Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0371 ATGGGTCGTGCAAATTGGAATTTGTTCATGAAGATCCTTGTTGGTCTGCTCTTGGTCTCGATGAAGCCCTTTTGCTTTGGAGATACTGACCTCCGCGATGTTGCTGCAATCAATGCATTATTTATTTCTCTTGGCTACCCTCCTTTGCGAGGATGGATTCTTGTTGGAGGTGATCCATGTGGGGAGAAGTGGCAAGGGGTTGAATGTGTATTCTCAAATATAACAGCGATACAACTCAGTGGCTTGAATTTGGGAGGAGAGCTAGGCACTAGCTTGGACCAATTCGAGTCAATAATATCAATGGATCTCAGCAACAACCATATTGGAGGGAATATTCCGTCTACATTGCCCGCTACTCTGAGAAGTTTTTCTTTGTCAGCTAATCAGTTCACTGGAAGCATTCCCTCTGCACTGGCCTCGTTAACACAATTGATGGACCTGTCATTAAACAACAACCTTCTTACCGGGGTAATACCTGATGTCTTCCAGCAACTTAATGGCTTGAATATCTTGAATATAGAGAACAACCTATTTTCTGGACCTATACCTGCAAAGTTGTTGGGCATTCCAAATTTCAGAAAAGAGGGAAACCCTTTTAATACTACGATAATTCCATCTGCACCTGCTTTAGCCCCTTCACCATTTGCTGTGGCACCAGTGATTGTGGGACAACCAGCCAGACAGACAGGTGCAGGTCAGCCATTGTCATCAGGAACTCCTGAATCAGATGGAGCAAGGAGTTTTTTCTCTGCTAAGCGGATCATTTGGATTGTTATAATTGGCACTGTAATACTAGTGGCATTGGGATTCTGTCTTCTTGTGTCGATATGCTTGAAAAGAAGCAAGCATCGAGAAGACACCAAGATGGTTCGTGACGATAATGATATGTCTTCTAAATATAAACCTAAACCCACGAAGCCCTCGGTTGAAATTGATGACATGGAGAAAGGTCAAAGGGAGACCACTCTTAAGCCACTTGAAAGAGACAGAGTGAAGGATAGCATAATGGATTTTACCACCCCAAGGCTACATGATAGACTGGAGGCAAATGGGAAAAGAAGAGATGCCTCTAGTACGAGTTTTCGTAAAAACCATACAGAGAGTTCAAGCATAAGCATGGATGACTTCCCTGTACCGCCTCCTCCACCTCCTTTTCCGCTCCTTTCAACACAGGAGATTGCAAAACCAATTGTGGCAGCTGAAGTATCTAGTAGAGTACCTAAAAAACTGAACTCAAGTTCTTTAAAAGTTTTCACGATTGCATCACTTCAGCAGTATACTAATAGTTTCTCTGAAGACAATCTTCTTGGGAGAGGCATGTTTGGCAGTGTCTATAGAGCTGAACTTCCAAGTGGAAGGCTTCTGGCTGTTAAAAAACTGAGTGGATCCTCCTCGATGCGTTGGGATGACGATGAATTTCACAGCCTCGTATCTAATATATGCAAAATTCGGCATGATAACATTGTGGAGCTTGTGGGCTATTGTGCTGAGCATGGACAATATCTACTCATTTATGAGTATTGCAAAAATGGCACACTCTATGATGCACTCCATGTCGACAAGGAGATGCATCAAAAGCTTTCGTGGAATGTACGCGTGAGGATTGCACTTGGAGCTGCAAGAGCGCTTGAGTATCTGCATGAGGCCTGTCAACCACCTATCATGCACCAAAATTTTAAGTCTGCTAACATTCTCTTGGACAATGAGTTAAAGGCGCAGGTCTCTGACTCTGGCTTAGCTCCGCTGCTTTCTTCAGCTAATCAGTCGTCTGCGCGTTTCGTCCCAGCTCATGGTTATAGTGCTCCTGAATTTGAGTCAGGAACTTACACGTACCAAAGTGATATCTTTAGCTTCGGAGTTGTAATGCTAGAGCTTCTCACTGGCCGGAAGTCGTGTGACCGATCACTACCTCGAGGAGAGCAATTTCTTGTTCGATGGGCTGTTCCAAGGCTCCATGACATCGATGCGTTATCAAGAATGGTCGATCCATATCTTAATGGCACGTATCCCATTAAGTCGTTATCGCGCTTTGCTGATATTATTTCCTCTTGTATAATGGTAAATTTCTCTACAACTTTTGCTTCATATCCAAGTTACTATGAATATTTACTTGTCTTTACTGATGTTTTCAACCAACCTTTTGGCAGAGAGAGCCCGAATTTCGGCCCCCGATCTCTGAAATCGTACAGGAACTCTTACAAATGCTCTAGAAGAAAGTCAGATATTGAAATGCTTTGGGAGCTTGGTAGAAGATCAGACAAGATGTTGAACATCAAAATTGGTAACCAAAAAGTTTTAGGAGTAGATCTCACTATATTTTTCTCTTTGGGCAAAGAGGCATGCTTTTAG 2349 43.0 