Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0317 ATGGAGTCGCAGTTGCTCTCACGCGCCACCTCCTTCGCCGGCGGCATTCCCACCCTCCGCAAGTTGCACAGAGATACCACTGCGAACAACAACCACGTCGCCTTCGTCCAGACCAGGCCGATCGCCGAGGGAGCCAACTTGATTTGGGGACGACAATTGCGCCCGTCTCTCCTCCTCGATAACCTCTCGGCGCCGAATCTAGTCTCCGCCAAACGGGAGACGGTTCGGCCTACCTTCGCGGCCGCCTCTTCTTCTCCCGCCGGAGGCAGCGATTCCGCCGGGGAGGTTGCTCCGGTGGGCTTCTTCGAAAAGTATCCGGCGTTGGTCACCGGATTCTTCTTCTTCATGTGGTACTTCTTGAACGTGATTTTCAATATCCTCAACAAGAAGATCTATAATTACTTTCCCTATCCTTATTTTGTGTCGGTGATCCATTTGTTAGTTGGGGTGGTGTACTGTTTGATAAGCTGGGTTGTGGGTCTTCCTAAGCGAGCACCTATTGACTCAACCCTCCTGAAGTTGCTGATCCCTGTAGCTTTCTGTCATGCCCTTGGCCACGTCACTAGCAATGTCTCATTCGCAGCTGTTGCTGTCTCATTCACACACACAATCAAAGCTCTGGAACCGTTCTTTAACGCTGCCGCTTCTCAATTCATTTTGGGGCAATCCATTCCCATTACCTTGTGGCTTTCGTTGGCTCCCGTTGTCATTGGTGTGTCAATGGCTTCTTTGACTGAGCTTTCATTCAACTGGACTGGCTTCATTAGTGCTATGATTTCCAATATCTCCTTTACCTACAGAAGTCTTTATTCAAAGAAAGCCATGACTGACATGGACAGCACCAATGTCTATGCCTATATTTCCATCATCGCTCTCCTTTTCTGCATTCCACCTGCTGTAATTGTGGAGGGGCCTCAACTGCTGAAGTTTGGTTTCAATGATGCCATAGCTAAAGTTGGTCTAACCAAATTCGTCTCAGATCTGTTCTGGGTAGGAATGTTTTATCACCTTTACAATCAGTTAGCAACCAACACCCTGGAGAGGGTGGCACCACTTACCCATGCAGTTGGAAATGTGCTGAAACGTGTATTTGTGATTGGATTCTCCATCATTGTCTTTGGTAACAAAATTTCAACACAGACTGGTATTGGAACCAGCATTGCAATTGCAGGTGTCGCACTTTACTCTTACATCAAGGCTAAGATGGAAGAAGAGAAACGAGTGAGTTTTAGCCTTATTACATGA 1245 48.35 MESQLLSRATSFAGGIPTLRKLHRDTTANNNHVAFVQTRPIAEGANLIWGRQLRPSLLLDNLSAPNLVSAKRETVRPTFAAASSSPAGGSDSAGEVAPVGFFEKYPALVTGFFFFMWYFLNVIFNILNKKIYNYFPYPYFVSVIHLLVGVVYCLISWVVGLPKRAPIDSTLLKLLIPVAFCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQSIPITLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSLYSKKAMTDMDSTNVYAYISIIALLFCIPPAVIVEGPQLLKFGFNDAIAKVGLTKFVSDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSIIVFGNKISTQTGIGTSIAIAGVALYSYIKAKMEEEKRVSFSLIT 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2801873 2805413 + Maker00011713 Lcy1g0317 622229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0317 414 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 108 406 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Lcy1g0317 414 PANTHER SOLUTE CARRIER FAMILY 35 103 400 IPR050186 GO:0005794(PANTHER)|GO:0015297(PANTHER)
Lcy1g0317 414 Pfam Triose-phosphate Transporter family 109 396 IPR004853 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0317 Lcy-Chr1:2801873 Lcy7g0333 Lcy-Chr7:2808804 8.11E-163 dispersed
Lcy1g0317 Lcy-Chr1:2801873 Lcy1g0432 Lcy-Chr1:3821619 5.30E-76 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0317 K15283 - csv:101220728 751.51