Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy1g0318 | ATGGAAGCTGCTGCTTCTGACGGCGAAAATCACAACCACAATAATGATAATATTAACAAAATTACTAACTCAAGTGAGGGTCTTAGCAAGCCCAAGCGCCAGATGAAGACTCCGTTCCAGCTTGAAACCCTCGAGAAAGCCTATGCTGTGGAGACGTACCCATCAGAGTCGATAAGGGCTGAACTCTCGGAGAAATTGGGGCTCACCGATCGGCAATTGCAGATGTGGTTTTGTCACAGGAGGTTGAAGGACAAGAAGGAACCGGCGAAAAAACCGCGAAAGGTGGCACCGACGTTGCCTGATTCTCCCATTGACGAATTGAGAGTGGTGGCCGAGCCGGGTAGTGATTATGCTTCAGGGTCGGGCTCGGGTTCAAGTCCTTTCGGTGATGTTGGGTTGCGTAATGTGGTACCTAGAAGTGTTGGAGACGATATGCCAGTGATGAGAAGGTATTATGAACCTCCACGGTCCGTTTTGGAGCTTAGAGCTATTGCTTGTGTGGAGTCGCAGTTAGGAGAGCCGTTGAGGGAAGACGGACCTATTCTTGGGATTGAATTTGATCCATTACCACCTGATGCTTTCGGAGCACCTATAGGTTGTACTACTATGTCCTTGAGTTGTAAGAACAATGCTTGTCGTGGCTTAATGGGGTTCCAGTGTTTTACTCTAGAACCTGATTCTTGTGGTATAAGAATTCTTGATGATAATAGTATTTTGCTGAACATTTTGTTACTTCTTGTGGTTAAACAGTGGCAGAACAGCAGAAGCGTTCAGGACATTCGTATGGGGACAAATATGAACAACGGGATGCAAAATCAAATAAAAGAGGTCTCCATTGGGCTCTTCTGTTGCCCCTTTACAGCGGGTTCCTTGTTTCCCCCTAAACAGCAGGCGACTCCAAGGGCATTCCCCGAATATCCATTTATGCCAGACCAGTCTAATATTAGAGCTGATGCGTATGGACCAGTTGCCCAATCGCATTATCCAGATTCATTAGTTGAGGTTTCAGCATCCAGGACACAATCATTTATGCTTGGTCATGAACAGTTGAACAGGAGCCATAATTACCATGGTCAGGTCTCAAGGGTTCGTCTTCTGTCTCAACAGGAGAAGCAGGGAGTTGCAGTTCCATCTCCTGCTGAAGATAACGCATTTGTTCCTGCAAGGGATTCTTTTGCTAGTATCAGAATGAATTCTCAGTTCACTGATCACCCAATTGTTGGACAAGATAATTCGTATGTGTTGCCTGATGGGCATGTTTTTCCAAATGATGTCATCATTAGGATGGAAAGAAAACGCAAGAGTGAAGAAGCTCGTCTGAACAAAGAAGCCGAAGCCCATGAAATAAGAATGCGAAAAGAGCTTGAGAAACAAGATAATTTGAGGAAAAAGAGTGAAGAACGAATGAGGAAAGAAATGGAAAAGCAAGATCGTGAAAGAAGGAGAGAAGAGGAGAGGTTACTACGAGAAAAGCAGCGGGAAGCAGAGAGATTGAAGCGTGAGGAAAGACGTGAACATGAACGGAGGGAAAAGTTTCTGCAGAGGGAGTATTTGAGGGCTGAGAAGAGAAAACAAAAAGAAGCTATTCGCAAAGAAAAGGAAGCAGTGAGACGCAAAGCTGCTATTGAGAAGGCTACTGCTCGTAGAATTGCCCGTGAGTCTATGGAGCTTATTGAGGACGAACAGCTTGAATTGATGGAACTGGCTGCTGCGAACAAAGGATTATCCTCCATATTAAGTCTTGATCATGACACTTTGCAGAATCTTGAATCTTTCCGAGATTATCTAGTTGCCTTTCCACCCAAGTCTGTGCAATTGAAAAAACCTTTCAGCATCCAGCCTTGGATCAATTCAGAGGAGAACATTGGTAACCTTCTCATGGTCTGGAGATTTTTTATTACATTTTCTGATGTTCTAGAGCTATGGCCCTTTACTCTTGATGAGTTTGTTCAAGCTCTTCATGACTATGATTCAAGATTGCTGGGTGAGATTCACATTTGTCTTCTGAGACTGATTGTAAAAGATATTGAAGATGTTGCTAGAACACCTTCTGCTGGATTGGGAATGAATCAGAATGGTGTTGCCAATACTGGAGGTGGACATCCACAGATTGTTGAAGGGGCATATGCGTGGGGGTTTGACATTTGCAACTGGCAGAAACATTTAAACCCATTAACATGGCCTGAAATATTTCGACAATTAGCACTATCAGCGGGATTTGGACCACAGTTGAAGAAGAGGAGTTTGGCATGGTCTGAAATGCGTAGCAATGATGAGGCTAAATGTGGTGAGGACGTAGTTTCTACACTTCGCAATGGTTCAGCAGCTGAAAATGCATTTGCTATCATGCAAGAGAAAGGTTTGTTAGCTCCTCGAAGATCTAGGCATCGGCTAACTCCTGGAACTGTGAAATTTGCTGCTTTTCATGTCCTTTCACTGGAAGGCAGTGAGGGGTTAACAGTACTAGAACTTGCAGAGAAGATACAGAGATCTGGACTTAGAGATCTGTCTACGAGCAAAACACCAGAGGCTTCCATTTCTGTTGCTTTGACAAGGGATACTAAGCTTTTTGAAAGAATAGCACCTTCCACATATCGTGTACGAGCTCCCTATAGGAAGGATCCAGATGATGCCGAGGAAATACTTTCAGTAGCCAGGAAGAAAATTCAGGTATTCCAGAATGGGTTTTTGGCTGGAGAAGATGCTGATGATGTTGAAAGAGACGAAGAATCTGAATGTGACGATGTTGATGAAGATCCTGAAGTTGATGACGTAGCGACAACATCTTTGGTGAATGAAGATGTTAGCAAAGGAGATGCTAACTTAGGAGTTGAGAATGAGAACTTATGTCATGATATTGCTGGAAATCCACAAAATGAAATTTCCAAAGATATACCATCCTTCCCCTTAAGTGGCTCCAAGGACACAAAATATTTAAATATACCTACAGAGCAATATGCTGCTGTTGATGAGACTACTATTAGTGATCTCGATCAAGAAAATATGGAGATTGATGAAAGCAAGGAAGGTGAATCATGGATTCAAGGACTTACAGAAGGTGAATATCATGATCTTAGCGTTGAGGAGCGCTTGAATGCCCTCATTGCCTTAACCAGCATTGCAAATGAAGGAAACTCTATTCGCCTTGTTCTTGAGGATCGTTTGGAAGCTGCAAATGCTGTTAAGAAGCAAATGTTGGCAGAGGCTCAGATTGATAAATCTCGCCTAAAAGAGGAGATCATTACAAAATCTGATTTTCCAATTCACGTAGTGAGCAAGGTGGAAACTGAACTCAATGGTTCCACTATGGAGGGTGGCCAAAGCCCTTTACCTGTTGCTGAAAATAAGAACAATGAAACAACTCCAAGCACCGCAGAAAACCTCGGTAGTGTGCCTAATGAGAGGGCTACTTTGGTGCCAGATCTTTTCCCAGGCCCAGATAACTTTTTGGCTCATCAATGTGGACACGCTTCAAAGAGGTCACGTTCACAGTTAAAATCTTATATTGCCCACAGAGCTGAAGAATTGTACACATACAGGTCCTTGCCTCTTGGTCGAGATCGTAGGCGTAATCGATACTGGCAATTTGTTGCGTCTTCTTCTAGCAATGATCCTGGTTCTGGGAGAATCTTTGTTGAAATGTATGATGGAAAATGGAGGCTTATTGATTCTGAAGAGGGCTTTGATGCTCTTTCAATGGCTTTGGACACACGTGGGATTAGAGAATCACACCTCCGCATAATGTTGCAAATGATAGAGACATCATTTAAGGAAAATGTTCGGAGGAATCTGCAGTGTGCCAATGTGATGGTTCAAAGTAGAATTACTCCTAAAACTGAAAATGATGAATCGAGTTCTAGTCCTGATTGCAACACTAGTTTTAACAGTCCTAGCAGTACTGTTTGCGGTTTAAATTTGGATACAATGACAACATCATCTTCATTCAGAATTGAGCTTGGGAGAAATGAAAATGAAAAGAAGGCTGCATTTAAAAGGTATCAGGACTTGCAGAGGTGGATGTTAAGAGAGTGCTTTAGCGCATCAACATTATGTGCCATGAAATTTGGAGAAAAAAGGTGCACATCGCAGTTGGACATTTGTGATTCTTGTCTGTGCTTGTTTGATTCTGAACATTCTCACTGCTCTTCGTGCCATCAAACTTTTGGCATTAGTGGGAATGATATTAATTTTTTGGAACACAAACGTCACTGTGAGAGGGAAAGGAAGTCTAACCACTGGGATACACACACTTTAGATGCATCTCTTCCCCTCAAAAGTAGATTGCTCAAGGTCCTTTTAGCTTTCATTGAGGTACATGTTCCGTCAGAAGCTTTTCAATCATTTTGGACAGAACATAGGAAAGATTGGGGTGTCAGGATGAAATTATCATCATCTATTGAAGAGCTTCTACAGATATTGACCCTGTTTGAAAGTGTAATCAAGCGAGACTTTCTAAAATCAGAATTTACTACAACAGACGAGCACCTGAGCTCATGTTCCATCTCTGGGAATGTTATACATGACCCAGCAGATATTGGGTCTGTTATAATATTACCATGGATTCCACGGACTAGTGCAGCTGTTGCTTTAAGGCTTTGTGAGGTAGATGCATCGATATATTATATTGGGTGTGAGAAACCAGAGCCTGACGAGGATAAGGAAATCGGAGAACATATGAACTTTCCTAGTAGATATGTCCAGAATGATGAACGGCCTAAACTAAACGAACTGGACTATGATGATCTGATGAAGAAAGAAAACTTAGCTGATCCTAAAAGTTTAAGGAACAGCTACAAACGTGGTCGAGGGAGTCGAGATCATGGACGTCGTAAAAGGTGGCAGAAAAAAGTTAACGGTTCTAAATCTGGCCGTGTCCGGCAAAGTGTCAAGAGTAATGAGAAGATGAATCAAGGACAGAGGCAACTGGGACAAGGAACACAGGTTATGGGTGTGCGAGGCCGCCGTACGGTAAGGAAGAGAAGGGCTGAGAAGAGCATTCCAGATGAAGGATTGATGGGGCTAGTGCCCAGTAGTACTCAGAATATAGATGAATCCCCTAAAGAATATATTGGGGAATGGGAGGATGAAAAAATTGATAGGTTCGTGGATATGGAAGATGAAGAGAATGTGATAGAAGACGAAGAGAATGTGATGGAAGATGAAGAGAATGAAGAGAATGTAAACAATGTAGAACCAATGGACTCTGACGACGACGCCCAGGGTGTTGGTTATGAGCAAGGGGGTTGGGAGTTTGGTTTTGAAGGCACCTCCAACAGATGGAATGGTGATTTAGGGATGGCTAGTGATGAGGATGTGGATTTATCCGAGGATTACAATGGCACTGAAGAGGGTGGAAATGATGATATGGAAGAGTTAGACGTTGATACGAGCGAGGAGTCGGATTGTTCACCAAATAGGATAGGCAACAATGGTGGAGGAGAATCCGCTGTTTCAGACGATTATAGTGATTAA | 5472 | 42.84 | MEAAASDGENHNHNNDNINKITNSSEGLSKPKRQMKTPFQLETLEKAYAVETYPSESIRAELSEKLGLTDRQLQMWFCHRRLKDKKEPAKKPRKVAPTLPDSPIDELRVVAEPGSDYASGSGSGSSPFGDVGLRNVVPRSVGDDMPVMRRYYEPPRSVLELRAIACVESQLGEPLREDGPILGIEFDPLPPDAFGAPIGCTTMSLSCKNNACRGLMGFQCFTLEPDSCGIRILDDNSILLNILLLLVVKQWQNSRSVQDIRMGTNMNNGMQNQIKEVSIGLFCCPFTAGSLFPPKQQATPRAFPEYPFMPDQSNIRADAYGPVAQSHYPDSLVEVSASRTQSFMLGHEQLNRSHNYHGQVSRVRLLSQQEKQGVAVPSPAEDNAFVPARDSFASIRMNSQFTDHPIVGQDNSYVLPDGHVFPNDVIIRMERKRKSEEARLNKEAEAHEIRMRKELEKQDNLRKKSEERMRKEMEKQDRERRREEERLLREKQREAERLKREERREHERREKFLQREYLRAEKRKQKEAIRKEKEAVRRKAAIEKATARRIARESMELIEDEQLELMELAAANKGLSSILSLDHDTLQNLESFRDYLVAFPPKSVQLKKPFSIQPWINSEENIGNLLMVWRFFITFSDVLELWPFTLDEFVQALHDYDSRLLGEIHICLLRLIVKDIEDVARTPSAGLGMNQNGVANTGGGHPQIVEGAYAWGFDICNWQKHLNPLTWPEIFRQLALSAGFGPQLKKRSLAWSEMRSNDEAKCGEDVVSTLRNGSAAENAFAIMQEKGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSEGLTVLELAEKIQRSGLRDLSTSKTPEASISVALTRDTKLFERIAPSTYRVRAPYRKDPDDAEEILSVARKKIQVFQNGFLAGEDADDVERDEESECDDVDEDPEVDDVATTSLVNEDVSKGDANLGVENENLCHDIAGNPQNEISKDIPSFPLSGSKDTKYLNIPTEQYAAVDETTISDLDQENMEIDESKEGESWIQGLTEGEYHDLSVEERLNALIALTSIANEGNSIRLVLEDRLEAANAVKKQMLAEAQIDKSRLKEEIITKSDFPIHVVSKVETELNGSTMEGGQSPLPVAENKNNETTPSTAENLGSVPNERATLVPDLFPGPDNFLAHQCGHASKRSRSQLKSYIAHRAEELYTYRSLPLGRDRRRNRYWQFVASSSSNDPGSGRIFVEMYDGKWRLIDSEEGFDALSMALDTRGIRESHLRIMLQMIETSFKENVRRNLQCANVMVQSRITPKTENDESSSSPDCNTSFNSPSSTVCGLNLDTMTTSSSFRIELGRNENEKKAAFKRYQDLQRWMLRECFSASTLCAMKFGEKRCTSQLDICDSCLCLFDSEHSHCSSCHQTFGISGNDINFLEHKRHCERERKSNHWDTHTLDASLPLKSRLLKVLLAFIEVHVPSEAFQSFWTEHRKDWGVRMKLSSSIEELLQILTLFESVIKRDFLKSEFTTTDEHLSSCSISGNVIHDPADIGSVIILPWIPRTSAAVALRLCEVDASIYYIGCEKPEPDEDKEIGEHMNFPSRYVQNDERPKLNELDYDDLMKKENLADPKSLRNSYKRGRGSRDHGRRKRWQKKVNGSKSGRVRQSVKSNEKMNQGQRQLGQGTQVMGVRGRRTVRKRRAEKSIPDEGLMGLVPSSTQNIDESPKEYIGEWEDEKIDRFVDMEDEENVIEDEENVMEDEENEENVNNVEPMDSDDDAQGVGYEQGGWEFGFEGTSNRWNGDLGMASDEDVDLSEDYNGTEEGGNDDMEELDVDTSEESDCSPNRIGNNGGGESAVSDDYSD | 1823 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 2807542 | 2822761 | + | Maker00011866 | Lcy1g0318 | 622230 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy1g0318 | 1823 | Pfam | HB1, ASXL, restriction endonuclease HTH domain | 801 | 868 | IPR007759 | GO:0006355(InterPro) | |
Lcy1g0318 | 1823 | Gene3D | - | 21 | 98 | - | - | |
Lcy1g0318 | 1823 | MobiDBLite | consensus disorder prediction | 1702 | 1823 | - | - | |
Lcy1g0318 | 1823 | MobiDBLite | consensus disorder prediction | 1620 | 1646 | - | - | |
Lcy1g0318 | 1823 | MobiDBLite | consensus disorder prediction | 454 | 486 | - | - | |
Lcy1g0318 | 1823 | ProSiteProfiles | HARE-type HTH domain profile. | 801 | 870 | IPR007759 | GO:0006355(InterPro) | |
Lcy1g0318 | 1823 | MobiDBLite | consensus disorder prediction | 1801 | 1823 | - | - | |
Lcy1g0318 | 1823 | CDD | homeodomain | 32 | 87 | IPR001356 | GO:0003677(InterPro) | |
Lcy1g0318 | 1823 | PANTHER | HOMEOBOX-DDT DOMAIN PROTEIN RLT2 | 1 | 1823 | IPR044977 | GO:0006357(InterPro) | |
Lcy1g0318 | 1823 | SMART | testlast3 | 619 | 678 | IPR018501 | - | |
Lcy1g0318 | 1823 | MobiDBLite | consensus disorder prediction | 1585 | 1601 | - | - | |
