Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0187 ATGAATTCGCTTTTCGCTTTTCTTTCGCCGCTGCTTCCGTTTGTGGCCTCTCTCGTTTTTCTCGTCATCTTCCTCGAGCAGATCTCTTATTTGAAGAAGAAACGCTCTGTTCCTGGTCCTCCTCTCGTTCTCCCCTTCGTCGGCAACGCAATTCCTCTTGTCCGAAACCCTGCCCGTTTCTGGGAAATCCAGGCTTCTCTGGCCAAATCCTCCGGTATCGGCTTCTCCGTCAACTACATCGCCGGTAATTTCATCGTCTTCATTCGCGACACTGAGCTCTCTCACAAGATTTTCGCCAATGTCCGTTCCGATGCCATGAATCTCGTCGGTCATCCCTTCGGGAAGAAGCTATTCGGCGAGGATAATCTGATTTACATGTTAGGGCAAAAGCATAAGGATCTCCGCCGTCGAATCGCTCCTAATTTCACGCCCAAGGCGCTTTCCACCTACACCGCGCTTCAGCAGATCATCATTCTCAAGCACTTGAAGCTTTGGGATCAGAAGTCCTCAGAATCCTCGCCGAAGCCGATTCCGTTGAGGTTTTTCGCTCGAGATCTTAACCTCGAAACCTCTCAGATGGTGTTCGTCGGGCCATACTTAGGCGAAGAGGTTCGCGAGAAGTTCAGAATCGATTACAACGTCTTCAATGTCGGCCTGATGAAACTGCCGATCGATTTGCCGGGAACAGGTTTTAGAAACGCGAGACTCGCCGTCGACCGGCTGGTGGAGGTCCTCGCCGACTGCGCGGGGAAGAGCAAGGCGAAGATGAGGAGAGAAGAAGAGCCGTCATGTTTGATCGATTTTTGGATGCAGGATACCGTGAAGGAACTCGAGGCGGCGGCGGCCGCCGGCCAGCCGGAGCCGGTTCACACCAGTAACTTCGAGCTCGGACTCTACCTCTTCGACTTCCTCTTCGCCGCTCAAGACGCTTCAACCTCATCGCTTCTGTGGGCCGTCAGTCTCCTCGATTCGCATCCCGAGGTCGTCGCCAAAGTTCGCGACGAAGTCAAATCCATCTGGTCGCCGGAATCGGACTCACTCATCTCATCGGAGCAGCTTCTGGAAATGAAGTACACGCAGGCGGTGGCGCGCGAGGTGGTCCGTTACCGGGCTCCGGCGACCGTCGTTCCACACGTGGCGGCGGCGGAGTTCCCGCTGACGGATTCATACACGATCCCAAAAGGAGCAATCGTGTTCCCATCTGCGTACGAGTCGAGCTTTCAGGGTTTCGTGGAACCGGACCGGTTCGACCCAGACCGGTTCTCGGATGACCGTCAAGAGGACCGGATTTTCAAAAGGAACTTTCTGGCATTCGGGGCTGGGTCCCACCAGTGCGTAGGGCAACGGTACGCGCTGAACCAACTAGTGCTCTTCATCGCCATGTTTTGTTCGTTGCTTGATTTCAAGCGGCACAGATCCGACGGCTGTGATGAAATCGCCTTCAATCCCACTATCTGTCCCAAAGATGACTGCATGGTCTCCATCTGTAGGCGTTGCCCTCGATTCCCCAATTTGTCCCTCGAATAA 1527 54.42 MNSLFAFLSPLLPFVASLVFLVIFLEQISYLKKKRSVPGPPLVLPFVGNAIPLVRNPARFWEIQASLAKSSGIGFSVNYIAGNFIVFIRDTELSHKIFANVRSDAMNLVGHPFGKKLFGEDNLIYMLGQKHKDLRRRIAPNFTPKALSTYTALQQIIILKHLKLWDQKSSESSPKPIPLRFFARDLNLETSQMVFVGPYLGEEVREKFRIDYNVFNVGLMKLPIDLPGTGFRNARLAVDRLVEVLADCAGKSKAKMRREEEPSCLIDFWMQDTVKELEAAAAAGQPEPVHTSNFELGLYLFDFLFAAQDASTSSLLWAVSLLDSHPEVVAKVRDEVKSIWSPESDSLISSEQLLEMKYTQAVAREVVRYRAPATVVPHVAAAEFPLTDSYTIPKGAIVFPSAYESSFQGFVEPDRFDPDRFSDDRQEDRIFKRNFLAFGAGSHQCVGQRYALNQLVLFIAMFCSLLDFKRHRSDGCDEIAFNPTICPKDDCMVSICRRCPRFPNLSLE 508
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 1755995 1757521 + Maker00011975 Lcy1g0187 622099
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0187 508 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 438 447 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Lcy1g0187 508 FunFam Cytochrome P450 61 27 498 - -
Lcy1g0187 508 Gene3D Cytochrome P450 28 501 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy1g0187 508 SUPERFAMILY Cytochrome P450 30 498 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy1g0187 508 PRINTS E-class P450 group I signature 399 423 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy1g0187 508 PRINTS E-class P450 group I signature 435 445 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy1g0187 508 PRINTS E-class P450 group I signature 445 468 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy1g0187 508 PRINTS E-class P450 group I signature 315 341 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy1g0187 508 PANTHER CYTOCHROME P450 26 38 462 - GO:0016125(PANTHER)|GO:0016491(PANTHER)
Lcy1g0187 508 CDD CYP61_CYP710 74 491 - -
Lcy1g0187 508 Pfam Cytochrome P450 38 469 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy1g0187 508 PRINTS P450 superfamily signature 306 323 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy1g0187 508 PRINTS P450 superfamily signature 436 445 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy1g0187 508 PRINTS P450 superfamily signature 361 372 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy1g0187 508 PRINTS P450 superfamily signature 445 456 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0187 Lcy-Chr1:1755995 Lcy12g0941 Lcy-Chr12:14415155 2.89E-06 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0187 K09832 - csv:101221194 924.08