Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0239 ATGTCAGACTCACCTCAGAGGAAGATGGGAAGAGGAAAGATTGAGATTAAGAGGATCGAAAATACAACAAATCGTCAAGTCACTTTCTGCAAGAGACGAAATGGGCTGCTCAAAAAGGCCTATGAACTTTCTGTTCTGTGTGATGCTGAAGTTGCTCTCATCGTTTTCTCAAGCCGTGGCCGTCTCTATGAGTATGCTAACAACAGTGTGAAGGCAACGATTGATAGATATAAGAAGGCATCCTCAGATTCCTCCAACACTGGATCTACTTCTGAAGCTAACACTCAGTTTTACCAGCAAGAAGCTGCCAAACTCCGAGTTCAGATTGGTAACTTGCAGAACTCAAACAGGAACATGCTGGGTGAGTCTCTAAGTTCTTTGAGTGTAAAAGATCTGAGAAGCCTGGAGGGCAAACTTGAGAAAGGAATTAGCAGAATTAGGTCCAAAAAGAATGAACTCCTCTTTGCTGAGATTGAGTATATGCGGAAAAGGGGTTTCATTGATTTTCCTCTAAATCGAAATCGATTTGCACAACAACAATCAGCTGCTTCGAGCAAAGGTCCCTCTCTTTCTCTCTTTCAATCTCTCTGTCGTTATGAGCAATTAGTATTGAAATTAAAGAAGAAGTTGATACAGATAGCTGAGAGTGAAAGAAATGCCAACATGATGGGAGGAGAATTTGAGCTGATGCAATCTCATCCGTACGATCCAAGAGACTTCTTCCAAGTGAACGGCTTACAACATAATCAACAGTATCCACGACAAGACAACATGGCTCTTCAATTAGTATAA 792 41.41 MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIDRYKKASSDSSNTGSTSEANTQFYQQEAAKLRVQIGNLQNSNRNMLGESLSSLSVKDLRSLEGKLEKGISRIRSKKNELLFAEIEYMRKRGFIDFPLNRNRFAQQQSAASSKGPSLSLFQSLCRYEQLVLKLKKKLIQIAESERNANMMGGEFELMQSHPYDPRDFFQVNGLQHNQQYPRQDNMALQLV 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2165279 2171872 - Maker00011840 Lcy1g0239 622151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0239 263 Coils Coil 199 219 - -
Lcy1g0239 263 FunFam agamous-like MADS-box protein AGL11 21 104 - -
Lcy1g0239 263 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy1g0239 263 PANTHER SERUM RESPONSE FACTOR HOMOLOG 9 230 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lcy1g0239 263 ProSiteProfiles K-box domain profile. 95 187 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lcy1g0239 263 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy1g0239 263 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy1g0239 263 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy1g0239 263 SUPERFAMILY SRF-like 10 84 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy1g0239 263 Gene3D - 21 103 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy1g0239 263 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy1g0239 263 CDD MADS_MEF2_like 10 86 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Lcy1g0239 263 ProSitePatterns MADS-box domain signature. 11 65 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy1g0239 263 SMART madsneu2 9 68 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy1g0239 263 Pfam K-box region 91 164 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0239 Lcy-Chr1:2165279 Lcy6g0403 Lcy-Chr6:3814021 2.73E-44 dispersed
Lcy5g2110 Lcy-Chr5:44175326 Lcy1g0239 Lcy-Chr1:2165279 8.80E-39 transposed
Lcy9g2236 Lcy-Chr9:46915463 Lcy1g0239 Lcy-Chr1:2165279 6.59E-28 transposed
Lcy1g0239 Lcy-Chr1:2165279 Lcy5g1795 Lcy-Chr5:40680779 1.44E-80 wgd
Lcy1g0239 Lcy-Chr1:2165279 Lcy8g1617 Lcy-Chr8:42750420 5.89E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19491 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0239 K09264 - csv:101221430 382.489