Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0307 ATGGGTGCTCTCATCGATCTCAATACCACTGAAGAAGATGATGCCCCCTCTTCTGCTGGCTCCTCTGTTTCTTCTTCCTCCGCTTCTGCTTTGACCTCCTCGCCTTCGCCTTCTGTTACGTCCTCAATTTGCTTGGAGCTATGGCATGCCTGTGCTGGCCCTCTTACGTCTTTGCCGAAGAAAGGGAGCTTGGTTGTGTATTTTCCGCAGGGTCACTTGGAGCAGATGCAAGAATTTCCTGCCACGGCGGCCTATGATCTCCCTCCCCACATCCTCTGTCGCGTCATTGATGTCCAGCTTCACGCCGAGGCAGGAAGTGACGAGGTTTATGCTCAGGTTTCATTGTTTCCTGAAAACGAGCAAATGGAGCACAAGATGCAGGAGGAGATGAACAATGACAGTGAGGAGGAGGATGTTGAAGGTGGCGAGAAGACCACAACTCCCCACATGTTCTGCAAGACCCTTACTGCCTCAGACACTAGTACTCATGGAGGCTTCTCCGTTCCCAGACGAGCTGCCGAGGATTGCTTCCCACCTTTGGATTATAATCAACAGAGGCCTTCACAAGAGCTCGTTGCAAAGGATCTCCTTGGGCTGAAATGGAAGTTCAGGCACATATATCGTGGGCAGCCTAGAAGGCATTTGCTAACCACCGGATGGAGTGCATTTGTGAACAAGAAAAGGCTTGTTTCGGGTGATGCAGTGCTTTTTCTTAGGGGCAATGACGGGGAATTAAGGCTGGGAATACGAAGAGCTGCACAACTTAAAAGTGGTTCTGCCTTTTCTAATATATGCAGTCAGCAGCTCAACTCTAGTAGTATCGTGGATGTGGTTAATGCTATATCTACAAAAAGTTCCTTTAGCGTATACTACAATCCCAGGGCTACTTCTTCGCAGTTTGTCTTGCCTTTTCACAAGTTCTTGAAGAGCATTAACCATTCTTTCTCTGTTGGAATGAGGTTCAGGCTGAGTTTTGAAACCGAAGATGCTGCAGATCGAAGATATACTGGACATATAACTGGAGTTGGTGATGTAGATCCTATCAGATGGCCAAGATCAAGGTGGAGGTCCCTTATGAATTATTTAGGTCCTTCAGAGAGTCTTGGCGTTGGATATTCTGTGAGGTGGGACGATGGTGAAACTAACAGGCATGGCAGGGTTTCCCCGTGGGAGATTGAGCCCTCTGGTTCGGTTTCTGTGTCTAGCAACTTGGTTCCACCTGGTCTGAAGAGGACCAGGGTTGGACTCTCTTCCACAAAACTAGAGTTTCCAGTTCCAAATGGGATTGGAGCATCAGACTTTGGGGAATCTTTAAGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTTTAGGTTACAGTACTCCCATTGATGGTGACGACAACACTCGTCATCCACCCGAAAAGAGGAGAATGTTTCCTGGTTTACATGGTTCTGGGATAGCTCTGATGAGAAATGGTCCAGGAAACCCACTTATCAACTCTGAAACTTCCTCCCGGGGTATCGTGTTTGATGAATCCTTCCAATTCCATAAGGTCTTGCAAGGTCAAGAAATATTTCCAAGTCCGTTTTATGGTAGGGCCATTGCCACCAATGAAGTTAAGGCAAGTGGTGGTTGCGGTCCTGTTGACGGTGTTCGATTGTCTAGGTCCAAAGATGGATGGCCCATGACAATGCAGTGTGAAAATTTCCTCACCCGGTCTTCCATTCCTTCTGTACAAGTCTCATCACCATCTTCTGTATTCATGTTTCAGCAGTCAATGGTTCCTGTTCAAAGCTTTAATTCACATAACCGTGGCAATTTCGCAGAACAGAGGGTTATGAACAAAAGTACATCCCATAATTCTGGGACAGCATTTATGACTGACCATAGCTTGAATACCGAAGTCCCACAAGGAATGCGTCCCACTTCAGTGGGTGAGCAAAATCAGCTCGGCCTATCAGATCCTTCTACAACAGCATCAGCGTTTACAGGCAGTAAAGATCTGTCCTCAACCTGCAAGGCTGGCTGTAGGTTGTTCGGTTTTTCATTGACAGAGGAAAAGAATGTTGGGAACACAGATCAGGCTTCTCCAGCAACAACTCCAATTAATGCAGGAACAACCACTGTTTTGTCCAATATTGGAATACAATGTCCATTGAAGTCTCCACTGATGAGCAAGGTGGTTGGAAGCAACTGTACCAAAGGGGCTTTCCAGTACAACTTTGCAAATTACAGTACCTACTACTGA 