Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0260 ATGAATGTCAGAAATCCAACGGCTGCATCATTGCCACACTCCTCTGCAGTTCACAGCGAAGATGGAGAAATCATGGTCTTGACCACACAATGGCTTTCCTCAGTCACAGTCAGTAGTGGTTTCTTTATTTCTTACACTTGTGCGGCTGGACCAGCTCTCGCTTTCATATTCCTTCCCTCTTCTTTTGTGTTTACAAGCTTGGTAATGGAAGTTGTAAAGCTGATTCTGTTGCTGTTCGTCCTCACCTGGGTGGTCTCTGCCTCAGACAGTCATTTGTCTCCGAAAGGCGTAAACTATGAAGTGGCGGCTTTGATGTCAGTGAAGAGTAGGATAAGGGATGAGCGAAGGGTGATGGAGGGTTGGGACATAAATTCGGTTGATCCATGCACCTGGAATATGGTTGCTTGCTCTGCTGAGGGCTTTGTGATTTCTCTTGAAATGCCAAATATGAGCTTATCTGGAACGCTTTCCCCTAGCATTGGAAACCTGAGTCACCTTCGGACAATGCTGTTGCAAAATAATGGATTATCTGGCCCAATCCCTGATGATATAGGAGCACTTTCAGAGCTTCAAACTCTTGACCTTTCTAGTAACCAGTTTGAAGGAGGCATTCCGAGTTCTTTGGGTTTTCTTACTCATCTAAATTACTTGAAGCTTAGTAGTAACAAGTTAAGTGGACCAATACCGGAATCTGTTGCAAATATCTCGGGCCTTTCCTTTTTGGATTTATCAAATAATAATCTCAGTGGTCCAACTCCAAGAATACTAGCCAAAGAGTACAGTGTTGCAGGGAATAGCTTCCTTTGTGCATCTGCATCATCTAAAGTTTGTGGAGTAGTTTCAAAACCAGTTAACGAAACTGCTTCGCCTCACAAAGATAATGGCCATCGTCACTTGGTTCTTTCCATAGCTCTGATTGTCAGTTTCACATTTGTGGTTTCTGTTGTGTTACTTGTTGGCTGGGTGCATTGTTATAGATCTCATCTTGTCTTTACATCCTACGTGCAGCAAGATTATGAATTTGATATAGGTCATCTGAAAAGGTTTACATTCCGTGAACTACAAAAGGCAACATGTAATTTTAGTCCCCAAAACATCCTGGGACAGGGTGGTTTTGGAGTAGTTTATAAAGGTTATCTTCCAAATGGGACATATGTTGCTGTCAAGAGACTGAAAGATCCAAATTATACTGGAGAAGTGCAGTTCCAAACTGAAGTTGAAATGATTGGCTTAGCAGTGCACCGCAACCTCTTGCGTTTGTATGGCTTTTGTATGACGCCAGATGAGAGGTTGCTTGTTTATCCATATATGCCAAATGGGAGTGTTGCTGACCGCCTGAGAGATGCAGGCCAAGAGAAGCCATCATTGAATTGGAACAGAAGATTGCGTATTGCCCTTGGCGCAGCACGTGGACTTCTATACTTGCATGAGCAGTGTAACCCAAAAATTATTCACCGAGATGTGAAAGCTGCAAATATTCTTCTAGATGAAAGCTTTGAAGCCGTGGTCGGGGACTTTGGTCTGGCAAAGATGTTAGATAGAAGGGATTCACATGTTACTACTGCAGTTAGGGGCACAGTGGGACATATTGCCCCGGAATATCTTTCAACTGGACAATCTTCAGAAAAGACTGATGTTTTTGGATTTGGGATATTGGTTCTGGAACTCTTAACAGGGCAAAAAGCACTAGATGCTGGCAATGGTCAGGTTCGAAAGGGAATGATTCTCGAATGGGTTAGAACATTACATGAGGAGAAGAGGTTAGATGTGCTGGTGGACAGGGATCTAAAAGGATGTTTTGATGCAATGGAGCTGGAAAAAGCCGTAGAGTTGGCTCTACAGTGTACTCAGTCACATCCACAACTCAGACCAAAGATGTCCGAGATTTTGAAGGTTTTAGAAGGTCTTGTTGGACAGTCGAACCAAATGGAGGAATCCCCAGGTGGAGCAAGTCTATACGAGGATAGAGCTCACAGTTTCTCCAGAAATTACAGTGATATTCATGAAGAATCTTCATTCGTCGTTGAAGCCATGGAGCTTTCAGGACCTCGGTGA 2055 43.31 