Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0248 ATGGAAGAAGCTCAGGGCAGTTCGAATACGTTGCCTCCGTTCCTGACAAAGACTTACGAGATGGTCAATGATCCTTCCACGGACCCAGTTGTATCCTGGACTCCAGGTAATAAGAGCTTTATTGTATGGAATCCCCTGGAGTTTTCGAGCGACCTGCTGCCGAGATTCTTCAAGCATAACAACTTCTCAAGCTTCATTAGACAGCTTAATACATATGGTTTTAGGAAAGTGGATCCAGAGAGATGGGAATTTGCAAATGATGATTTTGAAAAAGGTCGGCCAGACCTTTTGCGGAACATCCACAGGCGAAAACCGGTTCATAGCCATTCGTTGCAGAATGTTCAAGGACAGGGACTTTCATCTCCATTGTTGGATCTTGAAAGGAAGAGATTCAAGGAAGAGGTTGAGAGGCTTAAACACACTAATGAAAAGCTTCTTTTGGAGTCTCAGAGACATGACCAAGAGCATCGTGAGTTACAGTTGCAAATGCAATTATTGAAGGAGCGGTTTCAATGTATGCAGCAACAGCAGCAAAAGTTGCTTTCTAATGTAGCGCATGTTTTGCAGAAACCAGAATTGACGATTTATTTTGTGCCAGAATCAGAGTCTCATGATAGAAAGAGGAGGTTGGCAACAATCACCTACTATTACAATGAATCCAATGCTGAGGATGATCAGGCAGAACATTCCCATTCGACGTCAAAACAGCATACGGATTACTCTTCTACCTTAGATCTAAATATGGAGCACCTTGAACAGTTAGATTCTTCCCTAACATTTTGGGAGAGGGCCATTCACGATGCTGATCAAACTATCATTCTACCTAATCTGAGGTCCAATCAGACCAAAGGTGACGTCCAAAGCCCACCTATTCCTTCTGTACAACGAGTTAGGAATCTTCAGTCCAAGTCACATGATATTGACATGAATTCAGAGCCTGTTGGAAGTATTGCTTCTGATCCCATTGCCTCAAGGAAAGAAGCTAGTGAAACCACTGCAATTGTGCGTAACGGGCCTAATGATGTGTTTTGGGAACAGTTCTTGACTGAGAATCCTGGTTCATCCGATCCTCCAAAAGTTGCATCAGAAGGCAAGGATTCTGATAATGGTAGAAAGAATGAGAGTAAATCCATAGGTTTTGGAAAACTTTGGTGGACCGGGAACAAGATAAATAACCTTGCAGAACAGATGGAACATCTTACTCCAACTGAGAAAACTTGA 1221 42.59 MEEAQGSSNTLPPFLTKTYEMVNDPSTDPVVSWTPGNKSFIVWNPLEFSSDLLPRFFKHNNFSSFIRQLNTYGFRKVDPERWEFANDDFEKGRPDLLRNIHRRKPVHSHSLQNVQGQGLSSPLLDLERKRFKEEVERLKHTNEKLLLESQRHDQEHRELQLQMQLLKERFQCMQQQQQKLLSNVAHVLQKPELTIYFVPESESHDRKRRLATITYYYNESNAEDDQAEHSHSTSKQHTDYSSTLDLNMEHLEQLDSSLTFWERAIHDADQTIILPNLRSNQTKGDVQSPPIPSVQRVRNLQSKSHDIDMNSEPVGSIASDPIASRKEASETTAIVRNGPNDVFWEQFLTENPGSSDPPKVASEGKDSDNGRKNESKSIGFGKLWWTGNKINNLAEQMEHLTPTEKT 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2232545 2235047 + Maker00012089 Lcy1g0248 622160

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0248 406 MobiDBLite consensus disorder prediction 361 375 - -
Lcy1g0248 406 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 366 IPR027725 GO:0000978(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0034605(PANTHER)
Lcy1g0248 406 MobiDBLite consensus disorder prediction 347 378 - -
Lcy1g0248 406 Coils Coil 128 183 - -
Lcy1g0248 406 Gene3D - 6 104 IPR036388 -
Lcy1g0248 406 SMART hsfneu3 10 103 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy1g0248 406 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy1g0248 406 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy1g0248 406 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy1g0248 406 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy1g0248 406 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy1g0248 406 FunFam Heat shock transcription factor 1 7 104 - -
