Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy1g0290 | ATGATTGTGAGAGTGGAACTTATAATCTGGTTTCTTCGGACTGTCCCTTTGTTGACTCAGATGAACGGCATATCTCTTAGTGGTATAAGCACTTCATTTGTGGAAATGGGTTCTGGAGACTGGTTTAAGACAGTAATTCGCTTAAAGAAAGTAAAAACCAGCAGTTCAAAACATGCTAAGCTTTTTGCTTTGATATGGAAACCATCATCTCAGGAGAAATCAAATGCTTTGAAATCAAATAATTTGCAAAAAGATTCCTCGAAGTTAAAAAATGGTGGTACTAATGGAAGCAGAAAATCTCTGGGGATGCCAATTGAAGATGTAGCTGCAGTTCGGATTCAGACAGCATATCGAGCATATCGTGCCAGGAAAAATTTACGTCGATTGAAAGGAACTGTGAGACTGCAGAATCTGACTCAAGGAAATTCTGTTAAAAGGCATGCTACATCTACCTTAGGCTATCTTCATTCATGGAGCAATATACAGACTCAAATTAGGACTCGTCGACTTTGTATGGTGACAGAAGGACGACTAAGACAAAAGAGATTAGAGAATCAACGAAAACTTGAGGCTAAGCTTCATGATATAGAGGTGGAGTGGTCTGGCGGTGCAGACACCATGGAGGAGATTCTTTCAAGGATACACGAGAGAGAAGAAGCAGCTGTTAAGCGCGAGCGTGCTATGGCATATGCATTCTCACATCAGTGGAGAGCAAACTCCAGTGAGATGTATGGGTTGGGTAAAGATGAACTTGGTAAAGCAGATTGGGGTTGGAGCTGGAAAGAACGATGGATAGCCGCTCGTCCATGGGAAAGCCGTGTACCATCTCAATTAGTTAGTCCGAAGAAATCGACAATTAGGCAATCAAGCAAAGTCAGTAAGAAAAACTCACCATCTCCAAAAGCACGAGTTTTGGTAAAACCTCCTTCCCCAAATGGCAAATCAACTCCCAAGGCTCGGAGATTATCCTATCCAGCAACCGAGAAAACCGAGAAACTGGCCACAGAAGAAAAAAGCGTCAAGAAAAGTGTTAAAGATGATGAAGGAAACACTAAGAAAGAAGAAACAACCATATTACAACACCTGTCGTCCTCCGCGACCCATGTTCATGCAGATGAAATAAGTGGACAATGGGCGGCTAATTCAGTTGCCTTTGAAAATCCAAGCGGCCAGAATCAAACTACTCATCGTAAGGTAAGGCTATCGAAACCATCGCTCTACACAACTCGGGTTTCAAAACTCATGGAATCTTCTGCCGACACTTCTGGGTGCTCGCGAAGGCTAGTCGCTTTGGCACAGCAACTCCGCCTTTACAAACCGCCGCCATTGTTGGACGACATAGAGGAGCCAAGCAGTGAGGAGAGCAATGGAAAGGTTGTTTCTCAAGTGGGTTTCCCTGAATCGGCCACCCCAATTTCTCGAGACCCGGAGAGATTCAGACCCAAGAGAGCGGCTGTGTTGATTTGCCTTTTTGAAGGGAATGATGGCGATCTGCGGGTCATTCTCACCAAACGATCTTCGAGGTTGTCTACTCACTCGGGCGAAGTTGCATTGCCTGGAGGAAAAGCAGAGGAAGGAGATGAGGACGACGGGGCAACTGCGACGAGAGAAGCGAAGGAGGAGATTGGTTTGGATCCTTCGCTTGTAGATGTTGTAGCAGTTCTTGAGCCATTCTTGTCTAAGCATCTCTTAAGAGTGGTTCCTGTTATCGGCATTATGAATGAAAGAACTGCATTCAGTCCCAGGCCGAATCCTGCTGAAGTGGAAGAAGTATTTGATGCTCCACTTGATATGTTTATTAAGGATGAAAATCGGAGATCGGAGGAAAGAGAGTGGATGGGATGCAAATACATTGTTCATTTCTTTGACTATGAAACCGAGAATAAGAAGTATGTGATATGGGGTTTAACTGCTGGGATCTTGATAAGGGCTGCAACGATAGTACTCCAAAGTTCACCACCTTTTCTGGAGCAAAACCCTATCTTCAAGGTTCCAAGAGTGGTAGCTAAAGATACTATTATGTCTTAG | 2028 | 44.13 | MIVRVELIIWFLRTVPLLTQMNGISLSGISTSFVEMGSGDWFKTVIRLKKVKTSSSKHAKLFALIWKPSSQEKSNALKSNNLQKDSSKLKNGGTNGSRKSLGMPIEDVAAVRIQTAYRAYRARKNLRRLKGTVRLQNLTQGNSVKRHATSTLGYLHSWSNIQTQIRTRRLCMVTEGRLRQKRLENQRKLEAKLHDIEVEWSGGADTMEEILSRIHEREEAAVKRERAMAYAFSHQWRANSSEMYGLGKDELGKADWGWSWKERWIAARPWESRVPSQLVSPKKSTIRQSSKVSKKNSPSPKARVLVKPPSPNGKSTPKARRLSYPATEKTEKLATEEKSVKKSVKDDEGNTKKEETTILQHLSSSATHVHADEISGQWAANSVAFENPSGQNQTTHRKVRLSKPSLYTTRVSKLMESSADTSGCSRRLVALAQQLRLYKPPPLLDDIEEPSSEESNGKVVSQVGFPESATPISRDPERFRPKRAAVLICLFEGNDGDLRVILTKRSSRLSTHSGEVALPGGKAEEGDEDDGATATREAKEEIGLDPSLVDVVAVLEPFLSKHLLRVVPVIGIMNERTAFSPRPNPAEVEEVFDAPLDMFIKDENRRSEEREWMGCKYIVHFFDYETENKKYVIWGLTAGILIRAATIVLQSSPPFLEQNPIFKVPRVVAKDTIMS | 675 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 2611003 | 2618296 | - | Maker00012094 | Lcy1g0290 | 622202 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy1g0290 | 675 | MobiDBLite | consensus disorder prediction | 75 | 101 | - | - | |
Lcy1g0290 | 675 | Gene3D | Nucleoside Triphosphate Pyrophosphohydrolase | 467 | 646 | - | - | |
Lcy1g0290 | 675 | PANTHER | NUDIX HYDROLASE | 425 | 664 | IPR045121 | GO:0010945(InterPro)|GO:0015938(PANTHER) | |
Lcy1g0290 | 675 | Pfam | NUDIX domain | 482 | 596 | IPR000086 | - | |
Lcy1g0290 | 675 | ProSiteProfiles | Nudix hydrolase domain profile. | 481 | 637 | IPR000086 | - | |
Lcy1g0290 | 675 | MobiDBLite | consensus disorder prediction | 521 | 536 | - | - | |
Lcy1g0290 | 675 | FunFam | Nudix hydrolase 11 | 463 | 646 | - | - | |
Lcy1g0290 | 675 | SUPERFAMILY | Nudix | 479 | 641 | IPR015797 | - | |
Lcy1g0290 | 675 | MobiDBLite | consensus disorder prediction | 324 | 353 | - | - | |
Lcy1g0290 | 675 | MobiDBLite | consensus disorder prediction | 75 | 98 | - | - | |
Lcy1g0290 | 675 | ProSiteProfiles | IQ motif profile. | 106 | 134 | - | - | |
Lcy1g0290 | 675 | MobiDBLite | consensus disorder prediction | 511 | 536 | - | - | |
Lcy1g0290 | 675 | MobiDBLite | consensus disorder prediction | 277 | 297 | - | - | |
Lcy1g0290 | 675 | MobiDBLite | consensus disorder prediction | 275 | 353 | - | - | |
Lcy1g0290 | 675 | CDD | CoAse | 482 | 642 | IPR045121 | GO:0010945(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy1g0290 | Lcy-Chr1:2611003 | Lcy2g1354 | Lcy-Chr2:15361572 | 7.79E-33 | dispersed | |
Lcy6g0627 | Lcy-Chr6:5971289 | Lcy1g0290 | Lcy-Chr1:2611003 | 4.23E-67 | transposed | |
Lcy1g0290 | Lcy-Chr1:2611003 | Lcy5g1843 | Lcy-Chr5:41275479 | 9.99E-72 | wgd |
Pathway information
