Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0336 ATGGACGACAACATCAACAACAACAACAGCCACCATGATCTTCCCCCGTTCCCCTCCGCCGCCGCCATTCCCTCCGCCATTCTCCTCTCTCCTCCTCAAAATTCCCATGTCCCTATTCTTCCCCAACCGCCCTTGGGATTCTCCTCGAGTGCTCCACAATCCTTCTTCTTTACAAATCCTCTTCACGAGCAACTCCCCTCTGCCCATTTTCCTCCTTCGTTTCTCTCCTATGCCTTCCCTCTTGGGAACGAGCTTACAAATTCTCTATTGCCCAAAGATGAAGGGAGAAGGGTTTTGGATGCTTGGAGTACTAAAGTGGCCAGAAGTAAGAGAAGGCTCGCTCGCCAAAGAAGCCTTAGTTTGAGTAAAACTTCTTCTTCTTCTTCTTCTTCTGGGTTTGGTTGTAACGGCGATGAATATTCTAAGGGAACGACAATAACCCATTACCCAAACACTGATTCATCCAACAGAAGCAACACCCTTTTTACCTTCTGCACTCCAGATAAGAAGATGATTTTGAGAATGTTGCTGAAGAAAGAGCTGAAGAACAGTGATGTTGGGTCTTTGGGCAGGATTGTCCTCCCCAAGAGGGAGGCTGAAGAGAACCTTCCATTGCTGACTGATAAGGAAGGAATGCAAGTTGTGATAAGAGATGTGAACTCCAACAGAAAATGGGCCATGAAATACAAGTACTGGGCAAACAACAGAAGTAGAATGTATGTTCTGGAAAACACAGGGGATTTTGTTAAACAAAATGGGCTGTTGATGGGAGATTCAATGACCCTTTACGAGGATGAGTGCAAGAACCTCTACGTGTCGGTTGAAAGAGGTGAGAATCATTCAAGTGTGGAAGAAAATTACGAGATAAGGAACCAACACTCATCAACAGCAACAGCAGCAGCAGCAGCAGCTTACACAAACATGAACATTAAAGACGAAGAAGAGGAAGCATCTTTAGCTCTGTTGATAGAAGAGCTCAAACACAAACCTGAAGAAGACGACCTGGAACAACAGCCCTGCAACAACAACGACAATCTGGTAGTTTCACAAAGCTCAGATTCATACTTTGAAAGAGGTGGATGCAGCTACAATAATATGATCAACACTACTCCTCGACGGGCATCCTCCAACATGGCTGGAAAAGGAAATATTAGTAGGAAGGAAGTGGAAGATTTGCAGGCCATTAATGGTTTTGAAGATTGCTTTGGAGGCCTCGATACTCTGCCTGAAGTTAGTGGATTCAAGTTCCCTCTTTTTGACTGCTTGAACAATGACAGAACGTGA 1284 44.86 MDDNINNNNSHHDLPPFPSAAAIPSAILLSPPQNSHVPILPQPPLGFSSSAPQSFFFTNPLHEQLPSAHFPPSFLSYAFPLGNELTNSLLPKDEGRRVLDAWSTKVARSKRRLARQRSLSLSKTSSSSSSSGFGCNGDEYSKGTTITHYPNTDSSNRSNTLFTFCTPDKKMILRMLLKKELKNSDVGSLGRIVLPKREAEENLPLLTDKEGMQVVIRDVNSNRKWAMKYKYWANNRSRMYVLENTGDFVKQNGLLMGDSMTLYEDECKNLYVSVERGENHSSVEENYEIRNQHSSTATAAAAAAYTNMNIKDEEEEASLALLIEELKHKPEEDDLEQQPCNNNDNLVVSQSSDSYFERGGCSYNNMINTTPRRASSNMAGKGNISRKEVEDLQAINGFEDCFGGLDTLPEVSGFKFPLFDCLNNDRT 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2971125 2975641 + Maker00011744 Lcy1g0336 622248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0336 427 SUPERFAMILY DNA-binding pseudobarrel domain 176 274 IPR015300 -
Lcy1g0336 427 CDD SP5_N 9 73 - -
Lcy1g0336 427 Gene3D - 168 287 IPR015300 -
Lcy1g0336 427 MobiDBLite consensus disorder prediction 118 134 - -
Lcy1g0336 427 CDD B3_DNA 176 276 IPR003340 GO:0003677(InterPro)
Lcy1g0336 427 Pfam B3 DNA binding domain 179 276 IPR003340 GO:0003677(InterPro)
Lcy1g0336 427 SMART B3_2 177 278 IPR003340 GO:0003677(InterPro)
Lcy1g0336 427 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 128 307 IPR044800 GO:0003700(InterPro)
Lcy1g0336 427 ProSiteProfiles B3 DNA-binding domain profile. 177 278 IPR003340 GO:0003677(InterPro)
Lcy1g0336 427 MobiDBLite consensus disorder prediction 113 134 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0336 Lcy-Chr1:2971125 Lcy3g1405 Lcy-Chr3:40643074 1.08E-30 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19508 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0336 K09287 - csv:105436043 397.127