Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy1g0187 | ATGAATTCGCTTTTCGCTTTTCTTTCGCCGCTGCTTCCGTTTGTGGCCTCTCTCGTTTTTCTCGTCATCTTCCTCGAGCAGATCTCTTATTTGAAGAAGAAACGCTCTGTTCCTGGTCCTCCTCTCGTTCTCCCCTTCGTCGGCAACGCAATTCCTCTTGTCCGAAACCCTGCCCGTTTCTGGGAAATCCAGGCTTCTCTGGCCAAATCCTCCGGTATCGGCTTCTCCGTCAACTACATCGCCGGTAATTTCATCGTCTTCATTCGCGACACTGAGCTCTCTCACAAGATTTTCGCCAATGTCCGTTCCGATGCCATGAATCTCGTCGGTCATCCCTTCGGGAAGAAGCTATTCGGCGAGGATAATCTGATTTACATGTTAGGGCAAAAGCATAAGGATCTCCGCCGTCGAATCGCTCCTAATTTCACGCCCAAGGCGCTTTCCACCTACACCGCGCTTCAGCAGATCATCATTCTCAAGCACTTGAAGCTTTGGGATCAGAAGTCCTCAGAATCCTCGCCGAAGCCGATTCCGTTGAGGTTTTTCGCTCGAGATCTTAACCTCGAAACCTCTCAGATGGTGTTCGTCGGGCCATACTTAGGCGAAGAGGTTCGCGAGAAGTTCAGAATCGATTACAACGTCTTCAATGTCGGCCTGATGAAACTGCCGATCGATTTGCCGGGAACAGGTTTTAGAAACGCGAGACTCGCCGTCGACCGGCTGGTGGAGGTCCTCGCCGACTGCGCGGGGAAGAGCAAGGCGAAGATGAGGAGAGAAGAAGAGCCGTCATGTTTGATCGATTTTTGGATGCAGGATACCGTGAAGGAACTCGAGGCGGCGGCGGCCGCCGGCCAGCCGGAGCCGGTTCACACCAGTAACTTCGAGCTCGGACTCTACCTCTTCGACTTCCTCTTCGCCGCTCAAGACGCTTCAACCTCATCGCTTCTGTGGGCCGTCAGTCTCCTCGATTCGCATCCCGAGGTCGTCGCCAAAGTTCGCGACGAAGTCAAATCCATCTGGTCGCCGGAATCGGACTCACTCATCTCATCGGAGCAGCTTCTGGAAATGAAGTACACGCAGGCGGTGGCGCGCGAGGTGGTCCGTTACCGGGCTCCGGCGACCGTCGTTCCACACGTGGCGGCGGCGGAGTTCCCGCTGACGGATTCATACACGATCCCAAAAGGAGCAATCGTGTTCCCATCTGCGTACGAGTCGAGCTTTCAGGGTTTCGTGGAACCGGACCGGTTCGACCCAGACCGGTTCTCGGATGACCGTCAAGAGGACCGGATTTTCAAAAGGAACTTTCTGGCATTCGGGGCTGGGTCCCACCAGTGCGTAGGGCAACGGTACGCGCTGAACCAACTAGTGCTCTTCATCGCCATGTTTTGTTCGTTGCTTGATTTCAAGCGGCACAGATCCGACGGCTGTGATGAAATCGCCTTCAATCCCACTATCTGTCCCAAAGATGACTGCATGGTCTCCATCTGTAGGCGTTGCCCTCGATTCCCCAATTTGTCCCTCGAATAA | 1527 | 54.42 | MNSLFAFLSPLLPFVASLVFLVIFLEQISYLKKKRSVPGPPLVLPFVGNAIPLVRNPARFWEIQASLAKSSGIGFSVNYIAGNFIVFIRDTELSHKIFANVRSDAMNLVGHPFGKKLFGEDNLIYMLGQKHKDLRRRIAPNFTPKALSTYTALQQIIILKHLKLWDQKSSESSPKPIPLRFFARDLNLETSQMVFVGPYLGEEVREKFRIDYNVFNVGLMKLPIDLPGTGFRNARLAVDRLVEVLADCAGKSKAKMRREEEPSCLIDFWMQDTVKELEAAAAAGQPEPVHTSNFELGLYLFDFLFAAQDASTSSLLWAVSLLDSHPEVVAKVRDEVKSIWSPESDSLISSEQLLEMKYTQAVAREVVRYRAPATVVPHVAAAEFPLTDSYTIPKGAIVFPSAYESSFQGFVEPDRFDPDRFSDDRQEDRIFKRNFLAFGAGSHQCVGQRYALNQLVLFIAMFCSLLDFKRHRSDGCDEIAFNPTICPKDDCMVSICRRCPRFPNLSLE | 508 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 1755995 | 1757521 | + | Maker00011975 | Lcy1g0187 | 622099 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy1g0187 | 508 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 438 | 447 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lcy1g0187 | 508 | FunFam | Cytochrome P450 61 | 27 | 498 | - | - | |
| Lcy1g0187 | 508 | Gene3D | Cytochrome P450 | 28 | 501 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g0187 | 508 | SUPERFAMILY | Cytochrome P450 | 30 | 498 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g0187 | 508 | PRINTS | E-class P450 group I signature | 399 | 423 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g0187 | 508 | PRINTS | E-class P450 group I signature | 435 | 445 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g0187 | 508 | PRINTS | E-class P450 group I signature | 445 | 468 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g0187 | 508 | PRINTS | E-class P450 group I signature | 315 | 341 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g0187 | 508 | PANTHER | CYTOCHROME P450 26 | 38 | 462 | - | GO:0016125(PANTHER)|GO:0016491(PANTHER) | |
| Lcy1g0187 | 508 | CDD | CYP61_CYP710 | 74 | 491 | - | - | |
| Lcy1g0187 | 508 | Pfam | Cytochrome P450 | 38 | 469 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g0187 | 508 | PRINTS | P450 superfamily signature | 306 | 323 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g0187 | 508 | PRINTS | P450 superfamily signature | 436 | 445 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g0187 | 508 | PRINTS | P450 superfamily signature | 361 | 372 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g0187 | 508 | PRINTS | P450 superfamily signature | 445 | 456 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy1g0187 | Lcy-Chr1:1755995 | Lcy12g0941 | Lcy-Chr12:14415155 | 2.89E-06 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy1g0187 | K09832 | - | csv:101221194 | 924.08 |