Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0371 ATGGGTCGTGCAAATTGGAATTTGTTCATGAAGATCCTTGTTGGTCTGCTCTTGGTCTCGATGAAGCCCTTTTGCTTTGGAGATACTGACCTCCGCGATGTTGCTGCAATCAATGCATTATTTATTTCTCTTGGCTACCCTCCTTTGCGAGGATGGATTCTTGTTGGAGGTGATCCATGTGGGGAGAAGTGGCAAGGGGTTGAATGTGTATTCTCAAATATAACAGCGATACAACTCAGTGGCTTGAATTTGGGAGGAGAGCTAGGCACTAGCTTGGACCAATTCGAGTCAATAATATCAATGGATCTCAGCAACAACCATATTGGAGGGAATATTCCGTCTACATTGCCCGCTACTCTGAGAAGTTTTTCTTTGTCAGCTAATCAGTTCACTGGAAGCATTCCCTCTGCACTGGCCTCGTTAACACAATTGATGGACCTGTCATTAAACAACAACCTTCTTACCGGGGTAATACCTGATGTCTTCCAGCAACTTAATGGCTTGAATATCTTGAATATAGAGAACAACCTATTTTCTGGACCTATACCTGCAAAGTTGTTGGGCATTCCAAATTTCAGAAAAGAGGGAAACCCTTTTAATACTACGATAATTCCATCTGCACCTGCTTTAGCCCCTTCACCATTTGCTGTGGCACCAGTGATTGTGGGACAACCAGCCAGACAGACAGGTGCAGGTCAGCCATTGTCATCAGGAACTCCTGAATCAGATGGAGCAAGGAGTTTTTTCTCTGCTAAGCGGATCATTTGGATTGTTATAATTGGCACTGTAATACTAGTGGCATTGGGATTCTGTCTTCTTGTGTCGATATGCTTGAAAAGAAGCAAGCATCGAGAAGACACCAAGATGGTTCGTGACGATAATGATATGTCTTCTAAATATAAACCTAAACCCACGAAGCCCTCGGTTGAAATTGATGACATGGAGAAAGGTCAAAGGGAGACCACTCTTAAGCCACTTGAAAGAGACAGAGTGAAGGATAGCATAATGGATTTTACCACCCCAAGGCTACATGATAGACTGGAGGCAAATGGGAAAAGAAGAGATGCCTCTAGTACGAGTTTTCGTAAAAACCATACAGAGAGTTCAAGCATAAGCATGGATGACTTCCCTGTACCGCCTCCTCCACCTCCTTTTCCGCTCCTTTCAACACAGGAGATTGCAAAACCAATTGTGGCAGCTGAAGTATCTAGTAGAGTACCTAAAAAACTGAACTCAAGTTCTTTAAAAGTTTTCACGATTGCATCACTTCAGCAGTATACTAATAGTTTCTCTGAAGACAATCTTCTTGGGAGAGGCATGTTTGGCAGTGTCTATAGAGCTGAACTTCCAAGTGGAAGGCTTCTGGCTGTTAAAAAACTGAGTGGATCCTCCTCGATGCGTTGGGATGACGATGAATTTCACAGCCTCGTATCTAATATATGCAAAATTCGGCATGATAACATTGTGGAGCTTGTGGGCTATTGTGCTGAGCATGGACAATATCTACTCATTTATGAGTATTGCAAAAATGGCACACTCTATGATGCACTCCATGTCGACAAGGAGATGCATCAAAAGCTTTCGTGGAATGTACGCGTGAGGATTGCACTTGGAGCTGCAAGAGCGCTTGAGTATCTGCATGAGGCCTGTCAACCACCTATCATGCACCAAAATTTTAAGTCTGCTAACATTCTCTTGGACAATGAGTTAAAGGCGCAGGTCTCTGACTCTGGCTTAGCTCCGCTGCTTTCTTCAGCTAATCAGTCGTCTGCGCGTTTCGTCCCAGCTCATGGTTATAGTGCTCCTGAATTTGAGTCAGGAACTTACACGTACCAAAGTGATATCTTTAGCTTCGGAGTTGTAATGCTAGAGCTTCTCACTGGCCGGAAGTCGTGTGACCGATCACTACCTCGAGGAGAGCAATTTCTTGTTCGATGGGCTGTTCCAAGGCTCCATGACATCGATGCGTTATCAAGAATGGTCGATCCATATCTTAATGGCACGTATCCCATTAAGTCGTTATCGCGCTTTGCTGATATTATTTCCTCTTGTATAATGGTAAATTTCTCTACAACTTTTGCTTCATATCCAAGTTACTATGAATATTTACTTGTCTTTACTGATGTTTTCAACCAACCTTTTGGCAGAGAGAGCCCGAATTTCGGCCCCCGATCTCTGAAATCGTACAGGAACTCTTACAAATGCTCTAGAAGAAAGTCAGATATTGAAATGCTTTGGGAGCTTGGTAGAAGATCAGACAAGATGTTGAACATCAAAATTGGTAACCAAAAAGTTTTAGGAGTAGATCTCACTATATTTTTCTCTTTGGGCAAAGAGGCATGCTTTTAG 2349 43.0 