Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0290 ATGATTGTGAGAGTGGAACTTATAATCTGGTTTCTTCGGACTGTCCCTTTGTTGACTCAGATGAACGGCATATCTCTTAGTGGTATAAGCACTTCATTTGTGGAAATGGGTTCTGGAGACTGGTTTAAGACAGTAATTCGCTTAAAGAAAGTAAAAACCAGCAGTTCAAAACATGCTAAGCTTTTTGCTTTGATATGGAAACCATCATCTCAGGAGAAATCAAATGCTTTGAAATCAAATAATTTGCAAAAAGATTCCTCGAAGTTAAAAAATGGTGGTACTAATGGAAGCAGAAAATCTCTGGGGATGCCAATTGAAGATGTAGCTGCAGTTCGGATTCAGACAGCATATCGAGCATATCGTGCCAGGAAAAATTTACGTCGATTGAAAGGAACTGTGAGACTGCAGAATCTGACTCAAGGAAATTCTGTTAAAAGGCATGCTACATCTACCTTAGGCTATCTTCATTCATGGAGCAATATACAGACTCAAATTAGGACTCGTCGACTTTGTATGGTGACAGAAGGACGACTAAGACAAAAGAGATTAGAGAATCAACGAAAACTTGAGGCTAAGCTTCATGATATAGAGGTGGAGTGGTCTGGCGGTGCAGACACCATGGAGGAGATTCTTTCAAGGATACACGAGAGAGAAGAAGCAGCTGTTAAGCGCGAGCGTGCTATGGCATATGCATTCTCACATCAGTGGAGAGCAAACTCCAGTGAGATGTATGGGTTGGGTAAAGATGAACTTGGTAAAGCAGATTGGGGTTGGAGCTGGAAAGAACGATGGATAGCCGCTCGTCCATGGGAAAGCCGTGTACCATCTCAATTAGTTAGTCCGAAGAAATCGACAATTAGGCAATCAAGCAAAGTCAGTAAGAAAAACTCACCATCTCCAAAAGCACGAGTTTTGGTAAAACCTCCTTCCCCAAATGGCAAATCAACTCCCAAGGCTCGGAGATTATCCTATCCAGCAACCGAGAAAACCGAGAAACTGGCCACAGAAGAAAAAAGCGTCAAGAAAAGTGTTAAAGATGATGAAGGAAACACTAAGAAAGAAGAAACAACCATATTACAACACCTGTCGTCCTCCGCGACCCATGTTCATGCAGATGAAATAAGTGGACAATGGGCGGCTAATTCAGTTGCCTTTGAAAATCCAAGCGGCCAGAATCAAACTACTCATCGTAAGGTAAGGCTATCGAAACCATCGCTCTACACAACTCGGGTTTCAAAACTCATGGAATCTTCTGCCGACACTTCTGGGTGCTCGCGAAGGCTAGTCGCTTTGGCACAGCAACTCCGCCTTTACAAACCGCCGCCATTGTTGGACGACATAGAGGAGCCAAGCAGTGAGGAGAGCAATGGAAAGGTTGTTTCTCAAGTGGGTTTCCCTGAATCGGCCACCCCAATTTCTCGAGACCCGGAGAGATTCAGACCCAAGAGAGCGGCTGTGTTGATTTGCCTTTTTGAAGGGAATGATGGCGATCTGCGGGTCATTCTCACCAAACGATCTTCGAGGTTGTCTACTCACTCGGGCGAAGTTGCATTGCCTGGAGGAAAAGCAGAGGAAGGAGATGAGGACGACGGGGCAACTGCGACGAGAGAAGCGAAGGAGGAGATTGGTTTGGATCCTTCGCTTGTAGATGTTGTAGCAGTTCTTGAGCCATTCTTGTCTAAGCATCTCTTAAGAGTGGTTCCTGTTATCGGCATTATGAATGAAAGAACTGCATTCAGTCCCAGGCCGAATCCTGCTGAAGTGGAAGAAGTATTTGATGCTCCACTTGATATGTTTATTAAGGATGAAAATCGGAGATCGGAGGAAAGAGAGTGGATGGGATGCAAATACATTGTTCATTTCTTTGACTATGAAACCGAGAATAAGAAGTATGTGATATGGGGTTTAACTGCTGGGATCTTGATAAGGGCTGCAACGATAGTACTCCAAAGTTCACCACCTTTTCTGGAGCAAAACCCTATCTTCAAGGTTCCAAGAGTGGTAGCTAAAGATACTATTATGTCTTAG 2028 44.13 