Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0202 ATGGTTAATATTGTCAGTTTAGCCATTTTCATGATAGCTTGTTTTGTTCCAGTTAGAGTTCTATTTGGCCAAGACCAATCGGCCATGGAAGTTGAACTGGAAGCCTTAAAGGCCTTCAAGAGTTCCATCCATTTGGACTCATTGGGAGCACTTTCAGATTGGACGGATCTCAACCATCACTGCAATTGGTCTGGCATTATCTGTGACTCTGATTCCAAGCGGGTCATTTCGATTACTTTGATTGATCAACAGCTTAAGGGCGAGATTTCTCCATTTATCGGGAACCTCTCAGCTCTCGAGGTTCTTGATTTGACTCAGAATTCATTTACCGGACAGATTCCAGGTGAGTTGGGTTCGTGTTCCAACCTCTCTCAGCTCACTCTATACAGAAATTTTCTTTCAGGTCACATTCCATCCCAGTTGGGAAACCTTGGCCTCCTACAATCAGTTGATTTGGGAGATAACTTTTTAAAAGGAAGCATTCCTGAGAGCATTTGCAACTGCACGAACTTGTTAGCATTTGGCGTGGTATTTAATAATCTCACGGGCAGAATCCCATCCAACATAGGAAACTTGCTCAATCTTCAAATTCTGGTTGCATACGGCAACAAGCTAGAAGGTTCCATTCCCATCTCGATTGGCAAATTAGACGCACTGCAAGCTCTAGATTTTAGCCAGAACAACTTGTCTGGGAATATACCAGTGGAGATTGGGAATTTGTTGAATTTGGAGTATCTCTTATTATTTGAGAATGCTTTGGTTGGGAAAATTCCTGAGGAGATAGGCAAATGTGAGAAGCTTCTTGCTCTAGAACTATACAAAAATAAGTTCAGTGGTCCAATTCCTTCACAGCTAGGGTCTCTGGTTCACTTACAAACCTTGCGTCTGTATACAAATAGGTTAAATTCCACTATACCACAATCTCTCTTACATTTGAAAGGTTTAACCCATTTGCTTCTCTCAGAGAATGAGTTAAGTGGAACTATATCTTCTGATATTGGATCTTTGAGATTGTTGCAGGTTTTGACTCTTCACTCGAATAGATTCTCTGGGGTGATTCCTTCATCTTTGACAAACTTGTCAAACCTGACACATTTGTCTCTGAGCTTCAATTTATTCACAGGAGAGATTCCATCCAATATAGGTTTGCTTAATAATTTGAAGAGATTGACTTTGAGCGGCAATCTCCTAGCGGGTTCAATTCCATCTAGTATTACCAACTGCACCCAGCTTTCTATCATTGATCTTTCATTTAATAGGCTGACAGGGAAAATACCTCTAGGATTTGGGAAGTTGCGGAATCTTACTTCCCTCTTCCTTGGATCAAATAGGATTTTTGGTGAAATCCCAGATGACTTCTTTAATTGCTCATCTCTTGATCTTGTAGACCTGTCTCTAAACAATTTCACTGGATTGTTAAAACCCAGTATTAGCAAGCTTTCCAATATCCAGGTTTTCAGAGCCTCATCAAATTCATTTTCTGGGGAAATTCCAAGGGACATTGGCAACTTAAGTAGACTCAACACATTAATACTTTCAGGAAATAAATTTTCAGGTCAAATTCCTGGGGAGTTGTCTAACCTGTCTCTTCTTCAAGCTCTTTCTTTGCACGACAATGCATTGGAAGGAAGGATTCCAGAAAAAATATTTGATCTGAAACAACTGGATCATCTTCATTTGCAGAACAACAAGTTCACAGGTCCAATTCCAGATGCCATCTCAAAACTTGAGTTTCTTTCATATTTGGATCTCCATGGTAACATGCTTAATGGATCCATCCCTAAAAGTATGAGGAACCTTCATCGACTTGTGATGTTAGATCTGTCCCACAACCATCTATCTGGATCAATTCCTGGGGTTTTAATCTCAGGTATGAAAAATATGCAGCTATACATGAACTTGTCATACAATTTCCTGGCAGGAGGTATTCCAACTGAGCTTGGGTTGTTGCAAATGTTACAATCTATTGACTTCTCAAACAACAATCTCACTGGGATTATTCCAGCAACAATTGGAGGTTGTAGAAATTTGTTCTTTCTTGATCTGTCAGGAAATGGTCTTTCTGGTATGCTTCCAGGTAAAGCTTTTACTGGAATGAATATGCTCTCAAACTTGAGCCTTTCACGGAACAAAATATCTGGTGAAATCCCAGAAGAGTTGGCAAATCTGGAGCATTTGTACTCTTTGGACCTTTCTCAGAATCATTTCAATGGAAGCATCCCTCAGAACATTGCAAGACTTTCTTCTCTGAAGTATGTCAACCTTTCCTTCAATCAACTAGAAGGTCCTGTTCCTGACACCGGAATATTTCAAAAAATAAATGTGTCAAGCTTGATAGGAAATCCTGCTCTTTGTGGATACAAGTTCTTTGCTCCTTGTGAAAAGAAGGATTCAAGACATCTATCAAAAAAAGCCTTACTAATTCTCATAATCCTTGGATCTGTTATTGTACTTTTAGCTATAATTTTCTTAATTCTAGGCCTAGATCGATATTGTAAGCTTGAGAGATCTAAAAGTATTGAGAATCCTGAACCATCATTGGATTATGCATGTACCCTTAAGAGGTTTGATAAGAAGGACATAGAGATTGCAACAGAATACTTCAGCGAAAACAACATTCTAGGTTCCAGTATTTTAAGCACTGTCTACAGGGGTCAACTGGAAAATGGACAGATTGTAGCTGTAAAAAAATTGAATTTGCAATATTTCTCTACAGAATCAGATGATTACTTCAGTAGAGAAATCAAGATTCTTAGTCAACTTAGACACAGGAATTTGGTGAAAGTACTCGGATATGCTTGGGAAAGCCAGAAACTGAAGGCTATCGTTCTTGGATATATGGAAAATGGGAACTTGGATAGAATAATACATAACCATGGAACAGATCAAATAAGTTGGACGTTGTCAAAGAGAGTTGAAATTTGTGTTTCTGTTGCTACTGGGATGCAATACCTGCATCATGGATATGATTTTCCCATCATTCACTGTGACTTGAAGCCTTCAAACATCCTTCTGGATGGAGACTGGGTAGCCCATGTGAGCGATTTTGGAACTGCTAGAGTGTTGGGGGTGCAAAGCCAAGACACTAGCAGCGTTTCCTCTTCAGCAGCCTTTGAAGGCACTATCGGATATTTGGCTCCAGAGTTTGCCTACATGGGGAAAGTGACAACAAAAGTAGATGTGTTCAGTTTCGGCATAATACTGATGGAATTTCTGACAAAGAAAAGGCCAACTGCAACCATTGAAGCTCATGGACTCCCAATCAGCTTGCAGCAACTGGTAGAAAGAGCTCTAGCAATTGGAACGGAAGGGCTTATTCAAGTTTTGGACCCTGTGCTGCTCTTGAATGATTCAAAGGAGCATAAGAGGTTAGAAGAACTACTCAAACTAGCACTAAGCTGTACCGACCAAAATCCCGAACATAGACCTGACATGAATGAAGTTCTGTCTATCCTTCTGAAGCTGCAGAGGGATGAATAG 3480 39.77 MVNIVSLAIFMIACFVPVRVLFGQDQSAMEVELEALKAFKSSIHLDSLGALSDWTDLNHHCNWSGIICDSDSKRVISITLIDQQLKGEISPFIGNLSALEVLDLTQNSFTGQIPGELGSCSNLSQLTLYRNFLSGHIPSQLGNLGLLQSVDLGDNFLKGSIPESICNCTNLLAFGVVFNNLTGRIPSNIGNLLNLQILVAYGNKLEGSIPISIGKLDALQALDFSQNNLSGNIPVEIGNLLNLEYLLLFENALVGKIPEEIGKCEKLLALELYKNKFSGPIPSQLGSLVHLQTLRLYTNRLNSTIPQSLLHLKGLTHLLLSENELSGTISSDIGSLRLLQVLTLHSNRFSGVIPSSLTNLSNLTHLSLSFNLFTGEIPSNIGLLNNLKRLTLSGNLLAGSIPSSITNCTQLSIIDLSFNRLTGKIPLGFGKLRNLTSLFLGSNRIFGEIPDDFFNCSSLDLVDLSLNNFTGLLKPSISKLSNIQVFRASSNSFSGEIPRDIGNLSRLNTLILSGNKFSGQIPGELSNLSLLQALSLHDNALEGRIPEKIFDLKQLDHLHLQNNKFTGPIPDAISKLEFLSYLDLHGNMLNGSIPKSMRNLHRLVMLDLSHNHLSGSIPGVLISGMKNMQLYMNLSYNFLAGGIPTELGLLQMLQSIDFSNNNLTGIIPATIGGCRNLFFLDLSGNGLSGMLPGKAFTGMNMLSNLSLSRNKISGEIPEELANLEHLYSLDLSQNHFNGSIPQNIARLSSLKYVNLSFNQLEGPVPDTGIFQKINVSSLIGNPALCGYKFFAPCEKKDSRHLSKKALLILIILGSVIVLLAIIFLILGLDRYCKLERSKSIENPEPSLDYACTLKRFDKKDIEIATEYFSENNILGSSILSTVYRGQLENGQIVAVKKLNLQYFSTESDDYFSREIKILSQLRHRNLVKVLGYAWESQKLKAIVLGYMENGNLDRIIHNHGTDQISWTLSKRVEICVSVATGMQYLHHGYDFPIIHCDLKPSNILLDGDWVAHVSDFGTARVLGVQSQDTSSVSSSAAFEGTIGYLAPEFAYMGKVTTKVDVFSFGIILMEFLTKKRPTATIEAHGLPISLQQLVERALAIGTEGLIQVLDPVLLLNDSKEHKRLEELLKLALSCTDQNPEHRPDMNEVLSILLKLQRDE 