Lcy1g0318 | 1823 | Pfam | Homeodomain | 30 | 86 | IPR001356 | GO:0003677(InterPro) | |
Lcy1g0318 | 1823 | Coils | Coil | 426 | 539 | - | - | |
Lcy1g0318 | 1823 | SUPERFAMILY | Homeodomain-like | 21 | 87 | IPR009057 | - | |
Lcy1g0318 | 1823 | Coils | Coil | 1059 | 1079 | - | - | |
Lcy1g0318 | 1823 | MobiDBLite | consensus disorder prediction | 902 | 920 | - | - | |
Lcy1g0318 | 1823 | SMART | HOX_1 | 29 | 91 | IPR001356 | GO:0003677(InterPro) | |
Lcy1g0318 | 1823 | Pfam | WSTF, HB1, Itc1p, MBD9 motif 1 | 1008 | 1051 | IPR028942 | - | |
Lcy1g0318 | 1823 | ProSiteProfiles | DDT domain profile. | 619 | 678 | IPR018501 | - | |
Lcy1g0318 | 1823 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
Lcy1g0318 | 1823 | MobiDBLite | consensus disorder prediction | 1702 | 1732 | - | - | |
Lcy1g0318 | 1823 | Pfam | Williams-Beuren syndrome DDT (WSD), D-TOX E motif | 1179 | 1251 | IPR028941 | - | |
Lcy1g0318 | 1823 | MobiDBLite | consensus disorder prediction | 901 | 920 | - | - | |
Lcy1g0318 | 1823 | MobiDBLite | consensus disorder prediction | 1602 | 1619 | - | - | |
Lcy1g0318 | 1823 | MobiDBLite | consensus disorder prediction | 1769 | 1798 | - | - | |
Lcy1g0318 | 1823 | Pfam | DDT domain | 620 | 675 | IPR018501 | - | |
Lcy1g0318 | 1823 | ProSiteProfiles | 'Homeobox' domain profile. | 27 | 87 | IPR001356 | GO:0003677(InterPro) | |
Lcy1g0318 | 1823 | MobiDBLite | consensus disorder prediction | 1585 | 1662 | - | - | |
Lcy1g0318 | 1823 | MobiDBLite | consensus disorder prediction | 8 | 31 | - | - | |
Lcy1g0318 | 1823 | MobiDBLite | consensus disorder prediction | 1275 | 1298 | - | - | |
Lcy1g0318 | 1823 | MobiDBLite | consensus disorder prediction | 1099 | 1130 | - | - | |
Lcy1g0318 | 1823 | Coils | Coil | 1704 | 1724 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy1g0318 | Lcy-Chr1:2807542 | Lcy9g0598 | Lcy-Chr9:19608473 | 2.26E-29 | dispersed | |
Lcy8g2065 | Lcy-Chr8:46860242 | Lcy1g0318 | Lcy-Chr1:2807542 | 2.15E-15 | transposed | |
Lcy1g0318 | Lcy-Chr1:2807542 | Lcy4g0504 | Lcy-Chr4:6107002 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19503 | None | None | None | None | Lcy | TF |
Pathway information
