Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0204 ATGGCCGCTGCCACAATGGCTCTCTCCTCCCCATCTCTGGCCGGCAAGGCCGTGAAGCTTTCCCCCAACGCCCCTGAGATTCAGGGCAATGGAAGAGTCAGCATGAGGAAGACTGCCAGCAAGCCAGTTTCCTCCGGCAGCCCATGGTACGGCCCCGACCGTGTTAAGTACTTGGGCCCATTCTCCGGCGAGCCACCGTCCTACCTTACCGGAGAGTTCCCCGGTGACTACGGCTGGGACACTGCTGGACTTTCAGCCGATCCCGAGACATTCGCCAAGAACCGTGAGCTGGAAGTGATCCACTCCAGATGGGCCATGCTTGGAGCTTTGGGTTGTGTCTTCCCCGAGCTTCTGTCCCGCAATGGTGTGAAGTTTGGCGAGGCTGTGTGGTTCAAGGCTGGTTCTCAGATCTTCAGCGAGGGAGGCCTCGACTACTTGGGCAACCCGAGCTTGGTCCACGCACAGAGCATTTTGGCCATCTGGGCCTGCCAGGTCGTGTTGATGGGCGCCGTCGAGGGCTACCGTATTGCCGGCGGCCCACTCGGAGAGATCACCGACCCCATCTACCCAGGTGGAAGCTTCGACCCATTGGGTTTGGCTGATGACCCAGAGGCCTTCGCTGAGCTCAAGGTGAAGGAGCTCAAGAATGGAAGGCTGGCCATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGTTACTGGAAAGGGTCCTTTGGAGAACTTGGCTGACCACCTTGCTGACCCAGTCAACAACAATGCATGGGCCTACGCCACAAACTTTGTTCCCGGAAAGTGA 798 58.15 MAAATMALSSPSLAGKAVKLSPNAPEIQGNGRVSMRKTASKPVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1857306 1858313 + Maker00011659 Lcy1g0204 622116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0204 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Lcy1g0204 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
Lcy1g0204 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 4 265 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Lcy1g0204 265 FunFam Chlorophyll a-b binding protein, chloroplastic 56 258 - -
Lcy1g0204 265 MobiDBLite consensus disorder prediction 19 46 - -
Lcy1g0204 265 Pfam Chlorophyll A-B binding protein 65 232 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0389 Lcy-Chr12:4730039 Lcy1g0204 Lcy-Chr1:1857306 1.45E-170 dispersed
Lcy1g0204 Lcy-Chr1:1857306 Lcy5g1744 Lcy-Chr5:40062234 1.65E-190 dispersed
Lcy1g0203 Lcy-Chr1:1854990 Lcy1g0204 Lcy-Chr1:1857306 7.62E-196 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0204 K08912 - csv:101221671 531.176