Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0315 ATGTCTCTGTTTCTCTTCCTCTTCCTCGGCTTCCCTCTGTTTTCCCTCGCCCTCAACGAAGAGAGTCAAGTTCTCCTGTCCTTAAAGCGCTCCCTCGAGGATCGTCGCAATATCCTCTCCTCCTGGAACGACAGGGACGCTAATCCCTGTTCATGGTACGGCATCACCTGCGACAACTATCGTCATGTTATTTCCATCGAGCTCCCCAGCTCCGGTATTACTGCCCCTTTCCCTATTCATCTCTGTAGGCTTCGCCATTTACTCTACATTTCTCTTTACAATAACACCTTACATTCCCTTCTTCCGGAGGACATCGCCAATTGTACCCATCTCGAGTATCTTGACGTTGGCCAAAATCTTCTCACCGGTCCTCTCCCTTCCTCCCTTGCTGATTTGCCCAATCTCCGTTACTTGGACTTGTCTGGCAACAATTTCTCCGGCGAAATACCACAGAGCTTCGCTCGGCTACCGAGCCTTGAGGTGTTTTCCCTTATTTTTAATTTTGTTGGGGGTCCGATTCCCCCGTTTCTTGGGAACGTTAGTACTCTTAGGATGTTGAATCTGTCTTACAACCCCTTTACGCCCGGAAGAATCCCACCGGAGCTGGGTAACCTGGAGAATCTTGAGGTTCTTTGGTTGACGAATTGTAACTTAGAGGGGGAGATTCCTGACTCGCTGGGTCGGCTCAAGCACCTCGTTCTTCTGGATTTGAGCATGAACATGCTTACTGGGTCCTTCCCGCCGGCGCTGACGGAGTTAAGTAGCGTGTCCCAGATTGAGTTGTTTAACAATTCGTTGTCTGGCGTGTTACCAAATGGGCTTTCGAAACTCAAGTTCTTGCGGATGTTAGACGTGTCGATGAACCACTTTGTTGGCCCAATTCCTGGCGACTTGTTTGACTTGCCGCTCGAAAGTCTTAATGTGTTTGAGAATCGGTTAGAGGGTAGCTTGCCCGAAAGCATGGGGAACTCGAGGACTTTGGCGGAGATTAAGCTATTTAGGAACAGATTCACGGGGGAGTTACCGAGACATTTGGGAAAATATTCGCCTCTGAAAGCGTTGGACATTTCAGACAACTTCTTTACGGGCAGTCTTCCCGAGGGCTTGTGTAAGAATGGGAAATTAGTAGAGGTAATGATGCTCAACAACAGATTTTCCGGCGAACTCCCGTCGAGTCTCGGTAATTGCCACTCTCTTTCCAGGTTCCGATTAGCGAACAACTATTTTACGGGTCATGTGCCAGAAAATTTATGGGGACTTCCGAATGTTGCTCTTCTGGAATTTACAAACAACACCTTCTCTGGTCCAATCTCAAAGAAAATAGGCAATGCCAAGGAGCTGAGTTTGCTTCTTATTTCTCATAACAATTTCTCAGGAACAATTCCGGAGGAGATTGGTTCTTTGCAGAATCTGGTAGATTTTTCCGGTGACCATAACATGTTCGTAGGACATTTCCCTGAGAGCCTTACGAAAATGGAACGGCTTGTCAAGTTGGATCTTCAAAACAACATGCTTTCCGGGTTGTTAACCAGCAAGTTTGAGGCGTGGAGGAGGCTCAATGAGCTCAATCTGGCCAATAATAACTTCTCTGGGGAAATTCCTCCGGAAATTGCTAGCTTGTCAGTGCTTAATTACCTCGATCTTTCAAGTAACCATTTTTCTGGGGAAATCCCAAATGGGTTACAGAATTTGAACCTCAACGTTCTGAATCTATCATTCAATCACTTGACTGGGACGCTTCCTTCCTATTTCGAGGGATCAGGGTACAAAAACAGCTTTCTGGGTAATCCTGATTTGTGTAGGGAGGAGAATGGTGCGTGTAAACTAATTCATTCTCAAAGAAAAGAAGGAGGAGGCATTTGGGTTCTACGAGCCATCTTTATACTTGCAGTTCTAATTTTCTGTGTGGGAGTGGTTTTGTTCCACATCAAGTACAAGAAATTCCTCAAGGCAAGAAGTCTCAACATCAAATCAAAGTGGACGATGATATCGTTCCACAAGCTCTCTTTCGATGAGGATGAGATTGTGGGTTCCCTAGATGAAGACAATGTGGTAGGCAGTGGAGGCTCTGGCCAAGTTTACAAGGTTGCTCTTGCCAATGGCGAAATCATTGCAGTTAAGAAACTCTGGGCCGAGGTGCCCAAGGACCGCAAGAGCATCGATCTCGAGAACAACTGGGCTGAAGATAATGCTTTTGATGCTGAAGTGAAGACTTTAGGTAAAATCAGGCATAAAAACATAGTCAAACTATGGTGTTGTTGTACTAATGGAGACAGCAGGCTTTTGGTTTATGAATACATGCCTAATGGGAGCTTAGGTGATATGCTTCATGGCAGTAAAAGTGAGTTATTGGATTGGTCAACAAGATACAAGATTGCCTTGGATGCTGCTGAGGGGCTTTCTTATCTTCATCATGATTGTGTTCCTCCAATTGTACACAGAGATGTCAAGTCCAATAACATCTTGTTGGATGCCGATTTCGGAGCCCGGATAGCAGATTTTGGAGTAGCCATGGCCGTCGATATGTCGGCAAATAAATCCATGTCAGTGATTGCTGGTTCTTGTGGTTATATTGCCCCAGAGTATGCTTATACATTGAAAGTGAACGAGAAGACCGACATCTTTAGCTACGGGATGGTTGTCCTTGAATTGATAACCGGGAAGTGCCCGACCGATCCCGAGTTTGAAGAAAACGCTCTGGTGAAATGGGTATGCACCACGTTAGAACAGGAAGGCATCAACCATGTTCTAGACCCGAAATTGAATACCTGTCACCATGATGAAATGTTGAAGGTCCTCAACATTGGCCTCCTATGCAGCAGCCCTCTACCTATCAACCGGCCATCCATGAGACAAGTGGTTAAATTGTTGGAAGAAGTTCGAACGGATAGCCATTCGAAGATCGGCAGGAAAGAGGGAAAATTGACGCCGTATTATTTCGAGGATGCTTCGGATAGTGGACGTGTGTCGTTTAAGTAA 2979 45.85 MSLFLFLFLGFPLFSLALNEESQVLLSLKRSLEDRRNILSSWNDRDANPCSWYGITCDNYRHVISIELPSSGITAPFPIHLCRLRHLLYISLYNNTLHSLLPEDIANCTHLEYLDVGQNLLTGPLPSSLADLPNLRYLDLSGNNFSGEIPQSFARLPSLEVFSLIFNFVGGPIPPFLGNVSTLRMLNLSYNPFTPGRIPPELGNLENLEVLWLTNCNLEGEIPDSLGRLKHLVLLDLSMNMLTGSFPPALTELSSVSQIELFNNSLSGVLPNGLSKLKFLRMLDVSMNHFVGPIPGDLFDLPLESLNVFENRLEGSLPESMGNSRTLAEIKLFRNRFTGELPRHLGKYSPLKALDISDNFFTGSLPEGLCKNGKLVEVMMLNNRFSGELPSSLGNCHSLSRFRLANNYFTGHVPENLWGLPNVALLEFTNNTFSGPISKKIGNAKELSLLLISHNNFSGTIPEEIGSLQNLVDFSGDHNMFVGHFPESLTKMERLVKLDLQNNMLSGLLTSKFEAWRRLNELNLANNNFSGEIPPEIASLSVLNYLDLSSNHFSGEIPNGLQNLNLNVLNLSFNHLTGTLPSYFEGSGYKNSFLGNPDLCREENGACKLIHSQRKEGGGIWVLRAIFILAVLIFCVGVVLFHIKYKKFLKARSLNIKSKWTMISFHKLSFDEDEIVGSLDEDNVVGSGGSGQVYKVALANGEIIAVKKLWAEVPKDRKSIDLENNWAEDNAFDAEVKTLGKIRHKNIVKLWCCCTNGDSRLLVYEYMPNGSLGDMLHGSKSELLDWSTRYKIALDAAEGLSYLHHDCVPPIVHRDVKSNNILLDADFGARIADFGVAMAVDMSANKSMSVIAGSCGYIAPEYAYTLKVNEKTDIFSYGMVVLELITGKCPTDPEFEENALVKWVCTTLEQEGINHVLDPKLNTCHHDEMLKVLNIGLLCSSPLPINRPSMRQVVKLLEEVRTDSHSKIGRKEGKLTPYYFEDASDSGRVSFK 992
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2788352 2791455 - Maker00011987 Lcy1g0315 622227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0315 992 ProSitePatterns Serine/Threonine protein kinases active-site signature. 811 823 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0315 992 Pfam Leucine rich repeat N-terminal domain 18 58 IPR013210 -
Lcy1g0315 992 SUPERFAMILY Protein kinase-like (PK-like) 670 958 IPR011009 -
Lcy1g0315 992 FunFam Receptor-like protein kinase HSL1 302 609 - -
Lcy1g0315 992 ProSitePatterns Protein kinases ATP-binding region signature. 685 708 IPR017441 GO:0005524(InterPro)
Lcy1g0315 992 SMART LRR_typ_2 540 563 IPR003591 -
Lcy1g0315 992 SMART LRR_typ_2 205 229 IPR003591 -