MNVRNPTAASLPHSSAVHSEDGEIMVLTTQWLSSVTVSSGFFISYTCAAGPALAFIFLPSSFVFTSLVMEVVKLILLLFVLTWVVSASDSHLSPKGVNYEVAALMSVKSRIRDERRVMEGWDINSVDPCTWNMVACSAEGFVISLEMPNMSLSGTLSPSIGNLSHLRTMLLQNNGLSGPIPDDIGALSELQTLDLSSNQFEGGIPSSLGFLTHLNYLKLSSNKLSGPIPESVANISGLSFLDLSNNNLSGPTPRILAKEYSVAGNSFLCASASSKVCGVVSKPVNETASPHKDNGHRHLVLSIALIVSFTFVVSVVLLVGWVHCYRSHLVFTSYVQQDYEFDIGHLKRFTFRELQKATCNFSPQNILGQGGFGVVYKGYLPNGTYVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPYMPNGSVADRLRDAGQEKPSLNWNRRLRIALGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKMLDRRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILVLELLTGQKALDAGNGQVRKGMILEWVRTLHEEKRLDVLVDRDLKGCFDAMELEKAVELALQCTQSHPQLRPKMSEILKVLEGLVGQSNQMEESPGGASLYEDRAHSFSRNYSDIHEESSFVVEAMELSGPR 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2349628 2354903 - Maker00011707 Lcy1g0260 622172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0260 684 Pfam Leucine rich repeat N-terminal domain 98 137 IPR013210 -
Lcy1g0260 684 Gene3D Phosphorylase Kinase; domain 1 331 436 - -
Lcy1g0260 684 FunFam Somatic embryogenesis receptor-like kinase 1 437 649 - -
Lcy1g0260 684 Pfam Protein kinase domain 364 631 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0260 684 FunFam Somatic embryogenesis receptor kinase 1 330 436 - -
Lcy1g0260 684 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 74 684 - -
Lcy1g0260 684 ProSitePatterns Serine/Threonine protein kinases active-site signature. 483 495 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0260 684 FunFam Putative LRR receptor-like serine/threonine-protein kinase 97 279 - -
Lcy1g0260 684 Gene3D Ribonuclease Inhibitor 97 279 IPR032675 -
Lcy1g0260 684 SMART serkin_6 361 633 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0260 684 Pfam Leucine Rich Repeat 165 187 IPR001611 GO:0005515(InterPro)
Lcy1g0260 684 Pfam Leucine Rich Repeat 190 211 IPR001611 GO:0005515(InterPro)
Lcy1g0260 684 Pfam Leucine Rich Repeat 213 234 IPR001611 GO:0005515(InterPro)
Lcy1g0260 684 Pfam Leucine Rich Repeat 238 257 IPR001611 GO:0005515(InterPro)
Lcy1g0260 684 Gene3D Transferase(Phosphotransferase) domain 1 437 645 - -
Lcy1g0260 684 SUPERFAMILY L domain-like 99 259 - -
Lcy1g0260 684 ProSitePatterns Protein kinases ATP-binding region signature. 367 389 IPR017441 GO:0005524(InterPro)
Lcy1g0260 684 ProSiteProfiles Protein kinase domain profile. 361 637 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0260 684 SUPERFAMILY Protein kinase-like (PK-like) 343 634 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0260 Lcy-Chr1:2349628 Lcy7g0388 Lcy-Chr7:3288478 5.07E-180 dispersed
Lcy9g2197 Lcy-Chr9:46583247 Lcy1g0260 Lcy-Chr1:2349628 4.40E-39 dispersed
Lcy1g0260 Lcy-Chr1:2349628 Lcy6g0663 Lcy-Chr6:6313621 6.56E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65606 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0260 - - - 0.0