Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0253 ATGATGTCCAAATCGTATACAAATCTTTTAGATTTAGCTTCAGGGAATTTTCCCATTATGGGTCGTGAGAAGAAGCGACTTCCACGAGTAATGACTGTTGCGGGGGTAATATCAGAACTTGATGATGAGCAGGCAAATAGTGTGACTTCCGAGGGACCTTCCTCAGTTGTGCAAGACCGTATAATTATTGTTGCCAATCAGCTTCCTATTAAAGCTAAGCGTAGACCAGATAATAAGGGCTGGAGTTTTAGTTGGGATGAAGATTCTTTGCTGTGGCAGCTCAAGGATGGTTTGCCTGAAGAAATGGAGGTTTTGTATGTAGGATCTTTGCGGGTGGATGTTGATTCTAGCGAACAAGATGATGTATCACAACTTTTGTTGGAGAGGTTTAAGTGTGTTCCTGCGTTTTTGCCTCATGACATTTTATCAAAATTTTATCATGGTTTTTGTAAGCAGCAATTGTGGCCACTCTTTCATTATATGCTTCCGTTCTCAGCTACTCATGGTGGTCGGTTTGATCGGTCTCTGTGGGAGGCATATGTAGCAGCAAATAAAATTTTTTCTCAAAGGGTGATCGAGGTCATAAACCCAGATGATGACTTTGTATGGATTCATGATTACCATTTAATGGTGCTGCCCTCCTTCTTGCGGAGAAGATTTACAAGATTGAGAATGGGCTTTTTTCTTCACAGTCCATTTCCTTCCTCAGAAATATACAGGACTTTGCCAGTGAGGGAAGAAATTCTTAAGGCACTTTTGAATTCGGACCTTATTGGTTTTCACACTTTTGACTATGCTCGACATTTCCTGTCTTGTTGTAGTCGAATGTTGGGTTTGGAATATCAGTCAAAGAGGGGTTATATTGGGTTGGAATATTTTGGAAGGACCGTGGGGATAAAGATCATGCCCGTTGGAATTCACATGGGCCAGATGGAGTCAGTGTTAAGACTAGCTGATAAAGACTGGAGAGTACAGGAGCTCAGGCGACAGTTTGAAGGAAAAGTTGTCTTACTTGGAGTTGATGATATGGACATCTTTAAAGGGGTCAATCTGAAGTTGTTGGCAATGGAACAAATGCTAAAGCAACATCCAAAGTGGCAGGGAAGAGCCGTTTTCATACAGATTGCAAACCCAGCGAGAGGAAGAGGGAAAGATCTGGAGGAAATACAAGATGAAATACAGGAATGCTGCAAGAGAATTAATGAAACTTTTGGACAGCCAAATTATGAACCAATTGTGTTCATTGATCGGCCTGTTTCTCTCACTGAAAGAGCTGCATACTATACTATTGCCGAATGTGTTGTAGTCACAGCGGTTAGGGATGGTATGAACCTAACTCCTTATGAGTATGTTGTCTGCAGACAGGGAGCCTCTGGATCAGATTATAGCACAGAAACAAATGGACCACAAAAAAGCATGTTAGTCATATCAGAGTTCATGGGATGTTCCCCTTCTCTCAGTGGTGCAATACGGGTTAACCCATGGAACATTGAAGCAACTGCCGAAGCATTGAATGAGGCAATATCAATGTCTGATGCTGAGAAGCAATTGCGCCATGAAAAACATTATAAATATGTGAGTACACATGATGTGGCATACTGGTCAAAGAGTTTTTTCCAAGATATGGAAAGAACTTGTAAGGATCACTTCAGAAGACGATGCTGGGGAATTGGGTTGGGCTTTGGTTTCAGAGTTGTAGCGCTGGATCCTAACTTTAGAAAGTTGTCTATTGATGCCATTGTAGCTGCATATTCGAGGTCTAAAAGGAGGGCTATACTTTTGGATTATGATGGCACTGTCATGCCACAAACTTCAATTGATAAAACCCCAAGTCATCAAGTTATTTCAATCATAGATTCACTTTGTGATGATGTTAGGAATACTGTTTTTGTTGTCAGTGGAAGAGGGCGTGATAGTTTGGGCAACTGGTTTTCTCCTTGCGATAAACTTGGGATTGCGGCAGAGCATGGCTATTTTATGAGGTGGTCTGCTGATAAGGACTGGGAAAATTGTGGTCAAGGTAGTGATTTTGGTTGGATACAAATCGCAGAGCCAGTCATGAAATTATATACAGAAGCTACTGACGGCTCTTCTATTGAAACCAAGGAAAGTGCCTTGGTGTGGCACCACCAGGATGCGGACCCTGATTTTGGTTGCAGCCAGGCCAAGGAACTATTGGATCACCTTGAAAGTGTGCTGGCAAATGAACCAGTAGCCGTAAAAAGTGGTCAGTTTATTGTAGAAGTGAAGCCACAGGTACTTTCTGTTACTTTAAACTTCTGA 2283 41.87 