Lcy1g0315 992 SMART LRR_typ_2 492 515 IPR003591 -
Lcy1g0315 992 SMART LRR_typ_2 84 107 IPR003591 -
Lcy1g0315 992 SMART LRR_typ_2 132 155 IPR003591 -
Lcy1g0315 992 SMART LRR_typ_2 277 301 IPR003591 -
Lcy1g0315 992 Pfam Leucine rich repeat 494 553 IPR001611 GO:0005515(InterPro)
Lcy1g0315 992 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 767 974 - -
Lcy1g0315 992 Gene3D Transferase(Phosphotransferase) domain 1 767 980 - -
Lcy1g0315 992 SMART serkin_6 679 957 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0315 992 ProSiteProfiles Protein kinase domain profile. 679 968 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0315 992 PANTHER OS04G0122200 PROTEIN 478 957 IPR051809 -
Lcy1g0315 992 Gene3D Phosphorylase Kinase; domain 1 660 766 - -
Lcy1g0315 992 Pfam Protein kinase domain 682 954 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0315 992 Pfam Leucine Rich Repeat 110 132 IPR001611 GO:0005515(InterPro)
Lcy1g0315 992 Pfam Leucine Rich Repeat 351 371 IPR001611 GO:0005515(InterPro)
Lcy1g0315 992 Pfam Leucine Rich Repeat 183 205 IPR001611 GO:0005515(InterPro)
Lcy1g0315 992 Pfam Leucine Rich Repeat 207 229 IPR001611 GO:0005515(InterPro)
Lcy1g0315 992 Pfam Leucine Rich Repeat 565 585 IPR001611 GO:0005515(InterPro)
Lcy1g0315 992 Pfam Leucine Rich Repeat 231 253 IPR001611 GO:0005515(InterPro)
Lcy1g0315 992 Pfam Leucine Rich Repeat 134 156 IPR001611 GO:0005515(InterPro)
Lcy1g0315 992 Pfam Leucine Rich Repeat 447 468 IPR001611 GO:0005515(InterPro)
Lcy1g0315 992 Gene3D Ribonuclease Inhibitor 17 176 IPR032675 -
Lcy1g0315 992 Gene3D Ribonuclease Inhibitor 181 299 IPR032675 -
Lcy1g0315 992 SUPERFAMILY L domain-like 303 601 - -
Lcy1g0315 992 Gene3D Ribonuclease Inhibitor 300 615 IPR032675 -
Lcy1g0315 992 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 18 180 - -
Lcy1g0315 992 FunFam Receptor-like protein kinase HSL1 663 766 - -
Lcy1g0315 992 FunFam Leucine-rich receptor-like protein kinase family protein 198 296 - -
Lcy1g0315 992 SUPERFAMILY L domain-like 41 301 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0315 Lcy-Chr1:2788352 Lcy6g1083 Lcy-Chr6:12087105 3.26E-94 dispersed
Lcy1g0315 Lcy-Chr1:2788352 Lcy4g0505 Lcy-Chr4:6134983 2.55E-153 wgd
Lcy1g0315 Lcy-Chr1:2788352 Lcy5g1855 Lcy-Chr5:41365553 8.06E-177 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65610 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0315 - - - 0.0