Lcy1g0248 406 SUPERFAMILY Winged helix DNA-binding domain 10 103 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0248 K09419 - - csv:101219535 704.901
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1801 Lcy-Chr11:41835701 Lcy1g0248 Lcy-Chr1:2232545 5.50E-56 dispersed
Lcy1g0248 Lcy-Chr1:2232545 Lcy3g1574 Lcy-Chr3:42849003 1.65E-43 dispersed
Lcy1g0248 Lcy-Chr1:2232545 Lcy5g1803 Lcy-Chr5:40790648 7.09E-123 wgd
Lcy1g0248 Lcy-Chr1:2232545 Lcy8g1607 Lcy-Chr8:42657958 3.98E-44 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy11g1582 . 40 240 HSF AT4G17750 60.6 3.8e-63 240.0
Lcy3g1574 . 51 286 HSF AT4G17750 51.4 4.3e-59 226.5
Lcy13g2191 . 43 243 HSF AT4G17750 55.0 9.6e-59 225.3
Lcy12g2165 . 43 245 HSF AT4G17750 54.8 1.6e-58 224.6
Lcy4g2241 . 114 317 HSF AT4G17750 51.6 4.8e-50 196.4
Lcy5g1803 . 13 192 HSF AT4G17750 50.3 3.6e-45 180.3
Lcy8g1607 . 59 157 HSF AT4G17750 70.7 2.6e-40 164.1
Lcy12g1687 . 18 140 HSF AT4G17750 61.0 1.1e-38 158.7
Lcy13g2088 . 20 118 HSF AT4G17750 71.7 1.1e-38 158.7
Lcy9g2093 . 20 118 HSF AT4G17750 69.7 3.2e-38 157.1
Lcy11g1582 . 41 245 HSF AT5G16820 57.5 1.0e-60 231.9
Lcy3g1574 . 52 259 HSF AT5G16820 57.9 1.1e-59 228.4
Lcy12g2165 . 44 249 HSF AT5G16820 56.5 1.4e-59 228.0
Lcy13g2191 . 44 242 HSF AT5G16820 52.7 1.3e-55 214.9
Lcy11g1801 . 17 213 HSF AT5G16820 50.7 5.5e-51 199.5
Lcy4g2241 . 115 299 HSF AT5G16820 53.9 1.3e-47 188.3
Lcy1g0248 . 9 191 HSF AT5G16820 50.8 2.5e-43 174.1
Lcy2g0812 . 11 178 HSF AT5G16820 50.5 1.8e-41 167.9
Lcy8g1607 . 60 153 HSF AT5G16820 78.7 2.2e-39 161.0
Lcy3g1574 . 40 255 HSF AT1G32330 53.5 5.0e-60 229.6
Lcy11g1582 . 29 230 HSF AT1G32330 54.5 8.5e-60 228.8
Lcy12g2165 . 16 229 HSF AT1G32330 51.1 1.8e-57 221.1
Lcy13g2191 . 32 225 HSF AT1G32330 53.9 8.2e-55 212.2
Lcy11g1801 . 15 191 HSF AT1G32330 50.5 3.7e-47 186.8
Lcy8g1607 . 58 153 HSF AT1G32330 75.0 4.4e-40 163.3
Lcy13g2088 . 20 117 HSF AT1G32330 71.4 7.0e-38 156.0
Lcy12g2165 . 44 264 HSF AT3G02990 54.4 2.3e-62 237.3
Lcy11g1582 . 41 244 HSF AT3G02990 57.1 8.8e-62 235.3
Lcy3g1574 . 52 269 HSF AT3G02990 54.7 4.8e-60 229.6
Lcy13g2191 . 44 243 HSF AT3G02990 52.7 1.9e-56 217.6
Lcy8g1607 . 60 153 HSF AT3G02990 76.6 1.6e-39 161.4
Lcy11g1582 . 29 240 HSF AT2G26150 58.1 3.3e-66 249.6
Lcy3g1574 . 40 254 HSF AT2G26150 57.9 7.4e-66 248.4
Lcy4g2241 . 98 317 HSF AT2G26150 53.8 9.4e-61 231.5
Lcy11g1801 . 17 213 HSF AT4G18880 51.5 2.2e-53 207.2
