Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0262 ATGGCCGACCGGCCGGACCCCGACAAGAAGACTGAAACCACCAGGAAGGACATGCCGGCTCTTCTTTTGGGTCGATACGAGATCGGGAAGCTCCTTGGCCATGGCACCTTCGCTAAGGTCTACCATGCCCGCAACATCAAAACCAACGAAAGCGTCGCCATTAAAGTCATCGACAAGGAGAAGATCCTCAAGGGCGGCCTTATCGCCCACATCAAACGCGAGATCTCAATCCTCCGCCGCGTTCGCCACCCCAATATTGTGCAACTCTTCGAGGTTATGGCCACCAAGGCCAAGATCTACTTCGTTATGGAATATGTCCGAGGCGGCGAGCTTTTCAAGAAGGTCTCCAAGGGCCGATTGAAGGAAGAGGTCGCTCGAAAGTACTTTCAGCAATTAATCTCTGCTGTTGGCTTTTGCCACGCGCGTGGTGTTTATCATCGCGACCTTAAACCGGAGAATTTGTTGCTCGATGAAAATGGGAATCTGAAGGTCTCCGATTTCGGCCTCAGCGCCGTCTCCGATCAAATTCGACAGGATGGGTTGTTTCATACTTTTTGTGGTACACCGGCGTATGTTGCTCCGGAGGTTTTGGCCCGAAAAGGGTATGAGGCCGCTAAGGTCGATATTTGGTCTTGTGGGGTTATTCTGTTTGTTCTGATGGCCGGTTATCTGCCCTTCCATGACCAAAATATTATGGCAATGTATAAGAAGATTTACAAGGGGGAGTTTCGGTGTCCGAGATGGTTCTCACCGGAGCTAATTCGGCTTCTAACTCGTCTGTTAGACACAAATCCCGAAACCCGTTTCACAATTCCTGAAATCATGGAGAACAGATGGTTCAAAAAGGGGTATAAACATATCAAATTCTACATCGAAGATGATAAGGTCTGCAGCGTTGAGGATGACAACGATGATGTCGATTCCTTGTCGGATCAATCTCTATCGGAATCGGATTCCGAAATTATTGAGACCAGAAGAAAGCCGGGTTCACTCCCAAGACCGGCGAGTTTGAATGCATTTGATATCATTTCGTTTTCGCCTGGATTTGATCTTTCTGGGTTGTTTGAGGATGGAGGGGAAGAGGCTAGATTTGTCTCCAGTGCTCCGGTGTCAAAGATTATATCGAAATTGGAGGAGATTGCAAAATTGGTGAGTTTCACTGTGAGGAAGAAGGATTGCAGGGTTAGTTTAGAGGGCTCACGGGAAGGTGTAAAAGGGCCATTGACGATCGCGGCCGAGGTATTCGAGTTGACGCCGAAATTGGTGATGGTGGAGGTGAAGAGGAAAGGGGGAGATAAAGCAGAGTATGAACAGTTCTGTAATAAGGAATTGAAACCAGCATTGTTGAATCTGAAAGTGGAGGACTCTGCTGCTGCAGCACATATACAATCAGATACTGAATGA 1404 48.01 MADRPDPDKKTETTRKDMPALLLGRYEIGKLLGHGTFAKVYHARNIKTNESVAIKVIDKEKILKGGLIAHIKREISILRRVRHPNIVQLFEVMATKAKIYFVMEYVRGGELFKKVSKGRLKEEVARKYFQQLISAVGFCHARGVYHRDLKPENLLLDENGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYEAAKVDIWSCGVILFVLMAGYLPFHDQNIMAMYKKIYKGEFRCPRWFSPELIRLLTRLLDTNPETRFTIPEIMENRWFKKGYKHIKFYIEDDKVCSVEDDNDDVDSLSDQSLSESDSEIIETRRKPGSLPRPASLNAFDIISFSPGFDLSGLFEDGGEEARFVSSAPVSKIISKLEEIAKLVSFTVRKKDCRVSLEGSREGVKGPLTIAAEVFELTPKLVMVEVKRKGGDKAEYEQFCNKELKPALLNLKVEDSAAAAHIQSDTE 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2377264 2378667 + Maker00011619 Lcy1g0262 622174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0262 467 SUPERFAMILY Protein kinase-like (PK-like) 22 315 IPR011009 -
Lcy1g0262 467 Gene3D Kinase associated domain 1, KA1 332 452 - -
Lcy1g0262 467 FunFam Non-specific serine/threonine protein kinase 16 322 - -
Lcy1g0262 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0262 467 CDD STKc_SnRK3 25 279 - -
Lcy1g0262 467 ProSiteProfiles NAF domain profile. 332 356 IPR018451 GO:0007165(InterPro)
Lcy1g0262 467 Gene3D Transferase(Phosphotransferase) domain 1 17 329 - -
Lcy1g0262 467 Pfam NAF domain 334 390 IPR004041 GO:0007165(InterPro)
Lcy1g0262 467 ProSiteProfiles Protein kinase domain profile. 26 280 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0262 467 Pfam Protein kinase domain 26 280 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0262 467 MobiDBLite consensus disorder prediction 302 329 - -
Lcy1g0262 467 SMART serkin_6 26 280 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0262 467 CDD CIPK_C 338 448 - -
Lcy1g0262 467 ProSitePatterns Protein kinases ATP-binding region signature. 32 55 IPR017441 GO:0005524(InterPro)
Lcy1g0262 467 FunFam Non-specific serine/threonine protein kinase 18 105 - -
Lcy1g0262 467 FunFam Non-specific serine/threonine protein kinase 334 452 - -
Lcy1g0262 467 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 14 446 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0262 Lcy-Chr1:2377264 Lcy2g0170 Lcy-Chr2:1345199 2.90E-180 dispersed
Lcy8g2184 Lcy-Chr8:47915589 Lcy1g0262 Lcy-Chr1:2377264 8.80E-30 dispersed
Lcy1g0262 Lcy-Chr1:2377264 Lcy5g1821 Lcy-Chr5:40981273 3.31E-184 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65608 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0262 - - - 0.0