Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0402 ACTTTGCACAAAAACAGAGCATGCAAACTTGATGATCAGAATCAAACATTCACGCAAGAAAAGGAATTCAGACGAATTGCCCTAGAAGACGAGATGATCAAGCACACAAGAAGAAGGAAGAAGATGAACACCAGAGGATTAACGTGGTTCGGCAACAATGGCCTACATCCACGATACAAGGGAGCTGATTTTATTTACAAGAATTACAGAGATGAAGCTGATTACAAGTCCAGCTTAAAGAAGCTTGGTGGTTACAACAGACTTACAGAAAAGGAATTCAGACGAATTGCCCTAGAAGACGAGATGATCAAGCACACAAGAAGAAGGAAGAAGATGAACACCAGAGGATTAACGTGGTTCGGCAACAATGGCCTACATCCACGATACAAGGGAGCTGATTTTATTTACAAGAATTACAGAGATGAAGCTGATTACAAGTCCAGCTTAAAGAAGCTTGGTGGTTACAACAGACTTACAGGTTGTAGTTGTGTTCTGAGAGATCTTGATATGGGTAGTAGCTGCAGAAAGGTTGCTGGGTTTCTTCAGTTCTTAGTCATTTCCTTCTTCCTCTGTTTTTCTCCTCTGTTTTGTGGCGCTGCAAATTCAATCACAAGGGGCAGAGAGATAAGAGACGGTACTAACGAAACCCTTATATCCGCGAATGAGCACTATCAGCTGGGATTCTTCAGCCCCAAAAACTCTTCATCACGATACGTTGGGATATGGTATCGCAAGATCGAGGAACAGTCGGTTTTTTGGGTTGCAAATAGAGATGCGCCACTTCTTAATAGAGAAGGGGTTTTGAAAATCGGAGACGATGGAAATTTGGTCGTTCTTGACGGCAACAATGTCTCTCTTTGGACAAGCAACATCACAGCGAATGCGTCTGATCCCAGAAACTTAACTCTGCATAACAATGGAGAATTGATTCTCTCGAGCGGAGAGGACTCGTCGAAAGTCCATTGGAGCAGCTTCGAACACCCCACAGATACATTTCTTCCGAATATGGAGGTGAAGGTGAACGCGGATATGGGTGAAAAACGGATTTTTATGTCTTGGACATCAGAGACAAATCCGGCCGTCGGAAATTACTGTTTGGGTCTGGATCCTCGTGGAGCCGTACAGATTATTATTTGGAATGGGAAAGATCGATGGTGGAGAAGCGGCCACTGGGATAAGCAGATTTTTTCTGGGGTTCCAAACATGCGTTCTACGTCGTGGTACGGTTTCAAGGTTAACACTGAACGTCGAGACGAAATAACTGTAAATTTTCATCCATTGAATAACTCCGATGAGCTGAAATTTCAAATACGGTGGGATGGTAAAGAAGCACAGCAGCGATGGAACGAAGCGAGTCGCGAATGGGATACTATTCGCTTACTGCCTTCTAACGATTGCGATTTCTATAATTTTTGTGGGGATTTTGGGGTTTGTTCTGAAACGAGTCACCCCAAGTGTAGTTGCCTTCCAGGGTTTGTACCCAAAAACAACGATCGATGGAACAAACAGAATTGGTCCGATGGGTGCCAGAGAAGGACTCCGTTGCTTCAGCAAAGGAGGAACAGTCATCCGAATGGAACTGCTGAGGACGGTGAGGAAGATGGGTTTACAGCTCTACAGTCTGTGAAATTGCCCGATTTCATAACTGGAGTATTTGTGGACTCGTGTAGTGGTAGATGTTCGAACAGTTCTTCGTGTATTGCATATTCGGATGCTCCTGGAATTGGGTGCGTTACATGGGATGGACCTTTAATTGATATTCAGAAATTTGATGGTGTAGGGAATACTTTGAACATTCGTGTCGCTCATTCTGATTTAGAACCTGTAGATAGCAAGAGCAAATTGTCGGCCGGTGTGATAGTATTGATATGTTTAGGAGGAGCAGCTGCCATAGCCGCATTGGCATTGCTGCTATGGAAATTCAGAGGCAAAATGAAAGGTTCACCAGCTGCTGCTTCGAGTAAACCTCAGAACAACACTGAAGTACCAATGTTTGACCTGAGCAAGAGCAGAGAATTTTCAGCAGAACTTTCAGGGCCATACGAATTAAGCATAGAAGGAGGGCAACTGAGTGGACCAGATTTGCCAATGTTCAATTTCAACTGTATAGCTGTGGCTACTGACAACTTTTCTGAGGAAAACAAGCTTGGCCAGGGAGGTTTTGGCCCGGTATACAGGGGAAAGCTTCCAAGTGGACAAGAAATTGCCGTGAAGAGGCTCTCAGTTCGGTCTGGCCAAGGTCTAGAAGAGTTTAAGAATGAGATCATACTGATAGGAAAGTTGCAGCATCGAAACCTCGTCAGACTGTTGGGCTACTGCATTCAAGGAGAGGACAAGATGCTGCTCTATGAATATATGCCAAACAAAAGCTTGGATTGGTTTCTTTTCGATCCAAATAAGCAGGCTCTACTAGATTGGAAGAAACGGTTGTCAATCATCGAAGGAATAGCACGAGGGTTGCTGTACCTTCATAGAGACTCTAGACTTCTTATTATTCATAGAGATTTGAAAGCTAGCAACATTTTGCTTGATGAAGACATGAATCCAAAGATATCAGACTTTGGCATGGCTAGAATATTTGGTGGAAACCAAAACGAAGCAACAAATACAATTCGAGTTGTTGGAACATATGGTTATATGGCTCCAGAGTATGCAATGGAAGGTCTATTTTCGGTGAAATCAGATGTCTATAGTTTTGGCGTATTATTATTAGAATTGATATGTGGTCGGAGGAACACTAGCTTTCGCTCAACCGAATACTTAACCCTTATTGGCTATGCTTGGAATCTTTGGAATGATGGAAGATCGATTGAACTCCTCGACCCGTCTATTCGTGATTCATCGGTCGAGAATGAAGTATTGAAATGCATACATGTAGCAATGCTGTGTGTACAAGACTCCCCAGCTTATAGACCAACACTGCAGTCCGTAGTACTAATGCTGGAGAGTGAATCTACTTCTCTGCCACAGCCAAGACAACCCACCTATACTTCCACAAGAGCCTCCATCGATACAGACTTGTTTACAGAAGGCCACGACATTGTATCGTCAAACGACGTAACGGTAACAATGTTGGATGGTAGATAG 3087 43.47 TLHKNRACKLDDQNQTFTQEKEFRRIALEDEMIKHTRRRKKMNTRGLTWFGNNGLHPRYKGADFIYKNYRDEADYKSSLKKLGGYNRLTEKEFRRIALEDEMIKHTRRRKKMNTRGLTWFGNNGLHPRYKGADFIYKNYRDEADYKSSLKKLGGYNRLTGCSCVLRDLDMGSSCRKVAGFLQFLVISFFLCFSPLFCGAANSITRGREIRDGTNETLISANEHYQLGFFSPKNSSSRYVGIWYRKIEEQSVFWVANRDAPLLNREGVLKIGDDGNLVVLDGNNVSLWTSNITANASDPRNLTLHNNGELILSSGEDSSKVHWSSFEHPTDTFLPNMEVKVNADMGEKRIFMSWTSETNPAVGNYCLGLDPRGAVQIIIWNGKDRWWRSGHWDKQIFSGVPNMRSTSWYGFKVNTERRDEITVNFHPLNNSDELKFQIRWDGKEAQQRWNEASREWDTIRLLPSNDCDFYNFCGDFGVCSETSHPKCSCLPGFVPKNNDRWNKQNWSDGCQRRTPLLQQRRNSHPNGTAEDGEEDGFTALQSVKLPDFITGVFVDSCSGRCSNSSSCIAYSDAPGIGCVTWDGPLIDIQKFDGVGNTLNIRVAHSDLEPVDSKSKLSAGVIVLICLGGAAAIAALALLLWKFRGKMKGSPAAASSKPQNNTEVPMFDLSKSREFSAELSGPYELSIEGGQLSGPDLPMFNFNCIAVATDNFSEENKLGQGGFGPVYRGKLPSGQEIAVKRLSVRSGQGLEEFKNEIILIGKLQHRNLVRLLGYCIQGEDKMLLYEYMPNKSLDWFLFDPNKQALLDWKKRLSIIEGIARGLLYLHRDSRLLIIHRDLKASNILLDEDMNPKISDFGMARIFGGNQNEATNTIRVVGTYGYMAPEYAMEGLFSVKSDVYSFGVLLLELICGRRNTSFRSTEYLTLIGYAWNLWNDGRSIELLDPSIRDSSVENEVLKCIHVAMLCVQDSPAYRPTLQSVVLMLESESTSLPQPRQPTYTSTRASIDTDLFTEGHDIVSSNDVTVTMLDGR 1028
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3574770 3584169 + Maker00012039 Lcy1g0402 622314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0402 1028 CDD PAN_AP_plant 529 602 - -
Lcy1g0402 1028 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 676 785 - -
Lcy1g0402 1028 Pfam S-locus glycoprotein domain 386 496 IPR000858 GO:0048544(InterPro)