Lcy11g1801 . 3 467 HSF AT4G13980 51.7 2.7e-119 426.4
Lcy8g1607 . 51 158 HSF AT4G13980 67.6 1.2e-39 161.8
Lcy11g1582 . 29 221 HSF AT5G43840 53.9 1.8e-54 210.3
Lcy13g2191 . 32 235 HSF AT5G43840 52.9 2.0e-48 190.3
Lcy3g1574 . 12 366 HSF AT3G22830 50.1 4.7e-96 349.0
Lcy11g1582 . 29 339 HSF AT3G22830 53.5 1.7e-90 330.5
Lcy12g2165 . 32 344 HSF AT3G22830 52.1 2.4e-87 320.1
Lcy3g1574 . 39 341 HSF AT3G51910 53.2 7.1e-72 268.1
Lcy12g2165 . 32 324 HSF AT3G51910 53.2 6.7e-70 261.5
Lcy13g2191 . 32 248 HSF AT3G51910 52.5 7.2e-56 214.9
Lcy13g2191 . 32 231 HSF AT3G63350 52.9 6.5e-52 201.8
Lcy3g1574 . 53 241 HSF AT1G67970 51.3 7.8e-45 178.7
Lcy4g2241 . 109 318 HSF AT5G54070 54.0 6.9e-53 205.3
Lcy1g0992 . 76 376 HSF AT4G36990 52.3 2.0e-72 270.0
Lcy13g2088 . 17 115 HSF AT5G62020 66.7 4.3e-38 156.0
Lcy12g1687 . 41 361 HSF AT4G11660 54.7 2.2e-79 293.5
Lcy9g2093 . 16 122 HSF AT4G11660 72.9 6.0e-45 179.1
Lcy13g2088 . 16 119 HSF AT4G11660 73.1 3.9e-44 176.4
Lcy1g0992 . 76 174 HSF AT4G11660 73.7 1.3e-42 171.4
Lcy11g0537 . 13 111 HSF AT4G11660 69.7 9.3e-38 155.2
Lcy11g0537 . 3 215 HSF AT2G41690 53.0 2.3e-53 206.5
Lcy1g1909 . 7 220 HSF AT2G41690 52.1 7.4e-52 201.4
Lcy9g2093 . 1 338 HSF AT1G46264 51.8 2.6e-90 329.7
Lcy13g2088 . 19 378 HSF AT1G46264 51.2 7.2e-85 311.6
Lcy1g0992 . 78 272 HSF AT1G46264 50.7 1.4e-51 201.1
Lcy8g1607 . 52 152 HSF AT1G46264 70.3 3.9e-38 156.4
Lcy11g1801 . 9 108 HSF AT1G46264 70.0 5.6e-37 152.5
Lcy12g2165 . 22 146 HSF AT1G46264 57.9 1.6e-36 151.0
Lcy2g0812 . 10 300 HSF AT3G24520 52.1 1.6e-65 247.3
Lcy11g1582 . 40 240 HSF AT4G17750 60.6 3.8e-63 240.0
Lcy3g1574 . 51 286 HSF AT4G17750 51.4 4.3e-59 226.5
Lcy13g2191 . 43 243 HSF AT4G17750 55.0 9.6e-59 225.3
Lcy12g2165 . 43 245 HSF AT4G17750 54.8 1.6e-58 224.6
Lcy4g2241 . 114 317 HSF AT4G17750 51.6 4.8e-50 196.4
Lcy5g1803 . 13 192 HSF AT4G17750 50.3 3.6e-45 180.3
Lcy8g1607 . 59 157 HSF AT4G17750 70.7 2.6e-40 164.1
Lcy12g1687 . 18 140 HSF AT4G17750 61.0 1.1e-38 158.7
Lcy13g2088 . 20 118 HSF AT4G17750 71.7 1.1e-38 158.7
Lcy9g2093 . 20 118 HSF AT4G17750 69.7 3.2e-38 157.1
Lcy11g1582 . 41 245 HSF AT5G16820 57.5 1.0e-60 231.9
Lcy3g1574 . 52 259 HSF AT5G16820 57.9 1.1e-59 228.4
Lcy12g2165 . 44 249 HSF AT5G16820 56.5 1.4e-59 228.0
Lcy13g2191 . 44 242 HSF AT5G16820 52.7 1.3e-55 214.9
Lcy11g1801 . 17 213 HSF AT5G16820 50.7 5.5e-51 199.5
Lcy4g2241 . 115 299 HSF AT5G16820 53.9 1.3e-47 188.3
Lcy1g0248 . 9 191 HSF AT5G16820 50.8 2.5e-43 174.1
Lcy2g0812 . 11 178 HSF AT5G16820 50.5 1.8e-41 167.9
Lcy8g1607 . 60 153 HSF AT5G16820 78.7 2.2e-39 161.0
Lcy3g1574 . 40 255 HSF AT1G32330 53.5 5.0e-60 229.6
