Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0331 ATGTCTCGTAATCTCAAACTCCATAAACTCGTATTCCTTCTCCTTCTCTTCTCCTTCTTCACTCCATCATTTTCAGATTCAATTCCAACTCCCATTTCCCCATGCGAATCTCAGCTCCAACAAGGTTGCCATGACAGAGTGAAGTCCCTGAAACTCAAGCTCATCGCCATCGCAGCCATTTTAGTCGCGAGCATGCTCGGCGTTTGTCTTCCCCTGTTCTCCCGCACGGTGCCGGTGCTTCAACCAGCGGGAAATCCCTTCACAATCGTCAAGGCATTTGCCTCCGGCGTGATTCTAGCCACCGGATATATGCACGTTTTGCCCGATTCCTTCGATTGCTTGACCTCCCCCTGTCTGCCGGAGAATCCATGGCGGAAATTCCCTTTCACCACATTCATAGCAATGCTTTCGGCTGTTATGACTCTAATGTTGGACTCGTTTTCGATGAGTCGCTACAAAAAGCAATTGATCGTGGATCAAGCTGCAGAAGAAGGGAATAACGAGGACAAGGAAATGGGTGACAATTTGGGGAAAGAAGAAGGAATCGATCATAAAATTGGAGCGCAATTGCTACGACACCGTGTGGTTGCGCAATTGTTAGAAGCGGGGATTGTGGTGCATTCGGTGGTGATAGGGCTTTCGATGGGGGCTTCGGATAATCCTTGCACCATAAGGCCGCTCATTGCGGCGCTCTGCTTTCATCAGCTCTTTGAAGGGATGGGGCTTGGAGGGTGCATTTTGCAGGCGGAATATAGGTTGAAGATGAAGATGATAATGGTATTTTTCTTCTCGATCACGACTCCATTTGGAATAGCATTGGGGATTGGATTGGCGAATGTGTACAGTGAGAATAGTCCCACAGCTCTTATAGTTGTGGGGATATTGAATGCTGTGTCTGCTGGGTTGCTGAATTACATGGCGTTGGTTGATTTGTTGGCGTATGATTTCATGGGGGCTAAGTTGCAAGGCAATCTCAAGCTTCACATATGGGCTTACGTTGCGGTTTTGTTGGGCGTTGGAGGCATGTCTTTGATGGCAAAATGGGCTTAG 1050 48.1 MSRNLKLHKLVFLLLLFSFFTPSFSDSIPTPISPCESQLQQGCHDRVKSLKLKLIAIAAILVASMLGVCLPLFSRTVPVLQPAGNPFTIVKAFASGVILATGYMHVLPDSFDCLTSPCLPENPWRKFPFTTFIAMLSAVMTLMLDSFSMSRYKKQLIVDQAAEEGNNEDKEMGDNLGKEEGIDHKIGAQLLRHRVVAQLLEAGIVVHSVVIGLSMGASDNPCTIRPLIAALCFHQLFEGMGLGGCILQAEYRLKMKMIMVFFFSITTPFGIALGIGLANVYSENSPTALIVVGILNAVSAGLLNYMALVDLLAYDFMGAKLQGNLKLHIWAYVAVLLGVGGMSLMAKWA 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2906363 2907412 + Maker00012005 Lcy1g0331 622243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0331 349 PANTHER ZINC/IRON TRANSPORTER 49 348 - GO:0005385(PANTHER)|GO:0005886(PANTHER)|GO:0016020(PANTHER)|GO:0071577(PANTHER)
Lcy1g0331 349 Pfam ZIP Zinc transporter 50 346 IPR003689 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
Lcy1g0331 349 NCBIfam ZIP zinc/iron transport family 35 349 IPR004698 GO:0005385(InterPro)|GO:0016020(InterPro)|GO:0071577(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0331 Lcy-Chr1:2906363 Lcy5g1554 Lcy-Chr5:36872847 3.12E-128 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0331 K14709 - csv:101204028 519.62