Lcy1g0402 1028 ProSitePatterns Serine/Threonine protein kinases active-site signature. 831 843 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0402 1028 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 191 994 - -
Lcy1g0402 1028 Pfam PAN-like domain 532 587 IPR003609 -
Lcy1g0402 1028 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 786 989 - -
Lcy1g0402 1028 Pfam Protein tyrosine and serine/threonine kinase 713 978 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0402 1028 Gene3D Phosphorylase Kinase; domain 1 684 785 - -
Lcy1g0402 1028 CDD B_lectin 212 328 IPR001480 -
Lcy1g0402 1028 MobiDBLite consensus disorder prediction 513 533 - -
Lcy1g0402 1028 ProSiteProfiles Protein kinase domain profile. 710 996 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0402 1028 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 195 325 - -
Lcy1g0402 1028 SMART blect_4 208 328 IPR001480 -
Lcy1g0402 1028 Pfam D-mannose binding lectin 251 353 IPR001480 -
Lcy1g0402 1028 Gene3D Transferase(Phosphotransferase) domain 1 786 999 - -
Lcy1g0402 1028 Pfam Domain of unknown function (DUF3403) 983 1028 IPR021820 GO:0004674(InterPro)
Lcy1g0402 1028 ProSiteProfiles Bulb-type lectin domain profile. 200 324 IPR001480 -
Lcy1g0402 1028 CDD STKc_IRAK 716 982 - -
Lcy1g0402 1028 SUPERFAMILY alpha-D-mannose-specific plant lectins 250 392 IPR036426 -
Lcy1g0402 1028 SUPERFAMILY Protein kinase-like (PK-like) 695 1005 IPR011009 -
Lcy1g0402 1028 ProSiteProfiles EGF-like domain profile. 462 498 IPR000742 -
Lcy1g0402 1028 Gene3D - 197 325 IPR036426 -
Lcy1g0402 1028 SMART serkin_6 710 981 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0402 Lcy-Chr1:3574770 Lcy5g1953 Lcy-Chr5:42349957 5.94E-231 dispersed
Lcy5g1957 Lcy-Chr5:42434157 Lcy1g0402 Lcy-Chr1:3574770 1.05E-14 dispersed
Lcy5g1996 Lcy-Chr5:42963896 Lcy1g0402 Lcy-Chr1:3574770 1.37E-55 dispersed
Lcy1g0402 Lcy-Chr1:3574770 Lcy1g0410 Lcy-Chr1:3640087 3.21E-97 proximal
Lcy1g0402 Lcy-Chr1:3574770 Lcy4g0596 Lcy-Chr4:7167896 1.69E-129 wgd
Lcy1g0402 Lcy-Chr1:3574770 Lcy5g1949 Lcy-Chr5:42303469 1.84E-29 wgd
Lcy1g0402 Lcy-Chr1:3574770 Lcy5g1147 Lcy-Chr5:24670694 9.41E-296 wgd
Lcy1g0402 Lcy-Chr1:3574770 Lcy9g1246 Lcy-Chr9:36981648 3.32E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65613 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0402 - - - 0.0