1159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1850000 1854459 + Maker00011968 Lcy1g0202 622114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0202 1159 Gene3D Phosphorylase Kinase; domain 1 832 946 - -
Lcy1g0202 1159 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 423 626 - -
Lcy1g0202 1159 Pfam Leucine rich repeat N-terminal domain 32 69 IPR013210 -
Lcy1g0202 1159 Gene3D Ribonuclease Inhibitor 179 260 IPR032675 -
Lcy1g0202 1159 Gene3D Ribonuclease Inhibitor 522 626 IPR032675 -
Lcy1g0202 1159 SUPERFAMILY Protein kinase-like (PK-like) 844 1153 IPR011009 -
Lcy1g0202 1159 CDD STKc_IRAK 874 1155 - -
Lcy1g0202 1159 Pfam Protein kinase domain 870 1150 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0202 1159 SMART serkin_6 868 1153 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0202 1159 SUPERFAMILY L domain-like 31 312 - -
Lcy1g0202 1159 Gene3D Ribonuclease Inhibitor 698 802 IPR032675 -
Lcy1g0202 1159 ProSiteProfiles Protein kinase domain profile. 868 1159 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0202 1159 Gene3D Ribonuclease Inhibitor 377 428 IPR032675 -
Lcy1g0202 1159 Gene3D Ribonuclease Inhibitor 627 697 IPR032675 -
Lcy1g0202 1159 Pfam Leucine Rich Repeat 219 240 IPR001611 GO:0005515(InterPro)
Lcy1g0202 1159 Pfam Leucine Rich Repeat 147 168 IPR001611 GO:0005515(InterPro)
Lcy1g0202 1159 Pfam Leucine Rich Repeat 99 120 IPR001611 GO:0005515(InterPro)
Lcy1g0202 1159 Pfam Leucine Rich Repeat 507 528 IPR001611 GO:0005515(InterPro)
Lcy1g0202 1159 Pfam Leucine Rich Repeat 362 382 IPR001611 GO:0005515(InterPro)
Lcy1g0202 1159 Pfam Leucine Rich Repeat 339 360 IPR001611 GO:0005515(InterPro)
Lcy1g0202 1159 Pfam Leucine Rich Repeat 315 336 IPR001611 GO:0005515(InterPro)
Lcy1g0202 1159 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 829 946 - -
Lcy1g0202 1159 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 330 422 - -
Lcy1g0202 1159 Gene3D Ribonuclease Inhibitor 269 376 IPR032675 -
Lcy1g0202 1159 Pfam Leucine rich repeat 386 445 IPR001611 GO:0005515(InterPro)
Lcy1g0202 1159 Pfam Leucine rich repeat 691 736 IPR001611 GO:0005515(InterPro)
