Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy1g0246 | ATGGCTGAGATTTCAGGATCAAGCAATGGACACCACAGTGTTTCTTTGAACATCAAAGATGAACCCACGGCCGTCACCAGCAGAGAAGCAGCCGACTGTATCTCTGTACCTTTCATTCAAAAGTTGATTGCAGAGGTTGTGGGGACATATTTCTTGATATTTGCTGGTGGAGCATCAGTGGTCGTGAATTTGAGCAAAGACAAAGTCATCACTTTCCCAGGGATTTCAATCGTTTGGGGTTTGGTTGTAATGGTCATGGTCTATTCTGTTGGCCATATCTCTGGCGCTCATTTTAACCCTGCTGTCACCATAGCCTTTGCCACTACCAAGAGATTTCCATGGAAACAGGTGCCAGCTTATGTGATAGCTCAAGTTCTTGGATCAACATTGGCAGGTGGGACACTTAGGCTAATATTTAATGGAGAACAAGACCACTTTTCCGGGACTCTCCCAAGTGACTCATATCTGCAGACCTTTGTCATTGAATTCATCATCACATTTTACCTAATGTTTGTGGTTTCTGGTGTTGCCACTGACAATAGAGCCATCGGTGAACTTGCTGGACTTGCCGTTGGTGCCACAGTCCTTCTCAACGTGATGTTTGCAGGGCCAATTACAGGAGCATCCATGAATCCAGCCAGAAGCCTGGGGCCAGCCATAGTATCGAGGCAGTTCAAAGGGTTATGGATTTACATTGTAGCTCCGATTTCTGGGGCAATTTCAGGTGCTTTGGTGTACAACACCATTAGATTCACAGACAAACCTCTACGAGAGATCACAAAAAGTGCTTCTTTCCTCAAAGGACAAGGTCGTAGTGGTTCGCTTTGA | 828 | 45.53 | MAEISGSSNGHHSVSLNIKDEPTAVTSREAADCISVPFIQKLIAEVVGTYFLIFAGGASVVVNLSKDKVITFPGISIVWGLVVMVMVYSVGHISGAHFNPAVTIAFATTKRFPWKQVPAYVIAQVLGSTLAGGTLRLIFNGEQDHFSGTLPSDSYLQTFVIEFIITFYLMFVVSGVATDNRAIGELAGLAVGATVLLNVMFAGPITGASMNPARSLGPAIVSRQFKGLWIYIVAPISGAISGALVYNTIRFTDKPLREITKSASFLKGQGRSGSL | 275 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 2212111 | 2214380 | - | Maker00012070 | Lcy1g0246 | 622158 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy1g0246 | 275 | Gene3D | Glycerol uptake facilitator protein. | 10 | 261 | IPR023271 | - | |
Lcy1g0246 | 275 | Pfam | Major intrinsic protein | 35 | 246 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lcy1g0246 | 275 | CDD | MIP | 40 | 249 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lcy1g0246 | 275 | NCBIfam | MIP family channel protein | 44 | 246 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lcy1g0246 | 275 | ProSitePatterns | MIP family signature. | 97 | 105 | IPR022357 | - | |
Lcy1g0246 | 275 | PRINTS | Major intrinsic protein family signature | 192 | 214 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lcy1g0246 | 275 | PRINTS | Major intrinsic protein family signature | 116 | 135 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lcy1g0246 | 275 | PRINTS | Major intrinsic protein family signature | 161 | 179 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lcy1g0246 | 275 | PRINTS | Major intrinsic protein family signature | 229 | 249 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lcy1g0246 | 275 | PRINTS | Major intrinsic protein family signature | 40 | 59 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lcy1g0246 | 275 | PRINTS | Major intrinsic protein family signature | 79 | 103 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lcy1g0246 | 275 | PANTHER | AQUAPORIN NIP2-1 | 28 | 254 | IPR034294 | - | |
Lcy1g0246 | 275 | SUPERFAMILY | Aquaporin-like | 34 | 260 | IPR023271 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy10g0480 | Lcy-Chr10:11678482 | Lcy1g0246 | Lcy-Chr1:2212111 | 1.03E-68 | dispersed | |
Lcy12g0227 | Lcy-Chr12:2804298 | Lcy1g0246 | Lcy-Chr1:2212111 | 6.13E-104 | dispersed | |
Lcy12g1446 | Lcy-Chr12:32924441 | Lcy1g0246 | Lcy-Chr1:2212111 | 3.89E-68 | dispersed | |
Lcy12g1447 | Lcy-Chr12:32957403 | Lcy1g0246 | Lcy-Chr1:2212111 | 4.93E-67 | dispersed | |
Lcy1g0246 | Lcy-Chr1:2212111 | Lcy6g0718 | Lcy-Chr6:6980340 | 7.23E-28 | dispersed | |
Lcy1g0246 | Lcy-Chr1:2212111 | Lcy10g0489 | Lcy-Chr10:12294132 | 2.57E-72 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy1g0246 | K09874 | - | csv:101219297 | 488.804 |