Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy1g0403 | ATGGCGGCTCCATTTCCGGATGATTTCAAGTGCCCAATTTCTCTGGAGATAATGTCGGACCCTGTAATACTCTCCTCCGGCCACACCTTTGATCGCTCTTCCATCCAACGCTGGCTCGACGCCGGTCACCGGACTTGCCCAATCACCCAGTTGCCCCTTCCTGAAAATCCTTCCCTAATCCCTAACCATGCCCTAAGAAGCTTAATTTCAAATTTCAACCCTGTTTCCCTTGCCAAGTCGTTTCTCCCTCATCCGCCGCCCCAAACCCTAATCTCGATTCTCGTCTCTCCTTCTTCTTCCCTCGATTCCAAGCTCGATTGCCTCAATCAACTCGCCAGGGTTTCAAAGCGCGATTCCGCTATGCGGAGAAGATTGACCGAGTCCGGTGCCGTCTCGGCCGTTCTTAAATGCGTCGGTTCTGACGATCCGAGCCTCCAAGAGAAGGCTCTGTCGCTGTTGTTGAATCTTAGTTTGGACGATGATAACAAAGTGGGTTTGGTTGCAGAAGGGGCTATTGGCCTCACCGTGGCTGCTCTTCAAGCCAGGTCCCCCGATTGCAGAGCCGTAGCCGCCACGATGCTGACGAGCTTAGCCGTGGTGGAGGTTAACAAGGCTACGATTGGGGCTTATCCGTACGCGATTCGTTCTCTTGTTTGTCTCTTACGGAACGGCAACAACAGAGAGCAGAAGGAAGCTGCAACTGCGCTTTACGCCATTTGTTCATTCCCAGGGAACCGTCTGCGGGCTGTGGAATGTGGGGCTGTTCCAATTTTGCTTAAAATTGCGAATTCTGGGCTGGATAGAGCAGTGGAGGTTCTGGGGCTTGTGGCCAAGTGTAGGGAAGGTCGAGAAGAGATGCAACGGTTCAATGGATGTGTGGAGATTTTGGGACGTGTGTTGAGAAATGGAGCCCCAAGAGGAGTTCAATATGCTCTTCTAACTCTGAGTTCTCTCTGCTGCCACAGCGAGCGAATGTGCGTGGAGGCCAGAAGAGAAGGCGTTTTGGGAATCTGTATGACATTGATTGATGACGATAATGAAAAGATCAGAGCAAACACTGCAAATTTGATTCATATACTGCGAGGAAACAACACATGA | 1098 | 51.09 | MAAPFPDDFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITQLPLPENPSLIPNHALRSLISNFNPVSLAKSFLPHPPPQTLISILVSPSSSLDSKLDCLNQLARVSKRDSAMRRRLTESGAVSAVLKCVGSDDPSLQEKALSLLLNLSLDDDNKVGLVAEGAIGLTVAALQARSPDCRAVAATMLTSLAVVEVNKATIGAYPYAIRSLVCLLRNGNNREQKEAATALYAICSFPGNRLRAVECGAVPILLKIANSGLDRAVEVLGLVAKCREGREEMQRFNGCVEILGRVLRNGAPRGVQYALLTLSSLCCHSERMCVEARREGVLGICMTLIDDDNEKIRANTANLIHILRGNNT | 365 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 3588172 | 3589269 | + | Maker00011771 | Lcy1g0403 | 622315 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy1g0403 | 365 | SMART | arm_5 | 200 | 241 | IPR000225 | GO:0005515(InterPro) | |
Lcy1g0403 | 365 | SMART | arm_5 | 118 | 158 | IPR000225 | GO:0005515(InterPro) | |
Lcy1g0403 | 365 | SMART | arm_5 | 159 | 199 | IPR000225 | GO:0005515(InterPro) | |
Lcy1g0403 | 365 | SMART | arm_5 | 279 | 320 | IPR000225 | GO:0005515(InterPro) | |
Lcy1g0403 | 365 | Gene3D | - | 69 | 268 | IPR011989 | - | |
Lcy1g0403 | 365 | SMART | Ubox_2 | 8 | 72 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Lcy1g0403 | 365 | SUPERFAMILY | ARM repeat | 88 | 360 | IPR016024 | - | |
Lcy1g0403 | 365 | CDD | RING-Ubox_PUB | 6 | 53 | IPR045210 | - | |
Lcy1g0403 | 365 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 129 | 171 | IPR000225 | GO:0005515(InterPro) | |
Lcy1g0403 | 365 | PANTHER | U BOX DOMAIN-CONTAINING | 6 | 348 | - | - | |
Lcy1g0403 | 365 | SUPERFAMILY | RING/U-box | 3 | 72 | - | - | |
Lcy1g0403 | 365 | Pfam | U-box domain | 6 | 72 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Lcy1g0403 | 365 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 68 | IPR013083 | - | |
Lcy1g0403 | 365 | ProSiteProfiles | U-box domain profile. | 4 | 79 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Lcy1g0403 | 365 | Gene3D | - | 269 | 361 | IPR011989 | - | |
Lcy1g0403 | 365 | FunFam | RING-type E3 ubiquitin transferase | 4 | 76 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy1g0403 | Lcy-Chr1:3588172 | Lcy5g1804 | Lcy-Chr5:40796872 | 1.10E-40 | dispersed | |
Lcy1g0403 | Lcy-Chr1:3588172 | Lcy5g1148 | Lcy-Chr5:24682916 | 5.22E-234 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy1g0403 | K27970 | - | csv:101213883 | 646.736 |