MGRANWNLFMKILVGLLLVSMKPFCFGDTDLRDVAAINALFISLGYPPLRGWILVGGDPCGEKWQGVECVFSNITAIQLSGLNLGGELGTSLDQFESIISMDLSNNHIGGNIPSTLPATLRSFSLSANQFTGSIPSALASLTQLMDLSLNNNLLTGVIPDVFQQLNGLNILNIENNLFSGPIPAKLLGIPNFRKEGNPFNTTIIPSAPALAPSPFAVAPVIVGQPARQTGAGQPLSSGTPESDGARSFFSAKRIIWIVIIGTVILVALGFCLLVSICLKRSKHREDTKMVRDDNDMSSKYKPKPTKPSVEIDDMEKGQRETTLKPLERDRVKDSIMDFTTPRLHDRLEANGKRRDASSTSFRKNHTESSSISMDDFPVPPPPPPFPLLSTQEIAKPIVAAEVSSRVPKKLNSSSLKVFTIASLQQYTNSFSEDNLLGRGMFGSVYRAELPSGRLLAVKKLSGSSSMRWDDDEFHSLVSNICKIRHDNIVELVGYCAEHGQYLLIYEYCKNGTLYDALHVDKEMHQKLSWNVRVRIALGAARALEYLHEACQPPIMHQNFKSANILLDNELKAQVSDSGLAPLLSSANQSSARFVPAHGYSAPEFESGTYTYQSDIFSFGVVMLELLTGRKSCDRSLPRGEQFLVRWAVPRLHDIDALSRMVDPYLNGTYPIKSLSRFADIISSCIMVNFSTTFASYPSYYEYLLVFTDVFNQPFGRESPNFGPRSLKSYRNSYKCSRRKSDIEMLWELGRRSDKMLNIKIGNQKVLGVDLTIFFSLGKEACF 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3299577 3304595 + Maker00012031 Lcy1g0371 622283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0371 782 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 30 171 - -
Lcy1g0371 782 Pfam Leucine rich repeat 119 177 IPR001611 GO:0005515(InterPro)
Lcy1g0371 782 SUPERFAMILY Protein kinase-like (PK-like) 407 689 IPR011009 -
Lcy1g0371 782 Gene3D Transferase(Phosphotransferase) domain 1 508 691 - -
Lcy1g0371 782 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 398 507 - -
Lcy1g0371 782 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 33 686 IPR046959 -
Lcy1g0371 782 SUPERFAMILY L domain-like 35 192 - -
Lcy1g0371 782 ProSiteProfiles Protein kinase domain profile. 430 703 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0371 782 Gene3D Phosphorylase Kinase; domain 1 394 507 - -
Lcy1g0371 782 MobiDBLite consensus disorder prediction 342 378 - -
Lcy1g0371 782 Pfam Leucine Rich Repeat 98 116 IPR001611 GO:0005515(InterPro)
Lcy1g0371 782 Pfam Protein tyrosine and serine/threonine kinase 434 630 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0371 782 Gene3D Ribonuclease Inhibitor 44 201 IPR032675 -
Lcy1g0371 782 ProSitePatterns Protein kinases ATP-binding region signature. 436 459 IPR017441 GO:0005524(InterPro)
Lcy1g0371 782 MobiDBLite consensus disorder prediction 288 328 - -
Lcy1g0371 782 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 508 692 - -
Lcy1g0371 782 MobiDBLite consensus disorder prediction 342 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0371 Lcy-Chr1:3299577 Lcy5g1479 Lcy-Chr5:35449049 1.11E-103 dispersed
Lcy1g0371 Lcy-Chr1:3299577 Lcy4g0624 Lcy-Chr4:7445231 1.55E-136 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65612 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0371 - - - 0.0