Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0240 ATGCACGCGCTTCAGATTCAGACAAACTACTCAAACTTGCATTTCATTCTTCTGGTTTTGATCCTTATATTCCCCGTCATATTTGAGGCAATGAAGAGTCCAGTGAGGTTTAAGTTGGGGAAACAGTCGTCCCTGGCGCCAGATGGGCATCTCGATTTATTGGAGGAGCTAGTCAACGAGCACGAAACTGAGGTAGAGATAGATCCGAGGGTGAGGTTGATGTATTTGGCCAATGAAGGTGATTTGGAAGGGATTAATGAACTGTTGGATTCGGGAGTCGATGTCAATTTCCATGATATCGATAATCGGACGGCTCTGCATATTGCTGCTTGCCAGGGATTCGCCGACGTTGTCGCTTTGTTGCTCGAACGTGGCGCTGTAGTTGACTCCAGTGATCGCTGGGGAAGTACGCCTCTTAGGGATGCTGTACATTACAAAAACCACGATGTGATCAAACTTTTGGAGAAGCATGGTGCAAAGCCTCTGGTGGCCCCCATGCTCGTCAAGAATGCCCGTGAAGTGCCAGATTATGAAATTGATCCTAAGGAACTTGATTTTACCAACAGTGTGAACATTACCAAGATATTTCATATTGGAAAGAAACACCTCCAGGGAACATTCCGCGTTGCATCTTGGCGTGGAACTGAGGTTGCTGTGAAAGTGGTTGGAGAAGATCTATTCACCGACGAGGATAAAGTGAGAGCATTCAGAGATGAGCTTGCATTGCTTCAGAAAATACGACACCCTAATGTTGTCCAGTTTCTAGGGGCCGTTACTCAAAGTTGCCCGATGATGATCATTACAGAATATTTGCCAAAGGGAGATCTTGGAGCATTATTGAGTAGACAAAGATCAATGAAAACAATGACTGTTCTGAGACTTGCCCTTGATATTGCAAGGGGGATGAATTATTTGCACGAGAACAAGCCAGCACCAATTATTCATCGTGATCTTGAGCCTTCAAATATTCTGAGGGATGATTCTGGCCACCTGAAAGTAGCAGACTTTGGAGTTAGCAAGTTATTGACAGTTAAAGAAGATAAACCTTCGACTTCTTCAGATACTACTCGAAGGTATGAGGCTCCGGAGGTTTTGAAAAATAAAGAATATGATACGAAGGCAGACGTATTTTCATTTGCTTTGATTCTACAAGAGATGATTGAAGCCTGTCCTCCATTTCCTGATGAGCCAGATAGCGTAGTTCCTAAATTGTATGCGACAGGAGAACGTCCCCCATTTACAGTACCACTTAGACGTTATGCAAATGGACTAAAAAAGCTAATTGAAGAATGCTGGAACGAGAATCCAACAAAGAGGCCAACTTTTAGGCAGATAATAACCCAGCTGGAATTCATTTACAACAGATTTGGTCATAAGAGGCGCTGGAAGGTATCTCATTGCCTCTCTGCTTTTGCTTGCCTCCCCATCCCTAGAATTGTTATAGTGCATAATCTTTTTGAAGATGATGTAGACGGATAA 1479 43.48 MHALQIQTNYSNLHFILLVLILIFPVIFEAMKSPVRFKLGKQSSLAPDGHLDLLEELVNEHETEVEIDPRVRLMYLANEGDLEGINELLDSGVDVNFHDIDNRTALHIAACQGFADVVALLLERGAVVDSSDRWGSTPLRDAVHYKNHDVIKLLEKHGAKPLVAPMLVKNAREVPDYEIDPKELDFTNSVNITKIFHIGKKHLQGTFRVASWRGTEVAVKVVGEDLFTDEDKVRAFRDELALLQKIRHPNVVQFLGAVTQSCPMMIITEYLPKGDLGALLSRQRSMKTMTVLRLALDIARGMNYLHENKPAPIIHRDLEPSNILRDDSGHLKVADFGVSKLLTVKEDKPSTSSDTTRRYEAPEVLKNKEYDTKADVFSFALILQEMIEACPPFPDEPDSVVPKLYATGERPPFTVPLRRYANGLKKLIEECWNENPTKRPTFRQIITQLEFIYNRFGHKRRWKVSHCLSAFACLPIPRIVIVHNLFEDDVDG 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2179730 2185049 - Maker00011658 Lcy1g0240 622152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0240 492 SUPERFAMILY Ankyrin repeat 49 162 IPR036770 -
Lcy1g0240 492 Pfam Protein tyrosine and serine/threonine kinase 211 449 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0240 492 PIRSF ILK 14 471 - -
Lcy1g0240 492 ProSiteProfiles Protein kinase domain profile. 192 452 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0240 492 FunFam Integrin-linked protein kinase family 53 177 - -
Lcy1g0240 492 SMART ANK_2a 101 130 IPR002110 GO:0005515(InterPro)
Lcy1g0240 492 SMART ANK_2a 68 97 IPR002110 GO:0005515(InterPro)
Lcy1g0240 492 SMART ANK_2a 134 163 IPR002110 GO:0005515(InterPro)
Lcy1g0240 492 FunFam serine/threonine-protein kinase STY46-like 179 272 - -
Lcy1g0240 492 SUPERFAMILY Protein kinase-like (PK-like) 207 453 IPR011009 -
Lcy1g0240 492 Gene3D Transferase(Phosphotransferase) domain 1 272 466 - -
Lcy1g0240 492 ProSiteProfiles Ankyrin repeat profile. 101 133 IPR002110 GO:0005515(InterPro)
Lcy1g0240 492 ProSiteProfiles Ankyrin repeat region circular profile. 101 133 - -
Lcy1g0240 492 Pfam Ankyrin repeats (3 copies) 73 161 IPR002110 GO:0005515(InterPro)
Lcy1g0240 492 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 90 450 IPR051681 GO:0004674(PANTHER)
Lcy1g0240 492 Gene3D Phosphorylase Kinase; domain 1 191 271 - -
Lcy1g0240 492 CDD STKc_MAP3K-like 210 449 - -
Lcy1g0240 492 Gene3D - 44 173 IPR036770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0240 Lcy-Chr1:2179730 Lcy3g0858 Lcy-Chr3:30969604 2.11E-41 dispersed
Lcy4g0300 Lcy-Chr4:3693348 Lcy1g0240 Lcy-Chr1:2179730 8.58E-88 transposed
Lcy7g0308 Lcy-Chr7:2631918 Lcy1g0240 Lcy-Chr1:2179730 6.75E-76 transposed
Lcy1g0240 Lcy-Chr1:2179730 Lcy8g1543 Lcy-Chr8:42059683 1.89E-18 wgd
Lcy1g0240 Lcy-Chr1:2179730 Lcy8g1615 Lcy-Chr8:42719413 1.14E-131 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65605 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0240 - - - 0.0