Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy1g0204 | ATGGCCGCTGCCACAATGGCTCTCTCCTCCCCATCTCTGGCCGGCAAGGCCGTGAAGCTTTCCCCCAACGCCCCTGAGATTCAGGGCAATGGAAGAGTCAGCATGAGGAAGACTGCCAGCAAGCCAGTTTCCTCCGGCAGCCCATGGTACGGCCCCGACCGTGTTAAGTACTTGGGCCCATTCTCCGGCGAGCCACCGTCCTACCTTACCGGAGAGTTCCCCGGTGACTACGGCTGGGACACTGCTGGACTTTCAGCCGATCCCGAGACATTCGCCAAGAACCGTGAGCTGGAAGTGATCCACTCCAGATGGGCCATGCTTGGAGCTTTGGGTTGTGTCTTCCCCGAGCTTCTGTCCCGCAATGGTGTGAAGTTTGGCGAGGCTGTGTGGTTCAAGGCTGGTTCTCAGATCTTCAGCGAGGGAGGCCTCGACTACTTGGGCAACCCGAGCTTGGTCCACGCACAGAGCATTTTGGCCATCTGGGCCTGCCAGGTCGTGTTGATGGGCGCCGTCGAGGGCTACCGTATTGCCGGCGGCCCACTCGGAGAGATCACCGACCCCATCTACCCAGGTGGAAGCTTCGACCCATTGGGTTTGGCTGATGACCCAGAGGCCTTCGCTGAGCTCAAGGTGAAGGAGCTCAAGAATGGAAGGCTGGCCATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGTTACTGGAAAGGGTCCTTTGGAGAACTTGGCTGACCACCTTGCTGACCCAGTCAACAACAATGCATGGGCCTACGCCACAAACTTTGTTCCCGGAAAGTGA | 798 | 58.15 | MAAATMALSSPSLAGKAVKLSPNAPEIQGNGRVSMRKTASKPVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK | 265 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 1857306 | 1858313 | + | Maker00011659 | Lcy1g0204 | 622116 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy1g0204 | 265 | Gene3D | Chlorophyll a/b binding protein domain | 56 | 258 | - | - | |
Lcy1g0204 | 265 | SUPERFAMILY | Chlorophyll a-b binding protein | 48 | 262 | - | - | |
Lcy1g0204 | 265 | PANTHER | CHLOROPHYLL A/B BINDING PROTEIN | 4 | 265 | IPR001344 | GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro) | |
Lcy1g0204 | 265 | FunFam | Chlorophyll a-b binding protein, chloroplastic | 56 | 258 | - | - | |
Lcy1g0204 | 265 | MobiDBLite | consensus disorder prediction | 19 | 46 | - | - | |
Lcy1g0204 | 265 | Pfam | Chlorophyll A-B binding protein | 65 | 232 | IPR022796 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy12g0389 | Lcy-Chr12:4730039 | Lcy1g0204 | Lcy-Chr1:1857306 | 1.45E-170 | dispersed | |
Lcy1g0204 | Lcy-Chr1:1857306 | Lcy5g1744 | Lcy-Chr5:40062234 | 1.65E-190 | dispersed | |
Lcy1g0203 | Lcy-Chr1:1854990 | Lcy1g0204 | Lcy-Chr1:1857306 | 7.62E-196 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy1g0204 | K08912 | - | csv:101221671 | 531.176 |