Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy1g0269 | ATGGCTGAGGTCCACAGTAGCAACGCCAATGGAATTAAGCTCTTTGGCACTATGATCACTTTACAGACCAGAAAAATCAAGGAGGAGCCGGAGAAAGGCGGCGGCGGAGATCAATCGGAGATGAAGAGGCCGGAAAAAATCATTCCATGTCCAAGATGCAAGAGCATGGAGACCAAATTCTGTTACTTCAACAATTACAATGTTAATCAGCCGAGACATTTCTGCAAGGGTTGCCAGAGGTACTGGACGGCCGGTGGGGCGCTCCGGAACGTGCCCATCGGAGCCGGCCGCCGGAGAGCCAAGCCTCCGCCCAATTGCCGGAGCCTTTCCGGCGAGCTGCCGGAGGATTACGGGCAGCTTTACGATGCTGCTTCTGGGATTATTCATCAGCTTGAGTTGGACGCGGTGGAGGGGTGGCATCTCACGGTGGCGGAGCAGGATTTCGGCCAAGTTTTTCCTCTCAAACGCCAGAAGATTATCGGTCAACACGGTCAAACGTCTTAA | 504 | 53.77 | MAEVHSSNANGIKLFGTMITLQTRKIKEEPEKGGGGDQSEMKRPEKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPPPNCRSLSGELPEDYGQLYDAASGIIHQLELDAVEGWHLTVAEQDFGQVFPLKRQKIIGQHGQTS | 167 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 2459445 | 2459948 | + | Maker00012001 | Lcy1g0269 | 622181 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy1g0269 | 167 | ProSitePatterns | Zinc finger Dof-type signature. | 50 | 86 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Lcy1g0269 | 167 | ProSiteProfiles | Zinc finger Dof-type profile. | 48 | 102 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Lcy1g0269 | 167 | PANTHER | CYCLIC DOF FACTOR 2 | 28 | 109 | IPR045174 | GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0006355(InterPro) | |
| Lcy1g0269 | 167 | Pfam | Dof domain, zinc finger | 46 | 101 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Lcy1g0269 | 167 | MobiDBLite | consensus disorder prediction | 24 | 43 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy1g0269 | Lcy-Chr1:2459445 | Lcy5g2541 | Lcy-Chr5:48173679 | 6.75E-35 | dispersed | |
| Lcy1g0269 | Lcy-Chr1:2459445 | Lcy5g1831 | Lcy-Chr5:41135274 | 8.15E-58 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 19496 | None | None | None | None | Lcy | TF |
Pathway information