Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy1g0240 | ATGCACGCGCTTCAGATTCAGACAAACTACTCAAACTTGCATTTCATTCTTCTGGTTTTGATCCTTATATTCCCCGTCATATTTGAGGCAATGAAGAGTCCAGTGAGGTTTAAGTTGGGGAAACAGTCGTCCCTGGCGCCAGATGGGCATCTCGATTTATTGGAGGAGCTAGTCAACGAGCACGAAACTGAGGTAGAGATAGATCCGAGGGTGAGGTTGATGTATTTGGCCAATGAAGGTGATTTGGAAGGGATTAATGAACTGTTGGATTCGGGAGTCGATGTCAATTTCCATGATATCGATAATCGGACGGCTCTGCATATTGCTGCTTGCCAGGGATTCGCCGACGTTGTCGCTTTGTTGCTCGAACGTGGCGCTGTAGTTGACTCCAGTGATCGCTGGGGAAGTACGCCTCTTAGGGATGCTGTACATTACAAAAACCACGATGTGATCAAACTTTTGGAGAAGCATGGTGCAAAGCCTCTGGTGGCCCCCATGCTCGTCAAGAATGCCCGTGAAGTGCCAGATTATGAAATTGATCCTAAGGAACTTGATTTTACCAACAGTGTGAACATTACCAAGATATTTCATATTGGAAAGAAACACCTCCAGGGAACATTCCGCGTTGCATCTTGGCGTGGAACTGAGGTTGCTGTGAAAGTGGTTGGAGAAGATCTATTCACCGACGAGGATAAAGTGAGAGCATTCAGAGATGAGCTTGCATTGCTTCAGAAAATACGACACCCTAATGTTGTCCAGTTTCTAGGGGCCGTTACTCAAAGTTGCCCGATGATGATCATTACAGAATATTTGCCAAAGGGAGATCTTGGAGCATTATTGAGTAGACAAAGATCAATGAAAACAATGACTGTTCTGAGACTTGCCCTTGATATTGCAAGGGGGATGAATTATTTGCACGAGAACAAGCCAGCACCAATTATTCATCGTGATCTTGAGCCTTCAAATATTCTGAGGGATGATTCTGGCCACCTGAAAGTAGCAGACTTTGGAGTTAGCAAGTTATTGACAGTTAAAGAAGATAAACCTTCGACTTCTTCAGATACTACTCGAAGGTATGAGGCTCCGGAGGTTTTGAAAAATAAAGAATATGATACGAAGGCAGACGTATTTTCATTTGCTTTGATTCTACAAGAGATGATTGAAGCCTGTCCTCCATTTCCTGATGAGCCAGATAGCGTAGTTCCTAAATTGTATGCGACAGGAGAACGTCCCCCATTTACAGTACCACTTAGACGTTATGCAAATGGACTAAAAAAGCTAATTGAAGAATGCTGGAACGAGAATCCAACAAAGAGGCCAACTTTTAGGCAGATAATAACCCAGCTGGAATTCATTTACAACAGATTTGGTCATAAGAGGCGCTGGAAGGTATCTCATTGCCTCTCTGCTTTTGCTTGCCTCCCCATCCCTAGAATTGTTATAGTGCATAATCTTTTTGAAGATGATGTAGACGGATAA | 1479 | 43.48 | MHALQIQTNYSNLHFILLVLILIFPVIFEAMKSPVRFKLGKQSSLAPDGHLDLLEELVNEHETEVEIDPRVRLMYLANEGDLEGINELLDSGVDVNFHDIDNRTALHIAACQGFADVVALLLERGAVVDSSDRWGSTPLRDAVHYKNHDVIKLLEKHGAKPLVAPMLVKNAREVPDYEIDPKELDFTNSVNITKIFHIGKKHLQGTFRVASWRGTEVAVKVVGEDLFTDEDKVRAFRDELALLQKIRHPNVVQFLGAVTQSCPMMIITEYLPKGDLGALLSRQRSMKTMTVLRLALDIARGMNYLHENKPAPIIHRDLEPSNILRDDSGHLKVADFGVSKLLTVKEDKPSTSSDTTRRYEAPEVLKNKEYDTKADVFSFALILQEMIEACPPFPDEPDSVVPKLYATGERPPFTVPLRRYANGLKKLIEECWNENPTKRPTFRQIITQLEFIYNRFGHKRRWKVSHCLSAFACLPIPRIVIVHNLFEDDVDG | 492 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 2179730 | 2185049 | - | Maker00011658 | Lcy1g0240 | 622152 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy1g0240 | 492 | SUPERFAMILY | Ankyrin repeat | 49 | 162 | IPR036770 | - | |
Lcy1g0240 | 492 | Pfam | Protein tyrosine and serine/threonine kinase | 211 | 449 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy1g0240 | 492 | PIRSF | ILK | 14 | 471 | - | - | |
Lcy1g0240 | 492 | ProSiteProfiles | Protein kinase domain profile. | 192 | 452 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy1g0240 | 492 | FunFam | Integrin-linked protein kinase family | 53 | 177 | - | - | |
Lcy1g0240 | 492 | SMART | ANK_2a | 101 | 130 | IPR002110 | GO:0005515(InterPro) | |
Lcy1g0240 | 492 | SMART | ANK_2a | 68 | 97 | IPR002110 | GO:0005515(InterPro) | |
Lcy1g0240 | 492 | SMART | ANK_2a | 134 | 163 | IPR002110 | GO:0005515(InterPro) | |
Lcy1g0240 | 492 | FunFam | serine/threonine-protein kinase STY46-like | 179 | 272 | - | - | |
Lcy1g0240 | 492 | SUPERFAMILY | Protein kinase-like (PK-like) | 207 | 453 | IPR011009 | - | |
Lcy1g0240 | 492 | Gene3D | Transferase(Phosphotransferase) domain 1 | 272 | 466 | - | - | |
Lcy1g0240 | 492 | ProSiteProfiles | Ankyrin repeat profile. | 101 | 133 | IPR002110 | GO:0005515(InterPro) | |
Lcy1g0240 | 492 | ProSiteProfiles | Ankyrin repeat region circular profile. | 101 | 133 | - | - | |
Lcy1g0240 | 492 | Pfam | Ankyrin repeats (3 copies) | 73 | 161 | IPR002110 | GO:0005515(InterPro) | |
Lcy1g0240 | 492 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 90 | 450 | IPR051681 | GO:0004674(PANTHER) | |
Lcy1g0240 | 492 | Gene3D | Phosphorylase Kinase; domain 1 | 191 | 271 | - | - | |
Lcy1g0240 | 492 | CDD | STKc_MAP3K-like | 210 | 449 | - | - | |
Lcy1g0240 | 492 | Gene3D | - | 44 | 173 | IPR036770 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy1g0240 | Lcy-Chr1:2179730 | Lcy3g0858 | Lcy-Chr3:30969604 | 2.11E-41 | dispersed | |
Lcy4g0300 | Lcy-Chr4:3693348 | Lcy1g0240 | Lcy-Chr1:2179730 | 8.58E-88 | transposed | |
Lcy7g0308 | Lcy-Chr7:2631918 | Lcy1g0240 | Lcy-Chr1:2179730 | 6.75E-76 | transposed | |
Lcy1g0240 | Lcy-Chr1:2179730 | Lcy8g1543 | Lcy-Chr8:42059683 | 1.89E-18 | wgd | |
Lcy1g0240 | Lcy-Chr1:2179730 | Lcy8g1615 | Lcy-Chr8:42719413 | 1.14E-131 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65605 | None | None | None | None | Lcy | PK |
Pathway information