Lcy11g1582 . 29 230 HSF AT1G32330 54.5 8.5e-60 228.8
Lcy12g2165 . 16 229 HSF AT1G32330 51.1 1.8e-57 221.1
Lcy13g2191 . 32 225 HSF AT1G32330 53.9 8.2e-55 212.2
Lcy11g1801 . 15 191 HSF AT1G32330 50.5 3.7e-47 186.8
Lcy8g1607 . 58 153 HSF AT1G32330 75.0 4.4e-40 163.3
Lcy13g2088 . 20 117 HSF AT1G32330 71.4 7.0e-38 156.0
Lcy12g2165 . 44 264 HSF AT3G02990 54.4 2.3e-62 237.3
Lcy11g1582 . 41 244 HSF AT3G02990 57.1 8.8e-62 235.3
Lcy3g1574 . 52 269 HSF AT3G02990 54.7 4.8e-60 229.6
Lcy13g2191 . 44 243 HSF AT3G02990 52.7 1.9e-56 217.6
Lcy8g1607 . 60 153 HSF AT3G02990 76.6 1.6e-39 161.4
Lcy11g1582 . 29 240 HSF AT2G26150 58.1 3.3e-66 249.6
Lcy3g1574 . 40 254 HSF AT2G26150 57.9 7.4e-66 248.4
Lcy4g2241 . 98 317 HSF AT2G26150 53.8 9.4e-61 231.5
Lcy11g1801 . 17 213 HSF AT4G18880 51.5 2.2e-53 207.2
Lcy11g1801 . 3 467 HSF AT4G13980 51.7 2.7e-119 426.4
Lcy8g1607 . 51 158 HSF AT4G13980 67.6 1.2e-39 161.8
Lcy11g1582 . 29 221 HSF AT5G43840 53.9 1.8e-54 210.3
Lcy13g2191 . 32 235 HSF AT5G43840 52.9 2.0e-48 190.3
Lcy3g1574 . 12 366 HSF AT3G22830 50.1 4.7e-96 349.0
Lcy11g1582 . 29 339 HSF AT3G22830 53.5 1.7e-90 330.5
Lcy12g2165 . 32 344 HSF AT3G22830 52.1 2.4e-87 320.1
Lcy3g1574 . 39 341 HSF AT3G51910 53.2 7.1e-72 268.1
Lcy12g2165 . 32 324 HSF AT3G51910 53.2 6.7e-70 261.5
Lcy13g2191 . 32 248 HSF AT3G51910 52.5 7.2e-56 214.9
Lcy13g2191 . 32 231 HSF AT3G63350 52.9 6.5e-52 201.8
Lcy3g1574 . 53 241 HSF AT1G67970 51.3 7.8e-45 178.7
Lcy4g2241 . 109 318 HSF AT5G54070 54.0 6.9e-53 205.3
Lcy1g0992 . 76 376 HSF AT4G36990 52.3 2.0e-72 270.0
Lcy13g2088 . 17 115 HSF AT5G62020 66.7 4.3e-38 156.0
Lcy12g1687 . 41 361 HSF AT4G11660 54.7 2.2e-79 293.5
Lcy9g2093 . 16 122 HSF AT4G11660 72.9 6.0e-45 179.1
Lcy13g2088 . 16 119 HSF AT4G11660 73.1 3.9e-44 176.4
Lcy1g0992 . 76 174 HSF AT4G11660 73.7 1.3e-42 171.4
Lcy11g0537 . 13 111 HSF AT4G11660 69.7 9.3e-38 155.2
Lcy11g0537 . 3 215 HSF AT2G41690 53.0 2.3e-53 206.5
Lcy1g1909 . 7 220 HSF AT2G41690 52.1 7.4e-52 201.4
Lcy9g2093 . 1 338 HSF AT1G46264 51.8 2.6e-90 329.7
Lcy13g2088 . 19 378 HSF AT1G46264 51.2 7.2e-85 311.6
Lcy1g0992 . 78 272 HSF AT1G46264 50.7 1.4e-51 201.1
Lcy8g1607 . 52 152 HSF AT1G46264 70.3 3.9e-38 156.4
Lcy11g1801 . 9 108 HSF AT1G46264 70.0 5.6e-37 152.5
Lcy12g2165 . 22 146 HSF AT1G46264 57.9 1.6e-36 151.0
Lcy2g0812 . 10 300 HSF AT3G24520 52.1 1.6e-65 247.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001764 2 9 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 1 2 5 4 2 69
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19492 None None None None Lcy TF