Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0269 ATGGCTGAGGTCCACAGTAGCAACGCCAATGGAATTAAGCTCTTTGGCACTATGATCACTTTACAGACCAGAAAAATCAAGGAGGAGCCGGAGAAAGGCGGCGGCGGAGATCAATCGGAGATGAAGAGGCCGGAAAAAATCATTCCATGTCCAAGATGCAAGAGCATGGAGACCAAATTCTGTTACTTCAACAATTACAATGTTAATCAGCCGAGACATTTCTGCAAGGGTTGCCAGAGGTACTGGACGGCCGGTGGGGCGCTCCGGAACGTGCCCATCGGAGCCGGCCGCCGGAGAGCCAAGCCTCCGCCCAATTGCCGGAGCCTTTCCGGCGAGCTGCCGGAGGATTACGGGCAGCTTTACGATGCTGCTTCTGGGATTATTCATCAGCTTGAGTTGGACGCGGTGGAGGGGTGGCATCTCACGGTGGCGGAGCAGGATTTCGGCCAAGTTTTTCCTCTCAAACGCCAGAAGATTATCGGTCAACACGGTCAAACGTCTTAA 504 53.77 MAEVHSSNANGIKLFGTMITLQTRKIKEEPEKGGGGDQSEMKRPEKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPPPNCRSLSGELPEDYGQLYDAASGIIHQLELDAVEGWHLTVAEQDFGQVFPLKRQKIIGQHGQTS 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2459445 2459948 + Maker00012001 Lcy1g0269 622181

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0269 167 ProSitePatterns Zinc finger Dof-type signature. 50 86 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy1g0269 167 ProSiteProfiles Zinc finger Dof-type profile. 48 102 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy1g0269 167 PANTHER CYCLIC DOF FACTOR 2 28 109 IPR045174 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0006355(InterPro)
Lcy1g0269 167 Pfam Dof domain, zinc finger 46 101 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy1g0269 167 MobiDBLite consensus disorder prediction 24 43 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0269 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0269 Lcy-Chr1:2459445 Lcy5g2541 Lcy-Chr5:48173679 6.75E-35 dispersed
Lcy1g0269 Lcy-Chr1:2459445 Lcy5g1831 Lcy-Chr5:41135274 8.15E-58 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy5g1831 . 13 170 C2C2-Dof Transcription Factor Family AT1G29160 52.7 7.7e-43 171.0
Lcy1g0269 . 6 158 C2C2-Dof Transcription Factor Family AT1G29160 52.6 3.2e-41 165.6
Lcy5g1831 . 13 170 C2C2-Dof Transcription Factor Family AT2G34140 53.4 4.4e-43 171.8
Lcy1g0269 . 6 158 C2C2-Dof Transcription Factor Family AT2G34140 50.3 9.4e-38 154.1
Lcy10g1842 . 1 136 C2C2-Dof Transcription Factor Family AT2G37590 67.4 1.4e-37 154.5
Lcy11g0196 . 66 140 C2C2-Dof Transcription Factor Family AT2G37590 90.7 4.1e-37 152.9
Lcy2g0570 . 140 491 C2C2-Dof Transcription Factor Family AT3G47500 53.4 2.4e-88 323.6
Lcy10g0543 . 149 514 C2C2-Dof Transcription Factor Family AT3G47500 50.4 6.7e-75 278.9
Lcy11g0196 . 65 140 C2C2-Dof Transcription Factor Family AT5G02460 90.8 2.6e-38 157.1
Lcy1g1448 . 54 127 C2C2-Dof Transcription Factor Family AT5G02460 87.8 8.4e-37 152.1
Lcy5g0212 . 52 134 C2C2-Dof Transcription Factor Family AT3G55370 81.9 2.7e-37 153.7
Lcy2g0489 . 28 323 C2C2-Dof Transcription Factor Family AT5G60850 54.1 5.8e-46 182.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005702 4 1 1 2 3 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19496 None None None None Lcy TF