Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy1g0195 | ATGGACGTCGGTGAAGAAATTAGGGCAGCTCACAAGCGAGACTTTCTGGAATTCCTTGAACAGGATGTGCGTTTTGTTGGGAAAGGTATTTACATGGACGAGATCAAAGCCATGATCAATCATAAGCGACATCGCCTTATAATCAACATTTCTGATCTCCATTCGTTCAGAGACCTTGGTCCCAGGGTGCTCAGGAATCCCAGCGAGTACATTCAACCATTCTGCGATGCAGTCACAGAAACTGCTCGCAGTATTGATCCAAAATACCTCAAGGAAGGAGAGCAAGTTTTAGTGGGCTTTGAGGGCCCCTTTGTTTCTCGCCGTGTCACTCCCAGGGAACTTCTCTCTCAATTCATTGGCTCCATGGTCTGCGTTGAGGGCATTGTTACCAAATGTTCTCTTGTTAGACCAAAAGTTGTCAAAAGTGTTCACTTCTGCCCAACAACTGGGGGTTTTACCAGCCGTGAATACCGTGACATTACATCCAACATGGGCTTGCCCACAGGATCTGTGTATCCCACAAGGGATGAAAATGGAAACTTGTTGGTTACTGAGTATGGCTTGTGTAGATATAAAGATCATCAGACCTTATCAATGCAAGAAATGCCTGAGAATTCAGCTCCTGGTCAGCTTCCAAGAACAGTGGATGTCATAGTTGAGGATGACTTAGTTGACTGTTGCAAGCCAGGTGATCGTGTTGCTATCGTAGGAATATATAAAGCTCTTCCAGGAAAAAGCAAGGGCAGCGTGAATGGAGTGTTCAGGACTATTCTTGTAGCTAACAACGTTTCTCTTCTAAACAAAGAGGCAAATGCACCAATATACAGTCCCGAGGACTTGAAAAATATTAAAAAGATAGCTGAAAGAGATGACACCTTTGACCTTCTCGGTAATTCTCTTGCACCTTCCATATATGGACATTCGTGGATAAAAAAAGCAGTGATACTATTGATGCTTGGTGGAGTGGAGAAAAACTTGAAGAATGGCACCCACTTAAGAGGTGATATCAACATGATGATGGTTGGTGATCCTTCTGTTGCCAAGTCTCAACTTTTAAGGGCGATTATGAATATTGCACCCTTGGCAATATCCACAACAGGCCGTGGTTCATCTGGCGTTGGGTTAACTGCTGCTGTTACTTCAGATCAGGAAACAGGAGAAAGAAGGCTAGAAGCTGGTGCAATGGTTCTTGCTGATCGAGGTGTTGTCTGTATTGATGAGTTTGACAAGATGAATGATCAAGATAGGGTTGCAATACATGAAGTTATGGAGCAGCAGACTGTGACTATTGCCAAAGCTGGCATTCATGCTTCACTGAATGCTCGGTGCAGTGTGGTAGCAGCTGCAAATCCCATATATGGATCTTACGATCGTTCATTGACACCAACAAAGAATATAGGTCTTCCAGACTCTCTACTCTCTCGATTTGATCTACTGTTTATTGTATTGGATCAAATGGATCCCGATATTGACCGTCATATTTCGGAACATGTATTGCGTATGCACCGGTTTCGTTCTGTTCTTGATGGAGGTAAGGAAATTGCATTCACTTGCTTCAAATTTAGTTCTAGACACTATTTAATTACCCTAAAACAATTAGGTGATGCTGGGGGCTCACTGTATGGAAGAGAGGATGAAGCTGAAGCTGACTCTTCTGTCTTTGTCAAGTATAATAGAATGCTTCATGGGAAGAAGACAGAACGTGGTCGGAAGCGTGATACCCTCACCATCAAGTTTCTTAAGAAGTACATTCATTATGCTAAGCATAGGATACAACCTGACCTAACTGATGAGGTGACCTTTTATTTGCTCTGGCTATATGCTGATTTTGTTTCACTTCTAATTCTGGATTGTGAAACGCAGGCATCTGAGCACATTGCAACTGCTTATGCTGAACTTAGAAATTCAACTTCAAATGCTAAGACTGGAGGAACTCTTCCAATTACTGCCAGAACCCTGGAAACCATTATACGACTCTCAACTGCTCATGCAAAACTGAAGTTAAGTAGAAAGGTTTCAAAATCTGATGTCGAAGCTGCCTTGAAAGTTCTTAATTTTGCCATATATCATAAAGAGTTGACTGAAATGGAAGAGCGTGAGCAAGAAAGGGAGAAGGAAATGGAAAGAAAACGTCGAGCTGAACATCAAACAGTGGAAGATGATAGACCAGAGCGTAGTACCAAAAGAAGAGAGGATAGCTCAAGAACAGATACCATGGAAATCGATGATCCTCCTACTGAACCTGTACTTGATCAGTCTGCAGAAAGAATAGAAGCATTCAATTCTTTATTTGGTCAGCACATGCGTGCAAACCACCTGGATCTTATATCTATTGCCGACATTGAGAATATCGTTAATGCTGGAGCAGATACTCGTTACACAACAGCTGAAATAATGTTGCTCTTGCAGAGACTGCAAGATGATAACAGGGTAATGATAGCTGATGACGTGGTGCATATGATATCATGA | 2469 | 42.32 | MDVGEEIRAAHKRDFLEFLEQDVRFVGKGIYMDEIKAMINHKRHRLIINISDLHSFRDLGPRVLRNPSEYIQPFCDAVTETARSIDPKYLKEGEQVLVGFEGPFVSRRVTPRELLSQFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPTTGGFTSREYRDITSNMGLPTGSVYPTRDENGNLLVTEYGLCRYKDHQTLSMQEMPENSAPGQLPRTVDVIVEDDLVDCCKPGDRVAIVGIYKALPGKSKGSVNGVFRTILVANNVSLLNKEANAPIYSPEDLKNIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGSYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRHISEHVLRMHRFRSVLDGGKEIAFTCFKFSSRHYLITLKQLGDAGGSLYGREDEAEADSSVFVKYNRMLHGKKTERGRKRDTLTIKFLKKYIHYAKHRIQPDLTDEVTFYLLWLYADFVSLLILDCETQASEHIATAYAELRNSTSNAKTGGTLPITARTLETIIRLSTAHAKLKLSRKVSKSDVEAALKVLNFAIYHKELTEMEEREQEREKEMERKRRAEHQTVEDDRPERSTKRREDSSRTDTMEIDDPPTEPVLDQSAERIEAFNSLFGQHMRANHLDLISIADIENIVNAGADTRYTTAEIMLLLQRLQDDNRVMIADDVVHMIS | 822 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 1792784 | 1798873 | - | Maker00011607 | Lcy1g0195 | 622107 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy1g0195 | 822 | ProSiteProfiles | MCM family domain profile. | 292 | 498 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lcy1g0195 | 822 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 5 | 769 | IPR031327 | GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006271(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:1902975(PANTHER) | |