MMSKSYTNLLDLASGNFPIMGREKKRLPRVMTVAGVISELDDEQANSVTSEGPSSVVQDRIIIVANQLPIKAKRRPDNKGWSFSWDEDSLLWQLKDGLPEEMEVLYVGSLRVDVDSSEQDDVSQLLLERFKCVPAFLPHDILSKFYHGFCKQQLWPLFHYMLPFSATHGGRFDRSLWEAYVAANKIFSQRVIEVINPDDDFVWIHDYHLMVLPSFLRRRFTRLRMGFFLHSPFPSSEIYRTLPVREEILKALLNSDLIGFHTFDYARHFLSCCSRMLGLEYQSKRGYIGLEYFGRTVGIKIMPVGIHMGQMESVLRLADKDWRVQELRRQFEGKVVLLGVDDMDIFKGVNLKLLAMEQMLKQHPKWQGRAVFIQIANPARGRGKDLEEIQDEIQECCKRINETFGQPNYEPIVFIDRPVSLTERAAYYTIAECVVVTAVRDGMNLTPYEYVVCRQGASGSDYSTETNGPQKSMLVISEFMGCSPSLSGAIRVNPWNIEATAEALNEAISMSDAEKQLRHEKHYKYVSTHDVAYWSKSFFQDMERTCKDHFRRRCWGIGLGFGFRVVALDPNFRKLSIDAIVAAYSRSKRRAILLDYDGTVMPQTSIDKTPSHQVISIIDSLCDDVRNTVFVVSGRGRDSLGNWFSPCDKLGIAAEHGYFMRWSADKDWENCGQGSDFGWIQIAEPVMKLYTEATDGSSIETKESALVWHHQDADPDFGCSQAKELLDHLESVLANEPVAVKSGQFIVEVKPQVLSVTLNF 760
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2266078 2271768 - Maker00011759 Lcy1g0253 622165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0253 760 Gene3D - 673 752 - -
Lcy1g0253 760 Pfam Glycosyltransferase family 20 60 543 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Lcy1g0253 760 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 53 312 - -
Lcy1g0253 760 CDD GT20_TPS 60 543 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Lcy1g0253 760 Gene3D Glycogen Phosphorylase B; 50 320 - -
Lcy1g0253 760 Gene3D - 592 672 IPR023214 -
Lcy1g0253 760 Pfam Trehalose-phosphatase 593 755 IPR003337 GO:0005992(InterPro)
Lcy1g0253 760 SUPERFAMILY HAD-like 590 752 IPR036412 -
Lcy1g0253 760 Gene3D Glycogen Phosphorylase B; 321 528 - -
Lcy1g0253 760 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 24 754 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Lcy1g0253 760 FunFam Trehalose-6-phosphate synthase 2 673 752 - -
Lcy1g0253 760 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 589 706 - -
Lcy1g0253 760 NCBIfam trehalose-phosphatase 587 753 IPR003337 GO:0005992(InterPro)
Lcy1g0253 760 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 547 - -
Lcy1g0253 760 FunFam Alpha,alpha-trehalose-phosphate synthase 314 527 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0253 Lcy-Chr1:2266078 Lcy6g2240 Lcy-Chr6:46976806 0 dispersed
Lcy1g0253 Lcy-Chr1:2266078 Lcy4g0684 Lcy-Chr4:8257974 0 wgd
Lcy1g0253 Lcy-Chr1:2266078 Lcy8g1559 Lcy-Chr8:42226385 4.21E-245 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0253 K16055 - csv:101213082 1496.87