MGRANWNLFMKILVGLLLVSMKPFCFGDTDLRDVAAINALFISLGYPPLRGWILVGGDPCGEKWQGVECVFSNITAIQLSGLNLGGELGTSLDQFESIISMDLSNNHIGGNIPSTLPATLRSFSLSANQFTGSIPSALASLTQLMDLSLNNNLLTGVIPDVFQQLNGLNILNIENNLFSGPIPAKLLGIPNFRKEGNPFNTTIIPSAPALAPSPFAVAPVIVGQPARQTGAGQPLSSGTPESDGARSFFSAKRIIWIVIIGTVILVALGFCLLVSICLKRSKHREDTKMVRDDNDMSSKYKPKPTKPSVEIDDMEKGQRETTLKPLERDRVKDSIMDFTTPRLHDRLEANGKRRDASSTSFRKNHTESSSISMDDFPVPPPPPPFPLLSTQEIAKPIVAAEVSSRVPKKLNSSSLKVFTIASLQQYTNSFSEDNLLGRGMFGSVYRAELPSGRLLAVKKLSGSSSMRWDDDEFHSLVSNICKIRHDNIVELVGYCAEHGQYLLIYEYCKNGTLYDALHVDKEMHQKLSWNVRVRIALGAARALEYLHEACQPPIMHQNFKSANILLDNELKAQVSDSGLAPLLSSANQSSARFVPAHGYSAPEFESGTYTYQSDIFSFGVVMLELLTGRKSCDRSLPRGEQFLVRWAVPRLHDIDALSRMVDPYLNGTYPIKSLSRFADIISSCIMVNFSTTFASYPSYYEYLLVFTDVFNQPFGRESPNFGPRSLKSYRNSYKCSRRKSDIEMLWELGRRSDKMLNIKIGNQKVLGVDLTIFFSLGKEACF 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3299577 3304595 + Maker00012031 Lcy1g0371 622283

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0371 782 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 30 171 - -
Lcy1g0371 782 Pfam Leucine rich repeat 119 177 IPR001611 GO:0005515(InterPro)
Lcy1g0371 782 SUPERFAMILY Protein kinase-like (PK-like) 407 689 IPR011009 -
Lcy1g0371 782 Gene3D Transferase(Phosphotransferase) domain 1 508 691 - -
Lcy1g0371 782 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 398 507 - -
Lcy1g0371 782 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 33 686 IPR046959 -
Lcy1g0371 782 SUPERFAMILY L domain-like 35 192 - -
Lcy1g0371 782 ProSiteProfiles Protein kinase domain profile. 430 703 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0371 782 Gene3D Phosphorylase Kinase; domain 1 394 507 - -
Lcy1g0371 782 MobiDBLite consensus disorder prediction 342 378 - -
Lcy1g0371 782 Pfam Leucine Rich Repeat 98 116 IPR001611 GO:0005515(InterPro)
Lcy1g0371 782 Pfam Protein tyrosine and serine/threonine kinase 434 630 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0371 782 Gene3D Ribonuclease Inhibitor 44 201 IPR032675 -
Lcy1g0371 782 ProSitePatterns Protein kinases ATP-binding region signature. 436 459 IPR017441 GO:0005524(InterPro)
Lcy1g0371 782 MobiDBLite consensus disorder prediction 288 328 - -
Lcy1g0371 782 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 508 692 - -
Lcy1g0371 782 MobiDBLite consensus disorder prediction 342 361 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0371 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0371 Lcy-Chr1:3299577 Lcy5g1479 Lcy-Chr5:35449049 1.11E-103 dispersed
Lcy1g0371 Lcy-Chr1:3299577 Lcy4g0624 Lcy-Chr4:7445231 1.55E-136 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy4g0624 . 2 672 Strubbelig Receptor Gene Family AT4G03390 56.6 2.3e-184 643.3