| Lcy1g0195 | 822 | Pfam | MCM OB domain | 112 | 242 | IPR033762 | - | |
| Lcy1g0195 | 822 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 302 | 701 | IPR027417 | - | |
| Lcy1g0195 | 822 | Gene3D | - | 274 | 710 | IPR027417 | - | |
| Lcy1g0195 | 822 | SMART | mcm | 107 | 689 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lcy1g0195 | 822 | Gene3D | - | 5 | 102 | - | - | |
| Lcy1g0195 | 822 | FunFam | DNA helicase | 5 | 107 | - | - | |
| Lcy1g0195 | 822 | Gene3D | - | 138 | 192 | - | - | |
| Lcy1g0195 | 822 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 445 | 457 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lcy1g0195 | 822 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 421 | 434 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lcy1g0195 | 822 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 472 | 480 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lcy1g0195 | 822 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 393 | 407 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lcy1g0195 | 822 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 333 | 348 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lcy1g0195 | 822 | FunFam | DNA helicase | 138 | 192 | - | - | |
| Lcy1g0195 | 822 | Pfam | MCM P-loop domain | 280 | 502 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lcy1g0195 | 822 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 184 | 198 | IPR008046 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Lcy1g0195 | 822 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 210 | 222 | IPR008046 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Lcy1g0195 | 822 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 461 | 471 | IPR008046 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Lcy1g0195 | 822 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 494 | 504 | IPR008046 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Lcy1g0195 | 822 | Gene3D | - | 112 | 242 | IPR012340 | - | |
| Lcy1g0195 | 822 | ProSitePatterns | MCM family signature. | 401 | 409 | IPR018525 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro) | |
| Lcy1g0195 | 822 | MobiDBLite | consensus disorder prediction | 696 | 751 | - | - | |
| Lcy1g0195 | 822 | SMART | AAA_5 | 334 | 487 | IPR003593 | GO:0016887(InterPro) | |
| Lcy1g0195 | 822 | Pfam | MCM AAA-lid domain | 619 | 685 | IPR041562 | - | |
| Lcy1g0195 | 822 | MobiDBLite | consensus disorder prediction | 696 | 742 | - | - | |
| Lcy1g0195 | 822 | Coils | Coil | 690 | 716 | - | - | |
| Lcy1g0195 | 822 | CDD | MCM3 | 295 | 687 | - | - | |
| Lcy1g0195 | 822 | Pfam | MCM N-terminal domain | 12 | 101 | IPR027925 | - | |
| Lcy1g0195 | 822 | SUPERFAMILY | Nucleic acid-binding proteins | 15 | 261 | IPR012340 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy1g0195 | Lcy-Chr1:1792784 | Lcy3g1810 | Lcy-Chr3:45311503 | 9.88E-96 | dispersed | |
| Lcy1g0195 | Lcy-Chr1:1792784 | Lcy11g0915 | Lcy-Chr11:27405421 | 4.14E-93 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy1g0195 | K02541 | - | csv:101210889 | 1407.51 |