MIVRVELIIWFLRTVPLLTQMNGISLSGISTSFVEMGSGDWFKTVIRLKKVKTSSSKHAKLFALIWKPSSQEKSNALKSNNLQKDSSKLKNGGTNGSRKSLGMPIEDVAAVRIQTAYRAYRARKNLRRLKGTVRLQNLTQGNSVKRHATSTLGYLHSWSNIQTQIRTRRLCMVTEGRLRQKRLENQRKLEAKLHDIEVEWSGGADTMEEILSRIHEREEAAVKRERAMAYAFSHQWRANSSEMYGLGKDELGKADWGWSWKERWIAARPWESRVPSQLVSPKKSTIRQSSKVSKKNSPSPKARVLVKPPSPNGKSTPKARRLSYPATEKTEKLATEEKSVKKSVKDDEGNTKKEETTILQHLSSSATHVHADEISGQWAANSVAFENPSGQNQTTHRKVRLSKPSLYTTRVSKLMESSADTSGCSRRLVALAQQLRLYKPPPLLDDIEEPSSEESNGKVVSQVGFPESATPISRDPERFRPKRAAVLICLFEGNDGDLRVILTKRSSRLSTHSGEVALPGGKAEEGDEDDGATATREAKEEIGLDPSLVDVVAVLEPFLSKHLLRVVPVIGIMNERTAFSPRPNPAEVEEVFDAPLDMFIKDENRRSEEREWMGCKYIVHFFDYETENKKYVIWGLTAGILIRAATIVLQSSPPFLEQNPIFKVPRVVAKDTIMS 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2611003 2618296 - Maker00012094 Lcy1g0290 622202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0290 675 MobiDBLite consensus disorder prediction 75 101 - -
Lcy1g0290 675 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 467 646 - -
Lcy1g0290 675 PANTHER NUDIX HYDROLASE 425 664 IPR045121 GO:0010945(InterPro)|GO:0015938(PANTHER)
Lcy1g0290 675 Pfam NUDIX domain 482 596 IPR000086 -
Lcy1g0290 675 ProSiteProfiles Nudix hydrolase domain profile. 481 637 IPR000086 -
Lcy1g0290 675 MobiDBLite consensus disorder prediction 521 536 - -
Lcy1g0290 675 FunFam Nudix hydrolase 11 463 646 - -
Lcy1g0290 675 SUPERFAMILY Nudix 479 641 IPR015797 -
Lcy1g0290 675 MobiDBLite consensus disorder prediction 324 353 - -
Lcy1g0290 675 MobiDBLite consensus disorder prediction 75 98 - -
Lcy1g0290 675 ProSiteProfiles IQ motif profile. 106 134 - -
Lcy1g0290 675 MobiDBLite consensus disorder prediction 511 536 - -
Lcy1g0290 675 MobiDBLite consensus disorder prediction 277 297 - -
Lcy1g0290 675 MobiDBLite consensus disorder prediction 275 353 - -
Lcy1g0290 675 CDD CoAse 482 642 IPR045121 GO:0010945(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0290 Lcy-Chr1:2611003 Lcy2g1354 Lcy-Chr2:15361572 7.79E-33 dispersed
Lcy6g0627 Lcy-Chr6:5971289 Lcy1g0290 Lcy-Chr1:2611003 4.23E-67 transposed
Lcy1g0290 Lcy-Chr1:2611003 Lcy5g1843 Lcy-Chr5:41275479 9.99E-72 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0290 - - - 0.0