Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0342 ATGGACGAAGAGGCTAATTCTTGGCTCAGGAGAACCAAGTTTTCTCACACAGTTTATCATCGATGGGACTCATTAAGATTGAACCCTGTTCCTTTCATTGTCGAACCACCTCACAATTCCGGCTTGAAATCGAGGCCTCAATCAGCTTCATCCGCTCAGAAACCATGTCCTGATATTTCCAAGATTCAACGAAATTACGTATCCAACAAGCAGAGGTCTCTGTCTCCTCTTCCCGAGAGCAACCTCTCTGACGTTTTCAAGGAAGCAAAATCTGAGAGTAAGAGATTCTCAACTCCAACTCCTCGACTTAGAGAACGAACTAGGGAATTCAAGAACAAGTTATTCAACAAGGATCCTCAAGATTCAAAACCGCCCAATTTTAAGCCATCGTTGAATACTAGTCCCCTGAAACACCTAGCTTCCGCGAAAGGGGGTGATAAGTCAAAGTTCAGGAAGGACTCTTCCTGGACCAAATATTTTGAGCCTGGTGGTGGAAGAGTTACCGCGGTTGAATCGGCCGATGACTGGAGTGTTGATCTCTCCAAGTTGTTTCTCGGGTTAAGGTTTGCTCATGGAGCTCACAGTCGTCTTTATCATGGAAAATACAATGATGAACCTGTTGCTGTTAAGATTATTAGAGTGCCTGAGGACGATGAAAATGGAGCGCTTGCTTCTCGATTGGAGAAGCAATTCACCAGAGAAGTTACCCTTTTATCTCGTCTCCATCATCCGAATGTTATAAAGTTTGTAGCTGCGTGTAGGAAGCCACCAGTTTACTGTGTCATTACTGAATATTTGTCTCAAGGATCATTAAGGGCATACTTACACAAACTTGAGCACCAATGTCTTCCTTTGCAAAAACTAATTGCAATTGCTTTAGATGTCGCTCGTGGCATGGAATACATTCACTCACAAGGCATAATACATCGCGATTTAAAGCCTGAGAATGTTCTTATTGGCGAGGACTTCCACCTGAAAATTGCAGATTTTGGTATAGCTTGTCCTGAGGCCTTTTTTGACCCATTAGCCGATGATCCTGGAACTTACCGATGGATGGCACCGGAGATGATCAAACATAAACCTTATGGTCGGAAGGTCGATGTATACAGCTTTGGGCTTATGTTGTGGGAAATGGTGGCTGGTGCAATTCCTTACGAGGATATGACTCCCATTCAAGCAGCCTTTGCTGTTGTGAATAAGATTAGATGGGTGCACATAGAAATGGGTATGGCAATTCGCCAGTATCTTGGTGAAAATAGCTATGCAGGTTATTGGTTAGATACCCCAAGTTTCTTTATGAATCTTAGGCCTGTTATCTCAAGTGACTGTCCATTGGCAATGCGAGCTTTAATCGAGCAATGTTGGTCCCTGCAACCGGAGAAGAGACCCGATTTCTGGCAAATTGTGAAGGTATTAGAGCAATTCGAGTCTTCGCTTGCCCGTGATGGGACACTGAATTTAATAGGGAACCCTCTGTCTAGTTTTCAAGACCATAAGAAAGGGCTTCTCCATTGGATTCAAAAGCTTGGCCCCCTGCATCCCGAAACCTCGCCCGTGCCAAAACCGAAATTCTCATAA 1578 44.04 MDEEANSWLRRTKFSHTVYHRWDSLRLNPVPFIVEPPHNSGLKSRPQSASSAQKPCPDISKIQRNYVSNKQRSLSPLPESNLSDVFKEAKSESKRFSTPTPRLRERTREFKNKLFNKDPQDSKPPNFKPSLNTSPLKHLASAKGGDKSKFRKDSSWTKYFEPGGGRVTAVESADDWSVDLSKLFLGLRFAHGAHSRLYHGKYNDEPVAVKIIRVPEDDENGALASRLEKQFTREVTLLSRLHHPNVIKFVAACRKPPVYCVITEYLSQGSLRAYLHKLEHQCLPLQKLIAIALDVARGMEYIHSQGIIHRDLKPENVLIGEDFHLKIADFGIACPEAFFDPLADDPGTYRWMAPEMIKHKPYGRKVDVYSFGLMLWEMVAGAIPYEDMTPIQAAFAVVNKIRWVHIEMGMAIRQYLGENSYAGYWLDTPSFFMNLRPVISSDCPLAMRALIEQCWSLQPEKRPDFWQIVKVLEQFESSLARDGTLNLIGNPLSSFQDHKKGLLHWIQKLGPLHPETSPVPKPKFS 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3064777 3069181 + Maker00011725 Lcy1g0342 622254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0342 525 Gene3D Transferase(Phosphotransferase) domain 1 268 493 - -
Lcy1g0342 525 PANTHER SERINE-THREONINE PROTEIN KINASE 68 474 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Lcy1g0342 525 FunFam Serine/threonine-protein kinase isoform 1 173 267 - -
Lcy1g0342 525 PRINTS Tyrosine kinase catalytic domain signature 366 388 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0342 525 PRINTS Tyrosine kinase catalytic domain signature 263 276 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0342 525 PRINTS Tyrosine kinase catalytic domain signature 347 357 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0342 525 PRINTS Tyrosine kinase catalytic domain signature 301 319 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0342 525 ProSitePatterns Serine/Threonine protein kinases active-site signature. 307 319 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0342 525 MobiDBLite consensus disorder prediction 38 59 - -
Lcy1g0342 525 MobiDBLite consensus disorder prediction 123 137 - -
Lcy1g0342 525 MobiDBLite consensus disorder prediction 71 151 - -
Lcy1g0342 525 SMART serkin_6 183 475 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0342 525 Pfam Protein kinase domain 192 470 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0342 525 MobiDBLite consensus disorder prediction 41 59 - -
Lcy1g0342 525 ProSiteProfiles Protein kinase domain profile. 183 476 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0342 525 Gene3D Phosphorylase Kinase; domain 1 171 267 - -
Lcy1g0342 525 MobiDBLite consensus disorder prediction 85 118 - -
Lcy1g0342 525 CDD STKc_MAP3K-like 190 472 - -
Lcy1g0342 525 SUPERFAMILY Protein kinase-like (PK-like) 170 473 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0342 Lcy-Chr1:3064777 Lcy1g0478 Lcy-Chr1:4194078 5.29E-102 dispersed
Lcy1g0342 Lcy-Chr1:3064777 Lcy5g1875 Lcy-Chr5:41596723 1.18E-228 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65611 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0342 - - - 0.0