Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy1g0207 | ATGTCAGATGAAATGTTTAGAGACGTTTTTTTCTCGGACAGTTTCCGAGATGGTTGGTTGGGTGATTTAGAATCAGGCATGGATGAATACGACGAGTCTCTGGCGAGAGCTTTTGGCGTGTCGGGTTCTTCGAATAATAATGAAATTTCGGGGACTCCGATGAATTCTTGTGGTTCGTTATCGTCTTCTGATGCTGGAGCTGAGGAGGATGATTCTGGAAAGGAAAAGGATAAACAGATCAAAGAGATGGACGATGATTCTGGACAGACTTCTAAGCCTGCGGCGAAATCGAAGAAGAAAGGAGAGAAGAAAGAGAGAGAGCCGAGATTTGCTTTCATGACGAAGAGCGAGGTTGATCATCTTGAAGATGGATATAGATGGAGAAAATATGGACAGAAGGCTGTCAAGAATAGTGCCTTTCCCAGAAGCTACTATAGATGCACAACTCAGAAATGTGGAGTGAAGAAACGGGTAGAGAGATCGTTCGAAGATCCGTCCATTGTGATTACGACTTACGAAGGTCAACACAACCACCCAATCCCAGCCACACTGAGAGGAAATCTGTCGGCCGCCGCCGCGTTTCCACCGTCCATGCTGGCACCAATGCCAGTGGTCGGTGGTGGCGCCGCGTTCCTCCCAGAACTCTTGACCAATACTTCCGGCAACAACCAGGCCGTCGGCGGCTCCGTTTATTCACAGAGCAGCTTCGGCTATCCTTACAACGGGCGGCAGCCGGAATATGGGCTTCTGCAGGACATTTTTCCAGCTCCGTCGTCGTTCTACAACCGGCAGCCGTGA | 798 | 49.37 | MSDEMFRDVFFSDSFRDGWLGDLESGMDEYDESLARAFGVSGSSNNNEISGTPMNSCGSLSSSDAGAEEDDSGKEKDKQIKEMDDDSGQTSKPAAKSKKKGEKKEREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSAFPRSYYRCTTQKCGVKKRVERSFEDPSIVITTYEGQHNHPIPATLRGNLSAAAAFPPSMLAPMPVVGGGAAFLPELLTNTSGNNQAVGGSVYSQSSFGYPYNGRQPEYGLLQDIFPAPSSFYNRQP | 265 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 1887395 | 1889639 | - | Maker00011921 | Lcy1g0207 | 622119 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy1g0207 | 265 | SMART | WRKY_cls | 121 | 180 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy1g0207 | 265 | FunFam | WRKY transcription factor 57 | 107 | 181 | - | - | |
Lcy1g0207 | 265 | Pfam | WRKY DNA -binding domain | 122 | 179 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy1g0207 | 265 | MobiDBLite | consensus disorder prediction | 67 | 109 | - | - | |
Lcy1g0207 | 265 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 69 | 187 | IPR044810 | GO:0003700(InterPro) | |
Lcy1g0207 | 265 | SUPERFAMILY | WRKY DNA-binding domain | 113 | 181 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy1g0207 | 265 | MobiDBLite | consensus disorder prediction | 39 | 109 | - | - | |
Lcy1g0207 | 265 | Gene3D | WRKY domain | 106 | 182 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy1g0207 | 265 | MobiDBLite | consensus disorder prediction | 39 | 66 | - | - | |
Lcy1g0207 | 265 | ProSiteProfiles | WRKY domain profile. | 116 | 181 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy13g1663 | Lcy-Chr13:35563246 | Lcy1g0207 | Lcy-Chr1:1887395 | 1.57E-44 | dispersed | |
Lcy1g0207 | Lcy-Chr1:1887395 | Lcy4g0775 | Lcy-Chr4:9260395 | 2.43E-46 | dispersed | |
Lcy1g0207 | Lcy-Chr1:1887395 | Lcy8g1624 | Lcy-Chr8:42827965 | 2.14E-37 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19490 | None | None | None | None | Lcy | TF |
Pathway information