Lcy3g2287 . 431 734 Strubbelig Receptor Gene Family AT4G03390 57.4 1.6e-92 338.2
Lcy5g0631 . 9 708 Strubbelig Receptor Gene Family AT5G06820 51.8 2.5e-196 682.9
Lcy10g0819 . 10 696 Strubbelig Receptor Gene Family AT1G78980 59.2 1.0e-186 651.0
Lcy13g0086 . 156 838 Strubbelig Receptor Gene Family AT1G78980 51.5 2.2e-149 526.9
Lcy3g2287 . 81 737 Strubbelig Receptor Gene Family AT1G78980 51.7 4.2e-124 443.0
Lcy10g0819 . 4 673 Strubbelig Receptor Gene Family AT3G13065 51.3 4.3e-142 502.7
Lcy3g2287 . 81 732 Strubbelig Receptor Gene Family AT3G13065 50.8 1.8e-100 364.4
Lcy5g1479 . 446 739 Strubbelig Receptor Gene Family AT1G11130 53.4 6.4e-85 312.8
Lcy5g0631 . 9 708 Strubbelig Receptor Gene Family AT5G06820 51.8 2.5e-196 682.9
Lcy4g0624 . 2 672 Strubbelig Receptor Gene Family AT4G03390 56.6 2.3e-184 643.3
Lcy3g2287 . 431 734 Strubbelig Receptor Gene Family AT4G03390 57.4 1.6e-92 338.2
Lcy10g0819 . 4 673 Strubbelig Receptor Gene Family AT3G13065 51.3 4.3e-142 502.7
Lcy3g2287 . 81 732 Strubbelig Receptor Gene Family AT3G13065 50.8 1.8e-100 364.4
Lcy10g0819 . 10 696 Strubbelig Receptor Gene Family AT1G78980 59.2 1.0e-186 651.0
Lcy13g0086 . 156 838 Strubbelig Receptor Gene Family AT1G78980 51.5 2.2e-149 526.9
Lcy3g2287 . 81 737 Strubbelig Receptor Gene Family AT1G78980 51.7 4.2e-124 443.0
Lcy13g0086 . 149 831 Strubbelig Receptor Gene Family AT1G53730 60.9 1.7e-205 713.4
Lcy3g2287 . 60 745 Strubbelig Receptor Gene Family AT1G53730 60.9 6.1e-179 625.2
Lcy10g0819 . 5 681 Strubbelig Receptor Gene Family AT1G53730 50.7 5.5e-156 548.9
Lcy13g0086 . 157 835 Strubbelig Receptor Gene Family AT3G14350 52.3 3.8e-178 622.5
Lcy3g2287 . 80 743 Strubbelig Receptor Gene Family AT3G14350 56.8 5.7e-158 555.4
Lcy5g1479 . 394 770 Strubbelig Receptor Gene Family AT4G22130 82.0 1.4e-175 613.6
Lcy13g0086 . 519 847 Strubbelig Receptor Gene Family AT4G22130 63.7 2.9e-120 429.9
Lcy3g2287 . 438 751 Strubbelig Receptor Gene Family AT4G22130 65.8 2.1e-118 423.7
Lcy4g0624 . 369 664 Strubbelig Receptor Gene Family AT4G22130 62.0 2.4e-106 383.6
Lcy10g0819 . 350 695 Strubbelig Receptor Gene Family AT4G22130 53.1 7.5e-100 362.1
Lcy5g0631 . 360 682 Strubbelig Receptor Gene Family AT4G22130 52.9 6.1e-94 342.4
Lcy1g0371 . 418 685 Strubbelig Receptor Gene Family AT4G22130 59.3 1.7e-88 324.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007627 1 3 1 0 1 0 2 0 0 1 1 0 1 1 1 1 0 2 1 0 1 1 1 1 1 1 1 0 1 0 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65612 None None None None Lcy PK