Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0208 ATGGAGAAAGAGCCTCTTCTTCCGTATCTGAGCCCAAGAGGGAAACCGCCTCCTTTACCTCCTCAATTATGTCCGCTCCCTGAAAATGATGAAATTACTCTGCCTATGACGCCCACGGAGTTCAAAGACCGCCTGATCTTTGGCCCTTCATCGTCCCCTCAAGATGGGTCTCCTGCGTTCGACGCTTTGACGCTATCTCTTTCGTCATCGAGACCCTCTGCTTCTTCTTCTCTTCAGGACCCATCAACCCCTTTGGACCCGAAATCCCAATCGCAGTCTCAACAGGGGTGGCCTGTGGATTCCAATTACTCATGGCACAAAAGCAACCTCCATCGCTCCAAAACTGCACCTGCCATGGCGGTCATCAACGATGTCAACCATTCGCAGGAGCCCAAGCCACAATTTGGTAAACAATCTATAATCCGCCAAGCTGTTGTTCTTCTAATTATTTACTTATCGTTGGGCGTGCTTATCTATTGGATTAATCGTGATAAGTTTTCGGCTACCGAGACTCATCCTGTGGTCGATGCATTGTACTTTTGTATTGTAACGATGTGCACGATTGGGTATGGAGATATTACGCCAAATAGTGCGGCGACGAAGCTATTCTCAGTATTTTTTGTGTTGGTGGGCTTTGGGTTCATTGATATATTGCTCTCTGGAATGGTCAGTTATGTGCTTGATTTGCAGGAGAGTTATTTGTTGAGGAATGTAAAAAGGGGGGTGCAGCAGGAGTCTAGGAAATCCTATATAATTGATGTGAAGAAGGGAAGAATGAGGATTAGAATGAAAGTGGCATTGGCCTTGGGCGTTGTGATACTTTGTATAGGAATTGGCATGGGTGTTATGCATTTTGTTGAGAACCTGGGGTGGTTGGATTCATTTTATCTTTCAGTCATGTCTGTGACAACGGTTGGATATGGTGATCAGGCATTCAAGTCGATGACTGGTCGTATTTTTGCTTCAATCTGGTTGCTTGTATCGACCCTTGCTGTTGCTCGGGCGTTTCTTTATTTAGCAGAGGCAAGAGTAGATAAGCGCCATAGGATGATGGCAAAATGGATACTTGGTCAGGATATGACTGTCTCTGAGTTTCTTGCAGCTGATATTGACAACAATGGCTTTGTGAGGGTGCATTCAAAGACTATGGATTTCACAGAGGAAAGTGTTGGGATACCAGTAGGTGCAGAAGTCTTACAGTTGGACGAAATC 1212 45.38 MEKEPLLPYLSPRGKPPPLPPQLCPLPENDEITLPMTPTEFKDRLIFGPSSSPQDGSPAFDALTLSLSSSRPSASSSLQDPSTPLDPKSQSQSQQGWPVDSNYSWHKSNLHRSKTAPAMAVINDVNHSQEPKPQFGKQSIIRQAVVLLIIYLSLGVLIYWINRDKFSATETHPVVDALYFCIVTMCTIGYGDITPNSAATKLFSVFFVLVGFGFIDILLSGMVSYVLDLQESYLLRNVKRGVQQESRKSYIIDVKKGRMRIRMKVALALGVVILCIGIGMGVMHFVENLGWLDSFYLSVMSVTTVGYGDQAFKSMTGRIFASIWLLVSTLAVARAFLYLAEARVDKRHRMMAKWILGQDMTVSEFLAADIDNNGFVRVHSKTMDFTEESVGIPVGAEVLQLDEI 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1903952 1907079 - Maker00012030 Lcy1g0208 622120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0208 404 Gene3D - 137 234 - -
Lcy1g0208 404 Pfam Ion channel 272 341 IPR013099 -
Lcy1g0208 404 Pfam Ion channel 147 226 IPR013099 -
Lcy1g0208 404 SUPERFAMILY Voltage-gated potassium channels 254 359 - -
Lcy1g0208 404 FunFam Two-pore potassium channel 3 248 362 - -
Lcy1g0208 404 Gene3D - 235 364 - -
Lcy1g0208 404 MobiDBLite consensus disorder prediction 10 25 - -
Lcy1g0208 404 MobiDBLite consensus disorder prediction 1 98 - -
Lcy1g0208 404 MobiDBLite consensus disorder prediction 50 98 - -
Lcy1g0208 404 PRINTS Two pore domain K+ channel signature 303 312 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Lcy1g0208 404 PRINTS Two pore domain K+ channel signature 183 211 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Lcy1g0208 404 SUPERFAMILY Voltage-gated potassium channels 140 226 - -
Lcy1g0208 404 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 145 354 IPR003280 GO:0005267(InterPro)|GO:0005887(PANTHER)|GO:0009705(PANTHER)|GO:0015271(PANTHER)|GO:0016020(InterPro)|GO:0022841(PANTHER)|GO:0030322(PANTHER)|GO:0071805(InterPro)|GO:0071805(PANTHER)
Lcy1g0208 404 FunFam Two-pore potassium channel 5 129 239 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0208 Lcy-Chr1:1903952 Lcy9g1112 Lcy-Chr9:35050265 7.84E-46 dispersed
Lcy1g0208 Lcy-Chr1:1903952 Lcy5g1368 Lcy-Chr5:32561668 1.87E-42 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0208 K05389 - csv:101220017 665.611