Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0290 ATGATTGTGAGAGTGGAACTTATAATCTGGTTTCTTCGGACTGTCCCTTTGTTGACTCAGATGAACGGCATATCTCTTAGTGGTATAAGCACTTCATTTGTGGAAATGGGTTCTGGAGACTGGTTTAAGACAGTAATTCGCTTAAAGAAAGTAAAAACCAGCAGTTCAAAACATGCTAAGCTTTTTGCTTTGATATGGAAACCATCATCTCAGGAGAAATCAAATGCTTTGAAATCAAATAATTTGCAAAAAGATTCCTCGAAGTTAAAAAATGGTGGTACTAATGGAAGCAGAAAATCTCTGGGGATGCCAATTGAAGATGTAGCTGCAGTTCGGATTCAGACAGCATATCGAGCATATCGTGCCAGGAAAAATTTACGTCGATTGAAAGGAACTGTGAGACTGCAGAATCTGACTCAAGGAAATTCTGTTAAAAGGCATGCTACATCTACCTTAGGCTATCTTCATTCATGGAGCAATATACAGACTCAAATTAGGACTCGTCGACTTTGTATGGTGACAGAAGGACGACTAAGACAAAAGAGATTAGAGAATCAACGAAAACTTGAGGCTAAGCTTCATGATATAGAGGTGGAGTGGTCTGGCGGTGCAGACACCATGGAGGAGATTCTTTCAAGGATACACGAGAGAGAAGAAGCAGCTGTTAAGCGCGAGCGTGCTATGGCATATGCATTCTCACATCAGTGGAGAGCAAACTCCAGTGAGATGTATGGGTTGGGTAAAGATGAACTTGGTAAAGCAGATTGGGGTTGGAGCTGGAAAGAACGATGGATAGCCGCTCGTCCATGGGAAAGCCGTGTACCATCTCAATTAGTTAGTCCGAAGAAATCGACAATTAGGCAATCAAGCAAAGTCAGTAAGAAAAACTCACCATCTCCAAAAGCACGAGTTTTGGTAAAACCTCCTTCCCCAAATGGCAAATCAACTCCCAAGGCTCGGAGATTATCCTATCCAGCAACCGAGAAAACCGAGAAACTGGCCACAGAAGAAAAAAGCGTCAAGAAAAGTGTTAAAGATGATGAAGGAAACACTAAGAAAGAAGAAACAACCATATTACAACACCTGTCGTCCTCCGCGACCCATGTTCATGCAGATGAAATAAGTGGACAATGGGCGGCTAATTCAGTTGCCTTTGAAAATCCAAGCGGCCAGAATCAAACTACTCATCGTAAGGTAAGGCTATCGAAACCATCGCTCTACACAACTCGGGTTTCAAAACTCATGGAATCTTCTGCCGACACTTCTGGGTGCTCGCGAAGGCTAGTCGCTTTGGCACAGCAACTCCGCCTTTACAAACCGCCGCCATTGTTGGACGACATAGAGGAGCCAAGCAGTGAGGAGAGCAATGGAAAGGTTGTTTCTCAAGTGGGTTTCCCTGAATCGGCCACCCCAATTTCTCGAGACCCGGAGAGATTCAGACCCAAGAGAGCGGCTGTGTTGATTTGCCTTTTTGAAGGGAATGATGGCGATCTGCGGGTCATTCTCACCAAACGATCTTCGAGGTTGTCTACTCACTCGGGCGAAGTTGCATTGCCTGGAGGAAAAGCAGAGGAAGGAGATGAGGACGACGGGGCAACTGCGACGAGAGAAGCGAAGGAGGAGATTGGTTTGGATCCTTCGCTTGTAGATGTTGTAGCAGTTCTTGAGCCATTCTTGTCTAAGCATCTCTTAAGAGTGGTTCCTGTTATCGGCATTATGAATGAAAGAACTGCATTCAGTCCCAGGCCGAATCCTGCTGAAGTGGAAGAAGTATTTGATGCTCCACTTGATATGTTTATTAAGGATGAAAATCGGAGATCGGAGGAAAGAGAGTGGATGGGATGCAAATACATTGTTCATTTCTTTGACTATGAAACCGAGAATAAGAAGTATGTGATATGGGGTTTAACTGCTGGGATCTTGATAAGGGCTGCAACGATAGTACTCCAAAGTTCACCACCTTTTCTGGAGCAAAACCCTATCTTCAAGGTTCCAAGAGTGGTAGCTAAAGATACTATTATGTCTTAG 2028 44.13 MIVRVELIIWFLRTVPLLTQMNGISLSGISTSFVEMGSGDWFKTVIRLKKVKTSSSKHAKLFALIWKPSSQEKSNALKSNNLQKDSSKLKNGGTNGSRKSLGMPIEDVAAVRIQTAYRAYRARKNLRRLKGTVRLQNLTQGNSVKRHATSTLGYLHSWSNIQTQIRTRRLCMVTEGRLRQKRLENQRKLEAKLHDIEVEWSGGADTMEEILSRIHEREEAAVKRERAMAYAFSHQWRANSSEMYGLGKDELGKADWGWSWKERWIAARPWESRVPSQLVSPKKSTIRQSSKVSKKNSPSPKARVLVKPPSPNGKSTPKARRLSYPATEKTEKLATEEKSVKKSVKDDEGNTKKEETTILQHLSSSATHVHADEISGQWAANSVAFENPSGQNQTTHRKVRLSKPSLYTTRVSKLMESSADTSGCSRRLVALAQQLRLYKPPPLLDDIEEPSSEESNGKVVSQVGFPESATPISRDPERFRPKRAAVLICLFEGNDGDLRVILTKRSSRLSTHSGEVALPGGKAEEGDEDDGATATREAKEEIGLDPSLVDVVAVLEPFLSKHLLRVVPVIGIMNERTAFSPRPNPAEVEEVFDAPLDMFIKDENRRSEEREWMGCKYIVHFFDYETENKKYVIWGLTAGILIRAATIVLQSSPPFLEQNPIFKVPRVVAKDTIMS 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2611003 2618296 - Maker00012094 Lcy1g0290 622202

