Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0269 ATGGCTGAGGTCCACAGTAGCAACGCCAATGGAATTAAGCTCTTTGGCACTATGATCACTTTACAGACCAGAAAAATCAAGGAGGAGCCGGAGAAAGGCGGCGGCGGAGATCAATCGGAGATGAAGAGGCCGGAAAAAATCATTCCATGTCCAAGATGCAAGAGCATGGAGACCAAATTCTGTTACTTCAACAATTACAATGTTAATCAGCCGAGACATTTCTGCAAGGGTTGCCAGAGGTACTGGACGGCCGGTGGGGCGCTCCGGAACGTGCCCATCGGAGCCGGCCGCCGGAGAGCCAAGCCTCCGCCCAATTGCCGGAGCCTTTCCGGCGAGCTGCCGGAGGATTACGGGCAGCTTTACGATGCTGCTTCTGGGATTATTCATCAGCTTGAGTTGGACGCGGTGGAGGGGTGGCATCTCACGGTGGCGGAGCAGGATTTCGGCCAAGTTTTTCCTCTCAAACGCCAGAAGATTATCGGTCAACACGGTCAAACGTCTTAA 504 53.77 MAEVHSSNANGIKLFGTMITLQTRKIKEEPEKGGGGDQSEMKRPEKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPPPNCRSLSGELPEDYGQLYDAASGIIHQLELDAVEGWHLTVAEQDFGQVFPLKRQKIIGQHGQTS 167
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 2459445 2459948 + Maker00012001 Lcy1g0269 622181
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0269 167 ProSitePatterns Zinc finger Dof-type signature. 50 86 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy1g0269 167 ProSiteProfiles Zinc finger Dof-type profile. 48 102 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy1g0269 167 PANTHER CYCLIC DOF FACTOR 2 28 109 IPR045174 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0006355(InterPro)
Lcy1g0269 167 Pfam Dof domain, zinc finger 46 101 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy1g0269 167 MobiDBLite consensus disorder prediction 24 43 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0269 Lcy-Chr1:2459445 Lcy5g2541 Lcy-Chr5:48173679 6.75E-35 dispersed
Lcy1g0269 Lcy-Chr1:2459445 Lcy5g1831 Lcy-Chr5:41135274 8.15E-58 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19496 None None None None Lcy TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0269 - - - 0.0