2229 46.75 MGALIDLNTTEEDDAPSSAGSSVSSSSASALTSSPSPSVTSSICLELWHACAGPLTSLPKKGSLVVYFPQGHLEQMQEFPATAAYDLPPHILCRVIDVQLHAEAGSDEVYAQVSLFPENEQMEHKMQEEMNNDSEEEDVEGGEKTTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYNQQRPSQELVAKDLLGLKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFLRGNDGELRLGIRRAAQLKSGSAFSNICSQQLNSSSIVDVVNAISTKSSFSVYYNPRATSSQFVLPFHKFLKSINHSFSVGMRFRLSFETEDAADRRYTGHITGVGDVDPIRWPRSRWRSLMNYLGPSESLGVGYSVRWDDGETNRHGRVSPWEIEPSGSVSVSSNLVPPGLKRTRVGLSSTKLEFPVPNGIGASDFGESLRFQKVLQGQEILGYSTPIDGDDNTRHPPEKRRMFPGLHGSGIALMRNGPGNPLINSETSSRGIVFDESFQFHKVLQGQEIFPSPFYGRAIATNEVKASGGCGPVDGVRLSRSKDGWPMTMQCENFLTRSSIPSVQVSSPSSVFMFQQSMVPVQSFNSHNRGNFAEQRVMNKSTSHNSGTAFMTDHSLNTEVPQGMRPTSVGEQNQLGLSDPSTTASAFTGSKDLSSTCKAGCRLFGFSLTEEKNVGNTDQASPATTPINAGTTTVLSNIGIQCPLKSPLMSKVVGSNCTKGAFQYNFANYSTYY 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2729074 2734498 + Maker00011775 Lcy1g0307 622219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0307 742 MobiDBLite consensus disorder prediction 1 36 - -
Lcy1g0307 742 SUPERFAMILY DNA-binding pseudobarrel domain 146 260 IPR015300 -
Lcy1g0307 742 Gene3D - 314 402 - -
Lcy1g0307 742 Pfam Auxin response factor 277 358 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lcy1g0307 742 ProSiteProfiles B3 DNA-binding domain profile. 151 253 IPR003340 GO:0003677(InterPro)
Lcy1g0307 742 SMART B3_2 151 253 IPR003340 GO:0003677(InterPro)
Lcy1g0307 742 FunFam Auxin response factor 314 399 - -
Lcy1g0307 742 Gene3D - 149 253 IPR015300 -
Lcy1g0307 742 Pfam B3 DNA binding domain 151 252 IPR003340 GO:0003677(InterPro)
Lcy1g0307 742 MobiDBLite consensus disorder prediction 11 36 - -
Lcy1g0307 742 CDD B3_DNA 149 251 IPR003340 GO:0003677(InterPro)
Lcy1g0307 742 FunFam Auxin response factor 149 253 - -
Lcy1g0307 742 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 42 690 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0307 Lcy-Chr1:2729074 Lcy8g1889 Lcy-Chr8:45166309 1.33E-111 dispersed
Lcy1g0307 Lcy-Chr1:2729074 Lcy4g0845 Lcy-Chr4:11328680 5.26E-105 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19501 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0307 K14486 - csv:101220018 1290.79