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0290 675 MobiDBLite consensus disorder prediction 75 101 - -
Lcy1g0290 675 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 467 646 - -
Lcy1g0290 675 PANTHER NUDIX HYDROLASE 425 664 IPR045121 GO:0010945(InterPro)|GO:0015938(PANTHER)
Lcy1g0290 675 Pfam NUDIX domain 482 596 IPR000086 -
Lcy1g0290 675 ProSiteProfiles Nudix hydrolase domain profile. 481 637 IPR000086 -
Lcy1g0290 675 MobiDBLite consensus disorder prediction 521 536 - -
Lcy1g0290 675 FunFam Nudix hydrolase 11 463 646 - -
Lcy1g0290 675 SUPERFAMILY Nudix 479 641 IPR015797 -
Lcy1g0290 675 MobiDBLite consensus disorder prediction 324 353 - -
Lcy1g0290 675 MobiDBLite consensus disorder prediction 75 98 - -
Lcy1g0290 675 ProSiteProfiles IQ motif profile. 106 134 - -
Lcy1g0290 675 MobiDBLite consensus disorder prediction 511 536 - -
Lcy1g0290 675 MobiDBLite consensus disorder prediction 277 297 - -
Lcy1g0290 675 MobiDBLite consensus disorder prediction 275 353 - -
Lcy1g0290 675 CDD CoAse 482 642 IPR045121 GO:0010945(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0290 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0290 Lcy-Chr1:2611003 Lcy2g1354 Lcy-Chr2:15361572 7.79E-33 dispersed
Lcy6g0627 Lcy-Chr6:5971289 Lcy1g0290 Lcy-Chr1:2611003 4.23E-67 transposed
Lcy1g0290 Lcy-Chr1:2611003 Lcy5g1843 Lcy-Chr5:41275479 9.99E-72 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy10g1784 . 30 510 IQD Protein Family AT3G52290 54.2 2.7e-102 369.8
Lcy2g1354 . 355 748 IQD Protein Family AT3G22190 58.1 3.0e-93 339.7
Lcy9g1966 . 1 437 IQD Protein Family AT2G26180 60.1 2.0e-118 423.3
Lcy1g0290 . 36 325 IQD Protein Family AT2G33990 51.0 5.3e-64 241.9
Lcy6g0627 . 84 271 IQD Protein Family AT2G33990 57.1 2.1e-52 203.4
Lcy1g0290 . 107 299 IQD Protein Family AT3G15050 57.5 1.8e-56 216.9
Lcy6g0627 . 91 278 IQD Protein Family AT3G15050 60.9 3.4e-55 212.6
Lcy10g1012 . 95 442 IQD Protein Family AT5G13460 52.5 1.7e-75 280.8
Lcy11g2121 . 1 534 IQD Protein Family AT4G00820 54.2 1.9e-129 460.3
Lcy4g1146 . 90 498 IQD Protein Family AT4G00820 57.1 1.7e-106 384.0
Lcy11g2121 . 1 534 IQD Protein Family AT1G01110 50.9 1.2e-123 441.0
Lcy3g2162 . 1 395 IQD Protein Family AT3G16490 52.1 1.2e-72 271.2
Lcy2g0871 . 1 395 IQD Protein Family AT3G16490 51.6 3.1e-68 256.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010466 2 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 2 2 1 32