Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0246 ATGGCTGAGATTTCAGGATCAAGCAATGGACACCACAGTGTTTCTTTGAACATCAAAGATGAACCCACGGCCGTCACCAGCAGAGAAGCAGCCGACTGTATCTCTGTACCTTTCATTCAAAAGTTGATTGCAGAGGTTGTGGGGACATATTTCTTGATATTTGCTGGTGGAGCATCAGTGGTCGTGAATTTGAGCAAAGACAAAGTCATCACTTTCCCAGGGATTTCAATCGTTTGGGGTTTGGTTGTAATGGTCATGGTCTATTCTGTTGGCCATATCTCTGGCGCTCATTTTAACCCTGCTGTCACCATAGCCTTTGCCACTACCAAGAGATTTCCATGGAAACAGGTGCCAGCTTATGTGATAGCTCAAGTTCTTGGATCAACATTGGCAGGTGGGACACTTAGGCTAATATTTAATGGAGAACAAGACCACTTTTCCGGGACTCTCCCAAGTGACTCATATCTGCAGACCTTTGTCATTGAATTCATCATCACATTTTACCTAATGTTTGTGGTTTCTGGTGTTGCCACTGACAATAGAGCCATCGGTGAACTTGCTGGACTTGCCGTTGGTGCCACAGTCCTTCTCAACGTGATGTTTGCAGGGCCAATTACAGGAGCATCCATGAATCCAGCCAGAAGCCTGGGGCCAGCCATAGTATCGAGGCAGTTCAAAGGGTTATGGATTTACATTGTAGCTCCGATTTCTGGGGCAATTTCAGGTGCTTTGGTGTACAACACCATTAGATTCACAGACAAACCTCTACGAGAGATCACAAAAAGTGCTTCTTTCCTCAAAGGACAAGGTCGTAGTGGTTCGCTTTGA 828 45.53 MAEISGSSNGHHSVSLNIKDEPTAVTSREAADCISVPFIQKLIAEVVGTYFLIFAGGASVVVNLSKDKVITFPGISIVWGLVVMVMVYSVGHISGAHFNPAVTIAFATTKRFPWKQVPAYVIAQVLGSTLAGGTLRLIFNGEQDHFSGTLPSDSYLQTFVIEFIITFYLMFVVSGVATDNRAIGELAGLAVGATVLLNVMFAGPITGASMNPARSLGPAIVSRQFKGLWIYIVAPISGAISGALVYNTIRFTDKPLREITKSASFLKGQGRSGSL 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2212111 2214380 - Maker00012070 Lcy1g0246 622158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0246 275 Gene3D Glycerol uptake facilitator protein. 10 261 IPR023271 -
Lcy1g0246 275 Pfam Major intrinsic protein 35 246 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g0246 275 CDD MIP 40 249 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g0246 275 NCBIfam MIP family channel protein 44 246 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g0246 275 ProSitePatterns MIP family signature. 97 105 IPR022357 -
Lcy1g0246 275 PRINTS Major intrinsic protein family signature 192 214 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g0246 275 PRINTS Major intrinsic protein family signature 116 135 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g0246 275 PRINTS Major intrinsic protein family signature 161 179 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g0246 275 PRINTS Major intrinsic protein family signature 229 249 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g0246 275 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g0246 275 PRINTS Major intrinsic protein family signature 79 103 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g0246 275 PANTHER AQUAPORIN NIP2-1 28 254 IPR034294 -
Lcy1g0246 275 SUPERFAMILY Aquaporin-like 34 260 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0480 Lcy-Chr10:11678482 Lcy1g0246 Lcy-Chr1:2212111 1.03E-68 dispersed
Lcy12g0227 Lcy-Chr12:2804298 Lcy1g0246 Lcy-Chr1:2212111 6.13E-104 dispersed
Lcy12g1446 Lcy-Chr12:32924441 Lcy1g0246 Lcy-Chr1:2212111 3.89E-68 dispersed
Lcy12g1447 Lcy-Chr12:32957403 Lcy1g0246 Lcy-Chr1:2212111 4.93E-67 dispersed
Lcy1g0246 Lcy-Chr1:2212111 Lcy6g0718 Lcy-Chr6:6980340 7.23E-28 dispersed
Lcy1g0246 Lcy-Chr1:2212111 Lcy10g0489 Lcy-Chr10:12294132 2.57E-72 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0246 K09874 - csv:101219297 488.804