Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0207 ATGTCAGATGAAATGTTTAGAGACGTTTTTTTCTCGGACAGTTTCCGAGATGGTTGGTTGGGTGATTTAGAATCAGGCATGGATGAATACGACGAGTCTCTGGCGAGAGCTTTTGGCGTGTCGGGTTCTTCGAATAATAATGAAATTTCGGGGACTCCGATGAATTCTTGTGGTTCGTTATCGTCTTCTGATGCTGGAGCTGAGGAGGATGATTCTGGAAAGGAAAAGGATAAACAGATCAAAGAGATGGACGATGATTCTGGACAGACTTCTAAGCCTGCGGCGAAATCGAAGAAGAAAGGAGAGAAGAAAGAGAGAGAGCCGAGATTTGCTTTCATGACGAAGAGCGAGGTTGATCATCTTGAAGATGGATATAGATGGAGAAAATATGGACAGAAGGCTGTCAAGAATAGTGCCTTTCCCAGAAGCTACTATAGATGCACAACTCAGAAATGTGGAGTGAAGAAACGGGTAGAGAGATCGTTCGAAGATCCGTCCATTGTGATTACGACTTACGAAGGTCAACACAACCACCCAATCCCAGCCACACTGAGAGGAAATCTGTCGGCCGCCGCCGCGTTTCCACCGTCCATGCTGGCACCAATGCCAGTGGTCGGTGGTGGCGCCGCGTTCCTCCCAGAACTCTTGACCAATACTTCCGGCAACAACCAGGCCGTCGGCGGCTCCGTTTATTCACAGAGCAGCTTCGGCTATCCTTACAACGGGCGGCAGCCGGAATATGGGCTTCTGCAGGACATTTTTCCAGCTCCGTCGTCGTTCTACAACCGGCAGCCGTGA 798 49.37 MSDEMFRDVFFSDSFRDGWLGDLESGMDEYDESLARAFGVSGSSNNNEISGTPMNSCGSLSSSDAGAEEDDSGKEKDKQIKEMDDDSGQTSKPAAKSKKKGEKKEREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSAFPRSYYRCTTQKCGVKKRVERSFEDPSIVITTYEGQHNHPIPATLRGNLSAAAAFPPSMLAPMPVVGGGAAFLPELLTNTSGNNQAVGGSVYSQSSFGYPYNGRQPEYGLLQDIFPAPSSFYNRQP 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1887395 1889639 - Maker00011921 Lcy1g0207 622119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0207 265 SMART WRKY_cls 121 180 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy1g0207 265 FunFam WRKY transcription factor 57 107 181 - -
Lcy1g0207 265 Pfam WRKY DNA -binding domain 122 179 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy1g0207 265 MobiDBLite consensus disorder prediction 67 109 - -
Lcy1g0207 265 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 69 187 IPR044810 GO:0003700(InterPro)
Lcy1g0207 265 SUPERFAMILY WRKY DNA-binding domain 113 181 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy1g0207 265 MobiDBLite consensus disorder prediction 39 109 - -
Lcy1g0207 265 Gene3D WRKY domain 106 182 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy1g0207 265 MobiDBLite consensus disorder prediction 39 66 - -
Lcy1g0207 265 ProSiteProfiles WRKY domain profile. 116 181 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1663 Lcy-Chr13:35563246 Lcy1g0207 Lcy-Chr1:1887395 1.57E-44 dispersed
Lcy1g0207 Lcy-Chr1:1887395 Lcy4g0775 Lcy-Chr4:9260395 2.43E-46 dispersed
Lcy1g0207 Lcy-Chr1:1887395 Lcy8g1624 Lcy-Chr8:42827965 2.14E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19490 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0207 - - - 0.0