Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0318 ATGGAAGCTGCTGCTTCTGACGGCGAAAATCACAACCACAATAATGATAATATTAACAAAATTACTAACTCAAGTGAGGGTCTTAGCAAGCCCAAGCGCCAGATGAAGACTCCGTTCCAGCTTGAAACCCTCGAGAAAGCCTATGCTGTGGAGACGTACCCATCAGAGTCGATAAGGGCTGAACTCTCGGAGAAATTGGGGCTCACCGATCGGCAATTGCAGATGTGGTTTTGTCACAGGAGGTTGAAGGACAAGAAGGAACCGGCGAAAAAACCGCGAAAGGTGGCACCGACGTTGCCTGATTCTCCCATTGACGAATTGAGAGTGGTGGCCGAGCCGGGTAGTGATTATGCTTCAGGGTCGGGCTCGGGTTCAAGTCCTTTCGGTGATGTTGGGTTGCGTAATGTGGTACCTAGAAGTGTTGGAGACGATATGCCAGTGATGAGAAGGTATTATGAACCTCCACGGTCCGTTTTGGAGCTTAGAGCTATTGCTTGTGTGGAGTCGCAGTTAGGAGAGCCGTTGAGGGAAGACGGACCTATTCTTGGGATTGAATTTGATCCATTACCACCTGATGCTTTCGGAGCACCTATAGGTTGTACTACTATGTCCTTGAGTTGTAAGAACAATGCTTGTCGTGGCTTAATGGGGTTCCAGTGTTTTACTCTAGAACCTGATTCTTGTGGTATAAGAATTCTTGATGATAATAGTATTTTGCTGAACATTTTGTTACTTCTTGTGGTTAAACAGTGGCAGAACAGCAGAAGCGTTCAGGACATTCGTATGGGGACAAATATGAACAACGGGATGCAAAATCAAATAAAAGAGGTCTCCATTGGGCTCTTCTGTTGCCCCTTTACAGCGGGTTCCTTGTTTCCCCCTAAACAGCAGGCGACTCCAAGGGCATTCCCCGAATATCCATTTATGCCAGACCAGTCTAATATTAGAGCTGATGCGTATGGACCAGTTGCCCAATCGCATTATCCAGATTCATTAGTTGAGGTTTCAGCATCCAGGACACAATCATTTATGCTTGGTCATGAACAGTTGAACAGGAGCCATAATTACCATGGTCAGGTCTCAAGGGTTCGTCTTCTGTCTCAACAGGAGAAGCAGGGAGTTGCAGTTCCATCTCCTGCTGAAGATAACGCATTTGTTCCTGCAAGGGATTCTTTTGCTAGTATCAGAATGAATTCTCAGTTCACTGATCACCCAATTGTTGGACAAGATAATTCGTATGTGTTGCCTGATGGGCATGTTTTTCCAAATGATGTCATCATTAGGATGGAAAGAAAACGCAAGAGTGAAGAAGCTCGTCTGAACAAAGAAGCCGAAGCCCATGAAATAAGAATGCGAAAAGAGCTTGAGAAACAAGATAATTTGAGGAAAAAGAGTGAAGAACGAATGAGGAAAGAAATGGAAAAGCAAGATCGTGAAAGAAGGAGAGAAGAGGAGAGGTTACTACGAGAAAAGCAGCGGGAAGCAGAGAGATTGAAGCGTGAGGAAAGACGTGAACATGAACGGAGGGAAAAGTTTCTGCAGAGGGAGTATTTGAGGGCTGAGAAGAGAAAACAAAAAGAAGCTATTCGCAAAGAAAAGGAAGCAGTGAGACGCAAAGCTGCTATTGAGAAGGCTACTGCTCGTAGAATTGCCCGTGAGTCTATGGAGCTTATTGAGGACGAACAGCTTGAATTGATGGAACTGGCTGCTGCGAACAAAGGATTATCCTCCATATTAAGTCTTGATCATGACACTTTGCAGAATCTTGAATCTTTCCGAGATTATCTAGTTGCCTTTCCACCCAAGTCTGTGCAATTGAAAAAACCTTTCAGCATCCAGCCTTGGATCAATTCAGAGGAGAACATTGGTAACCTTCTCATGGTCTGGAGATTTTTTATTACATTTTCTGATGTTCTAGAGCTATGGCCCTTTACTCTTGATGAGTTTGTTCAAGCTCTTCATGACTATGATTCAAGATTGCTGGGTGAGATTCACATTTGTCTTCTGAGACTGATTGTAAAAGATATTGAAGATGTTGCTAGAACACCTTCTGCTGGATTGGGAATGAATCAGAATGGTGTTGCCAATACTGGAGGTGGACATCCACAGATTGTTGAAGGGGCATATGCGTGGGGGTTTGACATTTGCAACTGGCAGAAACATTTAAACCCATTAACATGGCCTGAAATATTTCGACAATTAGCACTATCAGCGGGATTTGGACCACAGTTGAAGAAGAGGAGTTTGGCATGGTCTGAAATGCGTAGCAATGATGAGGCTAAATGTGGTGAGGACGTAGTTTCTACACTTCGCAATGGTTCAGCAGCTGAAAATGCATTTGCTATCATGCAAGAGAAAGGTTTGTTAGCTCCTCGAAGATCTAGGCATCGGCTAACTCCTGGAACTGTGAAATTTGCTGCTTTTCATGTCCTTTCACTGGAAGGCAGTGAGGGGTTAACAGTACTAGAACTTGCAGAGAAGATACAGAGATCTGGACTTAGAGATCTGTCTACGAGCAAAACACCAGAGGCTTCCATTTCTGTTGCTTTGACAAGGGATACTAAGCTTTTTGAAAGAATAGCACCTTCCACATATCGTGTACGAGCTCCCTATAGGAAGGATCCAGATGATGCCGAGGAAATACTTTCAGTAGCCAGGAAGAAAATTCAGGTATTCCAGAATGGGTTTTTGGCTGGAGAAGATGCTGATGATGTTGAAAGAGACGAAGAATCTGAATGTGACGATGTTGATGAAGATCCTGAAGTTGATGACGTAGCGACAACATCTTTGGTGAATGAAGATGTTAGCAAAGGAGATGCTAACTTAGGAGTTGAGAATGAGAACTTATGTCATGATATTGCTGGAAATCCACAAAATGAAATTTCCAAAGATATACCATCCTTCCCCTTAAGTGGCTCCAAGGACACAAAATATTTAAATATACCTACAGAGCAATATGCTGCTGTTGATGAGACTACTATTAGTGATCTCGATCAAGAAAATATGGAGATTGATGAAAGCAAGGAAGGTGAATCATGGATTCAAGGACTTACAGAAGGTGAATATCATGATCTTAGCGTTGAGGAGCGCTTGAATGCCCTCATTGCCTTAACCAGCATTGCAAATGAAGGAAACTCTATTCGCCTTGTTCTTGAGGATCGTTTGGAAGCTGCAAATGCTGTTAAGAAGCAAATGTTGGCAGAGGCTCAGATTGATAAATCTCGCCTAAAAGAGGAGATCATTACAAAATCTGATTTTCCAATTCACGTAGTGAGCAAGGTGGAAACTGAACTCAATGGTTCCACTATGGAGGGTGGCCAAAGCCCTTTACCTGTTGCTGAAAATAAGAACAATGAAACAACTCCAAGCACCGCAGAAAACCTCGGTAGTGTGCCTAATGAGAGGGCTACTTTGGTGCCAGATCTTTTCCCAGGCCCAGATAACTTTTTGGCTCATCAATGTGGACACGCTTCAAAGAGGTCACGTTCACAGTTAAAATCTTATATTGCCCACAGAGCTGAAGAATTGTACACATACAGGTCCTTGCCTCTTGGTCGAGATCGTAGGCGTAATCGATACTGGCAATTTGTTGCGTCTTCTTCTAGCAATGATCCTGGTTCTGGGAGAATCTTTGTTGAAATGTATGATGGAAAATGGAGGCTTATTGATTCTGAAGAGGGCTTTGATGCTCTTTCAATGGCTTTGGACACACGTGGGATTAGAGAATCACACCTCCGCATAATGTTGCAAATGATAGAGACATCATTTAAGGAAAATGTTCGGAGGAATCTGCAGTGTGCCAATGTGATGGTTCAAAGTAGAATTACTCCTAAAACTGAAAATGATGAATCGAGTTCTAGTCCTGATTGCAACACTAGTTTTAACAGTCCTAGCAGTACTGTTTGCGGTTTAAATTTGGATACAATGACAACATCATCTTCATTCAGAATTGAGCTTGGGAGAAATGAAAATGAAAAGAAGGCTGCATTTAAAAGGTATCAGGACTTGCAGAGGTGGATGTTAAGAGAGTGCTTTAGCGCATCAACATTATGTGCCATGAAATTTGGAGAAAAAAGGTGCACATCGCAGTTGGACATTTGTGATTCTTGTCTGTGCTTGTTTGATTCTGAACATTCTCACTGCTCTTCGTGCCATCAAACTTTTGGCATTAGTGGGAATGATATTAATTTTTTGGAACACAAACGTCACTGTGAGAGGGAAAGGAAGTCTAACCACTGGGATACACACACTTTAGATGCATCTCTTCCCCTCAAAAGTAGATTGCTCAAGGTCCTTTTAGCTTTCATTGAGGTACATGTTCCGTCAGAAGCTTTTCAATCATTTTGGACAGAACATAGGAAAGATTGGGGTGTCAGGATGAAATTATCATCATCTATTGAAGAGCTTCTACAGATATTGACCCTGTTTGAAAGTGTAATCAAGCGAGACTTTCTAAAATCAGAATTTACTACAACAGACGAGCACCTGAGCTCATGTTCCATCTCTGGGAATGTTATACATGACCCAGCAGATATTGGGTCTGTTATAATATTACCATGGATTCCACGGACTAGTGCAGCTGTTGCTTTAAGGCTTTGTGAGGTAGATGCATCGATATATTATATTGGGTGTGAGAAACCAGAGCCTGACGAGGATAAGGAAATCGGAGAACATATGAACTTTCCTAGTAGATATGTCCAGAATGATGAACGGCCTAAACTAAACGAACTGGACTATGATGATCTGATGAAGAAAGAAAACTTAGCTGATCCTAAAAGTTTAAGGAACAGCTACAAACGTGGTCGAGGGAGTCGAGATCATGGACGTCGTAAAAGGTGGCAGAAAAAAGTTAACGGTTCTAAATCTGGCCGTGTCCGGCAAAGTGTCAAGAGTAATGAGAAGATGAATCAAGGACAGAGGCAACTGGGACAAGGAACACAGGTTATGGGTGTGCGAGGCCGCCGTACGGTAAGGAAGAGAAGGGCTGAGAAGAGCATTCCAGATGAAGGATTGATGGGGCTAGTGCCCAGTAGTACTCAGAATATAGATGAATCCCCTAAAGAATATATTGGGGAATGGGAGGATGAAAAAATTGATAGGTTCGTGGATATGGAAGATGAAGAGAATGTGATAGAAGACGAAGAGAATGTGATGGAAGATGAAGAGAATGAAGAGAATGTAAACAATGTAGAACCAATGGACTCTGACGACGACGCCCAGGGTGTTGGTTATGAGCAAGGGGGTTGGGAGTTTGGTTTTGAAGGCACCTCCAACAGATGGAATGGTGATTTAGGGATGGCTAGTGATGAGGATGTGGATTTATCCGAGGATTACAATGGCACTGAAGAGGGTGGAAATGATGATATGGAAGAGTTAGACGTTGATACGAGCGAGGAGTCGGATTGTTCACCAAATAGGATAGGCAACAATGGTGGAGGAGAATCCGCTGTTTCAGACGATTATAGTGATTAA 5472 42.84 MEAAASDGENHNHNNDNINKITNSSEGLSKPKRQMKTPFQLETLEKAYAVETYPSESIRAELSEKLGLTDRQLQMWFCHRRLKDKKEPAKKPRKVAPTLPDSPIDELRVVAEPGSDYASGSGSGSSPFGDVGLRNVVPRSVGDDMPVMRRYYEPPRSVLELRAIACVESQLGEPLREDGPILGIEFDPLPPDAFGAPIGCTTMSLSCKNNACRGLMGFQCFTLEPDSCGIRILDDNSILLNILLLLVVKQWQNSRSVQDIRMGTNMNNGMQNQIKEVSIGLFCCPFTAGSLFPPKQQATPRAFPEYPFMPDQSNIRADAYGPVAQSHYPDSLVEVSASRTQSFMLGHEQLNRSHNYHGQVSRVRLLSQQEKQGVAVPSPAEDNAFVPARDSFASIRMNSQFTDHPIVGQDNSYVLPDGHVFPNDVIIRMERKRKSEEARLNKEAEAHEIRMRKELEKQDNLRKKSEERMRKEMEKQDRERRREEERLLREKQREAERLKREERREHERREKFLQREYLRAEKRKQKEAIRKEKEAVRRKAAIEKATARRIARESMELIEDEQLELMELAAANKGLSSILSLDHDTLQNLESFRDYLVAFPPKSVQLKKPFSIQPWINSEENIGNLLMVWRFFITFSDVLELWPFTLDEFVQALHDYDSRLLGEIHICLLRLIVKDIEDVARTPSAGLGMNQNGVANTGGGHPQIVEGAYAWGFDICNWQKHLNPLTWPEIFRQLALSAGFGPQLKKRSLAWSEMRSNDEAKCGEDVVSTLRNGSAAENAFAIMQEKGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSEGLTVLELAEKIQRSGLRDLSTSKTPEASISVALTRDTKLFERIAPSTYRVRAPYRKDPDDAEEILSVARKKIQVFQNGFLAGEDADDVERDEESECDDVDEDPEVDDVATTSLVNEDVSKGDANLGVENENLCHDIAGNPQNEISKDIPSFPLSGSKDTKYLNIPTEQYAAVDETTISDLDQENMEIDESKEGESWIQGLTEGEYHDLSVEERLNALIALTSIANEGNSIRLVLEDRLEAANAVKKQMLAEAQIDKSRLKEEIITKSDFPIHVVSKVETELNGSTMEGGQSPLPVAENKNNETTPSTAENLGSVPNERATLVPDLFPGPDNFLAHQCGHASKRSRSQLKSYIAHRAEELYTYRSLPLGRDRRRNRYWQFVASSSSNDPGSGRIFVEMYDGKWRLIDSEEGFDALSMALDTRGIRESHLRIMLQMIETSFKENVRRNLQCANVMVQSRITPKTENDESSSSPDCNTSFNSPSSTVCGLNLDTMTTSSSFRIELGRNENEKKAAFKRYQDLQRWMLRECFSASTLCAMKFGEKRCTSQLDICDSCLCLFDSEHSHCSSCHQTFGISGNDINFLEHKRHCERERKSNHWDTHTLDASLPLKSRLLKVLLAFIEVHVPSEAFQSFWTEHRKDWGVRMKLSSSIEELLQILTLFESVIKRDFLKSEFTTTDEHLSSCSISGNVIHDPADIGSVIILPWIPRTSAAVALRLCEVDASIYYIGCEKPEPDEDKEIGEHMNFPSRYVQNDERPKLNELDYDDLMKKENLADPKSLRNSYKRGRGSRDHGRRKRWQKKVNGSKSGRVRQSVKSNEKMNQGQRQLGQGTQVMGVRGRRTVRKRRAEKSIPDEGLMGLVPSSTQNIDESPKEYIGEWEDEKIDRFVDMEDEENVIEDEENVMEDEENEENVNNVEPMDSDDDAQGVGYEQGGWEFGFEGTSNRWNGDLGMASDEDVDLSEDYNGTEEGGNDDMEELDVDTSEESDCSPNRIGNNGGGESAVSDDYSD 1823
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2807542 2822761 + Maker00011866 Lcy1g0318 622230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0318 1823 Pfam HB1, ASXL, restriction endonuclease HTH domain 801 868 IPR007759 GO:0006355(InterPro)
Lcy1g0318 1823 Gene3D - 21 98 - -
Lcy1g0318 1823 MobiDBLite consensus disorder prediction 1702 1823 - -
Lcy1g0318 1823 MobiDBLite consensus disorder prediction 1620 1646 - -
Lcy1g0318 1823 MobiDBLite consensus disorder prediction 454 486 - -
Lcy1g0318 1823 ProSiteProfiles HARE-type HTH domain profile. 801 870 IPR007759 GO:0006355(InterPro)
Lcy1g0318 1823 MobiDBLite consensus disorder prediction 1801 1823 - -
Lcy1g0318 1823 CDD homeodomain 32 87 IPR001356 GO:0003677(InterPro)