Lcy1g0202 1159 Pfam Leucine rich repeat 633 687 IPR001611 GO:0005515(InterPro)
Lcy1g0202 1159 Pfam Leucine rich repeat 554 613 IPR001611 GO:0005515(InterPro)
Lcy1g0202 1159 Gene3D Transferase(Phosphotransferase) domain 1 947 1159 - -
Lcy1g0202 1159 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 627 797 - -
Lcy1g0202 1159 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 947 1159 - -
Lcy1g0202 1159 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 184 283 - -
Lcy1g0202 1159 SUPERFAMILY RNI-like 449 762 - -
Lcy1g0202 1159 PANTHER OS04G0122200 PROTEIN 46 159 IPR051809 -
Lcy1g0202 1159 SMART LRR_typ_2 600 624 IPR003591 -
Lcy1g0202 1159 SMART LRR_typ_2 336 359 IPR003591 -
Lcy1g0202 1159 SMART LRR_typ_2 674 698 IPR003591 -
Lcy1g0202 1159 SMART LRR_typ_2 747 772 IPR003591 -
Lcy1g0202 1159 SMART LRR_typ_2 96 120 IPR003591 -
Lcy1g0202 1159 SMART LRR_typ_2 360 383 IPR003591 -
Lcy1g0202 1159 SMART LRR_typ_2 384 408 IPR003591 -
Lcy1g0202 1159 SMART LRR_typ_2 528 552 IPR003591 -
Lcy1g0202 1159 SMART LRR_typ_2 144 168 IPR003591 -
Lcy1g0202 1159 SMART LRR_typ_2 216 240 IPR003591 -
Lcy1g0202 1159 SMART LRR_typ_2 576 599 IPR003591 -
Lcy1g0202 1159 SMART LRR_typ_2 650 673 IPR003591 -
Lcy1g0202 1159 SMART LRR_typ_2 288 312 IPR003591 -
Lcy1g0202 1159 SMART LRR_typ_2 723 746 IPR003591 -
Lcy1g0202 1159 SMART LRR_typ_2 432 456 IPR003591 -
Lcy1g0202 1159 ProSitePatterns Serine/Threonine protein kinases active-site signature. 993 1005 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0202 1159 Gene3D Ribonuclease Inhibitor 429 521 IPR032675 -
Lcy1g0202 1159 Gene3D Ribonuclease Inhibitor 28 178 IPR032675 -
Lcy1g0202 1159 SUPERFAMILY L domain-like 258 546 - -
Lcy1g0202 1159 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 29 183 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0202 Lcy-Chr1:1850000 Lcy1g0870 Lcy-Chr1:7482960 1.76E-46 dispersed
Lcy12g0510 Lcy-Chr12:6132999 Lcy1g0202 Lcy-Chr1:1850000 8.03E-37 transposed
Lcy1g0654 Lcy-Chr1:5620948 Lcy1g0202 Lcy-Chr1:1850000 2.33E-08 transposed
Lcy1g0202 Lcy-Chr1:1850000 Lcy8g1625 Lcy-Chr8:42832368 1.54E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65604 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0202 K13420 - csv:101215973 1884.38