Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy1g0208 | ATGGAGAAAGAGCCTCTTCTTCCGTATCTGAGCCCAAGAGGGAAACCGCCTCCTTTACCTCCTCAATTATGTCCGCTCCCTGAAAATGATGAAATTACTCTGCCTATGACGCCCACGGAGTTCAAAGACCGCCTGATCTTTGGCCCTTCATCGTCCCCTCAAGATGGGTCTCCTGCGTTCGACGCTTTGACGCTATCTCTTTCGTCATCGAGACCCTCTGCTTCTTCTTCTCTTCAGGACCCATCAACCCCTTTGGACCCGAAATCCCAATCGCAGTCTCAACAGGGGTGGCCTGTGGATTCCAATTACTCATGGCACAAAAGCAACCTCCATCGCTCCAAAACTGCACCTGCCATGGCGGTCATCAACGATGTCAACCATTCGCAGGAGCCCAAGCCACAATTTGGTAAACAATCTATAATCCGCCAAGCTGTTGTTCTTCTAATTATTTACTTATCGTTGGGCGTGCTTATCTATTGGATTAATCGTGATAAGTTTTCGGCTACCGAGACTCATCCTGTGGTCGATGCATTGTACTTTTGTATTGTAACGATGTGCACGATTGGGTATGGAGATATTACGCCAAATAGTGCGGCGACGAAGCTATTCTCAGTATTTTTTGTGTTGGTGGGCTTTGGGTTCATTGATATATTGCTCTCTGGAATGGTCAGTTATGTGCTTGATTTGCAGGAGAGTTATTTGTTGAGGAATGTAAAAAGGGGGGTGCAGCAGGAGTCTAGGAAATCCTATATAATTGATGTGAAGAAGGGAAGAATGAGGATTAGAATGAAAGTGGCATTGGCCTTGGGCGTTGTGATACTTTGTATAGGAATTGGCATGGGTGTTATGCATTTTGTTGAGAACCTGGGGTGGTTGGATTCATTTTATCTTTCAGTCATGTCTGTGACAACGGTTGGATATGGTGATCAGGCATTCAAGTCGATGACTGGTCGTATTTTTGCTTCAATCTGGTTGCTTGTATCGACCCTTGCTGTTGCTCGGGCGTTTCTTTATTTAGCAGAGGCAAGAGTAGATAAGCGCCATAGGATGATGGCAAAATGGATACTTGGTCAGGATATGACTGTCTCTGAGTTTCTTGCAGCTGATATTGACAACAATGGCTTTGTGAGGGTGCATTCAAAGACTATGGATTTCACAGAGGAAAGTGTTGGGATACCAGTAGGTGCAGAAGTCTTACAGTTGGACGAAATC | 1212 | 45.38 | MEKEPLLPYLSPRGKPPPLPPQLCPLPENDEITLPMTPTEFKDRLIFGPSSSPQDGSPAFDALTLSLSSSRPSASSSLQDPSTPLDPKSQSQSQQGWPVDSNYSWHKSNLHRSKTAPAMAVINDVNHSQEPKPQFGKQSIIRQAVVLLIIYLSLGVLIYWINRDKFSATETHPVVDALYFCIVTMCTIGYGDITPNSAATKLFSVFFVLVGFGFIDILLSGMVSYVLDLQESYLLRNVKRGVQQESRKSYIIDVKKGRMRIRMKVALALGVVILCIGIGMGVMHFVENLGWLDSFYLSVMSVTTVGYGDQAFKSMTGRIFASIWLLVSTLAVARAFLYLAEARVDKRHRMMAKWILGQDMTVSEFLAADIDNNGFVRVHSKTMDFTEESVGIPVGAEVLQLDEI | 404 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 1903952 | 1907079 | - | Maker00012030 | Lcy1g0208 | 622120 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy1g0208 | 404 | Gene3D | - | 137 | 234 | - | - | |
Lcy1g0208 | 404 | Pfam | Ion channel | 272 | 341 | IPR013099 | - | |
Lcy1g0208 | 404 | Pfam | Ion channel | 147 | 226 | IPR013099 | - | |
Lcy1g0208 | 404 | SUPERFAMILY | Voltage-gated potassium channels | 254 | 359 | - | - | |
Lcy1g0208 | 404 | FunFam | Two-pore potassium channel 3 | 248 | 362 | - | - | |
Lcy1g0208 | 404 | Gene3D | - | 235 | 364 | - | - | |
Lcy1g0208 | 404 | MobiDBLite | consensus disorder prediction | 10 | 25 | - | - | |
Lcy1g0208 | 404 | MobiDBLite | consensus disorder prediction | 1 | 98 | - | - | |
Lcy1g0208 | 404 | MobiDBLite | consensus disorder prediction | 50 | 98 | - | - | |
Lcy1g0208 | 404 | PRINTS | Two pore domain K+ channel signature | 303 | 312 | IPR003280 | GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro) | |
Lcy1g0208 | 404 | PRINTS | Two pore domain K+ channel signature | 183 | 211 | IPR003280 | GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro) | |
Lcy1g0208 | 404 | SUPERFAMILY | Voltage-gated potassium channels | 140 | 226 | - | - | |
Lcy1g0208 | 404 | PANTHER | POTASSIUM CHANNEL, SUBFAMILY K | 145 | 354 | IPR003280 | GO:0005267(InterPro)|GO:0005887(PANTHER)|GO:0009705(PANTHER)|GO:0015271(PANTHER)|GO:0016020(InterPro)|GO:0022841(PANTHER)|GO:0030322(PANTHER)|GO:0071805(InterPro)|GO:0071805(PANTHER) | |
Lcy1g0208 | 404 | FunFam | Two-pore potassium channel 5 | 129 | 239 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy1g0208 | Lcy-Chr1:1903952 | Lcy9g1112 | Lcy-Chr9:35050265 | 7.84E-46 | dispersed | |
Lcy1g0208 | Lcy-Chr1:1903952 | Lcy5g1368 | Lcy-Chr5:32561668 | 1.87E-42 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy1g0208 | K05389 | - | csv:101220017 | 665.611 |