 13 309 IPR011009 -
Lcy1g0158 483 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0158 483 CDD CIPK_C 350 465 - -
Lcy1g0158 483 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g2086 Lcy-Chr11:44391794 Lcy1g0158 Lcy-Chr1:1470580 3.19E-206 dispersed
Lcy1g0158 Lcy-Chr1:1470580 Lcy5g1821 Lcy-Chr5:40981273 2.59E-160 dispersed
Lcy1g0158 Lcy-Chr1:1470580 Lcy5g1703 Lcy-Chr5:39519352 8.90E-263 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65603 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0158 - - - 0.0