Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0403 ATGGCGGCTCCATTTCCGGATGATTTCAAGTGCCCAATTTCTCTGGAGATAATGTCGGACCCTGTAATACTCTCCTCCGGCCACACCTTTGATCGCTCTTCCATCCAACGCTGGCTCGACGCCGGTCACCGGACTTGCCCAATCACCCAGTTGCCCCTTCCTGAAAATCCTTCCCTAATCCCTAACCATGCCCTAAGAAGCTTAATTTCAAATTTCAACCCTGTTTCCCTTGCCAAGTCGTTTCTCCCTCATCCGCCGCCCCAAACCCTAATCTCGATTCTCGTCTCTCCTTCTTCTTCCCTCGATTCCAAGCTCGATTGCCTCAATCAACTCGCCAGGGTTTCAAAGCGCGATTCCGCTATGCGGAGAAGATTGACCGAGTCCGGTGCCGTCTCGGCCGTTCTTAAATGCGTCGGTTCTGACGATCCGAGCCTCCAAGAGAAGGCTCTGTCGCTGTTGTTGAATCTTAGTTTGGACGATGATAACAAAGTGGGTTTGGTTGCAGAAGGGGCTATTGGCCTCACCGTGGCTGCTCTTCAAGCCAGGTCCCCCGATTGCAGAGCCGTAGCCGCCACGATGCTGACGAGCTTAGCCGTGGTGGAGGTTAACAAGGCTACGATTGGGGCTTATCCGTACGCGATTCGTTCTCTTGTTTGTCTCTTACGGAACGGCAACAACAGAGAGCAGAAGGAAGCTGCAACTGCGCTTTACGCCATTTGTTCATTCCCAGGGAACCGTCTGCGGGCTGTGGAATGTGGGGCTGTTCCAATTTTGCTTAAAATTGCGAATTCTGGGCTGGATAGAGCAGTGGAGGTTCTGGGGCTTGTGGCCAAGTGTAGGGAAGGTCGAGAAGAGATGCAACGGTTCAATGGATGTGTGGAGATTTTGGGACGTGTGTTGAGAAATGGAGCCCCAAGAGGAGTTCAATATGCTCTTCTAACTCTGAGTTCTCTCTGCTGCCACAGCGAGCGAATGTGCGTGGAGGCCAGAAGAGAAGGCGTTTTGGGAATCTGTATGACATTGATTGATGACGATAATGAAAAGATCAGAGCAAACACTGCAAATTTGATTCATATACTGCGAGGAAACAACACATGA 1098 51.09 MAAPFPDDFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITQLPLPENPSLIPNHALRSLISNFNPVSLAKSFLPHPPPQTLISILVSPSSSLDSKLDCLNQLARVSKRDSAMRRRLTESGAVSAVLKCVGSDDPSLQEKALSLLLNLSLDDDNKVGLVAEGAIGLTVAALQARSPDCRAVAATMLTSLAVVEVNKATIGAYPYAIRSLVCLLRNGNNREQKEAATALYAICSFPGNRLRAVECGAVPILLKIANSGLDRAVEVLGLVAKCREGREEMQRFNGCVEILGRVLRNGAPRGVQYALLTLSSLCCHSERMCVEARREGVLGICMTLIDDDNEKIRANTANLIHILRGNNT 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3588172 3589269 + Maker00011771 Lcy1g0403 622315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0403 365 SMART arm_5 200 241 IPR000225 GO:0005515(InterPro)
Lcy1g0403 365 SMART arm_5 118 158 IPR000225 GO:0005515(InterPro)
Lcy1g0403 365 SMART arm_5 159 199 IPR000225 GO:0005515(InterPro)
Lcy1g0403 365 SMART arm_5 279 320 IPR000225 GO:0005515(InterPro)
Lcy1g0403 365 Gene3D - 69 268 IPR011989 -
Lcy1g0403 365 SMART Ubox_2 8 72 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy1g0403 365 SUPERFAMILY ARM repeat 88 360 IPR016024 -
Lcy1g0403 365 CDD RING-Ubox_PUB 6 53 IPR045210 -
Lcy1g0403 365 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 129 171 IPR000225 GO:0005515(InterPro)
Lcy1g0403 365 PANTHER U BOX DOMAIN-CONTAINING 6 348 - -
Lcy1g0403 365 SUPERFAMILY RING/U-box 3 72 - -
Lcy1g0403 365 Pfam U-box domain 6 72 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy1g0403 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 68 IPR013083 -
Lcy1g0403 365 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy1g0403 365 Gene3D - 269 361 IPR011989 -
Lcy1g0403 365 FunFam RING-type E3 ubiquitin transferase 4 76 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0403 Lcy-Chr1:3588172 Lcy5g1804 Lcy-Chr5:40796872 1.10E-40 dispersed
Lcy1g0403 Lcy-Chr1:3588172 Lcy5g1148 Lcy-Chr5:24682916 5.22E-234 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0403 K27970 - csv:101213883 646.736