Lcy1g0318 1823 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 1 1823 IPR044977 GO:0006357(InterPro)
Lcy1g0318 1823 SMART testlast3 619 678 IPR018501 -
Lcy1g0318 1823 MobiDBLite consensus disorder prediction 1585 1601 - -
Lcy1g0318 1823 Pfam Homeodomain 30 86 IPR001356 GO:0003677(InterPro)
Lcy1g0318 1823 Coils Coil 426 539 - -
Lcy1g0318 1823 SUPERFAMILY Homeodomain-like 21 87 IPR009057 -
Lcy1g0318 1823 Coils Coil 1059 1079 - -
Lcy1g0318 1823 MobiDBLite consensus disorder prediction 902 920 - -
Lcy1g0318 1823 SMART HOX_1 29 91 IPR001356 GO:0003677(InterPro)
Lcy1g0318 1823 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1008 1051 IPR028942 -
Lcy1g0318 1823 ProSiteProfiles DDT domain profile. 619 678 IPR018501 -
Lcy1g0318 1823 MobiDBLite consensus disorder prediction 1 36 - -
Lcy1g0318 1823 MobiDBLite consensus disorder prediction 1702 1732 - -
Lcy1g0318 1823 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1179 1251 IPR028941 -
Lcy1g0318 1823 MobiDBLite consensus disorder prediction 901 920 - -
Lcy1g0318 1823 MobiDBLite consensus disorder prediction 1602 1619 - -
Lcy1g0318 1823 MobiDBLite consensus disorder prediction 1769 1798 - -
Lcy1g0318 1823 Pfam DDT domain 620 675 IPR018501 -
Lcy1g0318 1823 ProSiteProfiles 'Homeobox' domain profile. 27 87 IPR001356 GO:0003677(InterPro)
Lcy1g0318 1823 MobiDBLite consensus disorder prediction 1585 1662 - -
Lcy1g0318 1823 MobiDBLite consensus disorder prediction 8 31 - -
Lcy1g0318 1823 MobiDBLite consensus disorder prediction 1275 1298 - -
Lcy1g0318 1823 MobiDBLite consensus disorder prediction 1099 1130 - -
Lcy1g0318 1823 Coils Coil 1704 1724 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0318 Lcy-Chr1:2807542 Lcy9g0598 Lcy-Chr9:19608473 2.26E-29 dispersed
Lcy8g2065 Lcy-Chr8:46860242 Lcy1g0318 Lcy-Chr1:2807542 2.15E-15 transposed
Lcy1g0318 Lcy-Chr1:2807542 Lcy4g0504 Lcy-Chr4:6107002 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19503 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0318 - - - 0.0