Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0412 ATGGTTCCTTCTTGTAGCCAACGTGATTTAAAATGCTCCAACACGACTAACCCCAATCTGAATTCTGACATTAATTTCCTATTGAATTCCTTGACCTCCAAAGCTTCCACCCACACTTTCTACAATGAGACATTTAATGGAATCCATGGTCTCTTCCTCTGCCGAGGGGATCTTCCTAACGAGGCCTGTCATAGCTGCATCGAAGGTGCAACTCAACAAATCAAAGTCGCCTGCTCGTCGCGAACAAATGGCACCATAAGCTTTGATGAATGCGTGTTGAGATACTCAGTTGAGAACTTCTTTGGGATCCTGGAGACAGTTCCAAAAGTAGTGTTATATGATAGTCTGAACCAAACTTCTTTTGAAGACCGTGATTACATCGATCTTGCATTGGTGTCTAATTTAGCAACAGATGCTGCAAATGCAGAGTTGATGTTCAAGGAAGGTGAGGTGAATGTGGCGGGGTTGGATCAGAGATTTGGATTGGCACAGTGTACAAGAGATATCATCAAGCGTGATTGTGAGGTCTGTTTGACAAATTTGGTGGATTTTGCAAAGGGATGTTGCCTAAGGCAGAAACGGTGGCGAGTTTTGGCCCCCAGTTGTAATTTAAGAGTTGAGGAGTTTCGTTTTTATGGGATACCAGGAACTCCATCGTCCTTGCCTCTTGATGAAGAAGGAGGGAACAGAACAAGGACCATAGTCATCAGCATATCAACAGTTGCAGCAGCGGCAATTCTGCTAGGCCTACTGTATGGTTTATTTTTAAGGAGGAACAAAAGACAGGAGAGGGATAGAAGTGACGAGCTTCCTTTGCGAAATCAGGCAAATCGACAGCCGGTTTACTCAATGAGGCAACTTTTGGATGCAACAAATCAAGACAGTGATGGAGATATGAATTACTTCAGTTTCAGTACTCTAAAGGTTATTACAGATGACTTTTCAGATGCTAATAAACTTGGAGAAGGCGGGTTTGGTCCTGTTTACCAGGGAAAGTTGGTGGATGGTGAAGAGGTAGCAGTGAAGAGACTATCAACAAAATCGAGTCAAGGACATGAAGAGTTCAAGAATGAAGCAAAGGTCATTTGGAAGCTTCAACATAAGAATTTGGTTAGACTTTTAGGATGTTGCGTTGAAGGAGAAGAAAAACTTCTGGTCTATGAGTACATGGCAAATACTAGTCTTGATGCTTTCTTGTTTGATCCACTAAAGTGCAAACAACTTAACTGGCTCAAGCGCGAAAACATTGTTAGTGGGATTGCAAGAGGAATTCTCTACCTCCATGAAGATTCTCGACTCAAAATCATCCATAGGGATTTGAAAGCGAGCAATGTACTGTTAGATGAGGAGATGAATCCAAAAATATCAGATTTTGGAACTGCTAGGATATTTGGAGGCAAACAAATTGATGCCAGCACCAATAGAATAGTTGGAACATATGGTTATATGGCGCCAGAGTATGCTATGGAGGGAGTATTCTCAGTTAAGACCGATGTATACAGTTTCGGAGTTCTTATCCTAGAAGTGATCAGTGGGAGAAAGAACACTGGTTTTCTGAACATGGACAGAGCACATAACCTTCTGTCATATGCATGGGAGCTGTGGAGTGAGGGTAGAGCAGAAGAAATGGTGGACAAGAACTTGGCTGGAGATTGCCCAGTGAGTGAGGCTGTAAAATGGATTCACATTGGGTTGTTGTGTGTGCAAGAAGATCCAAACATCAGACCCACCATGTCAGTGGTTGTTCTAATGCTTGGAAGCCAGTCGATCAACCTTCCTCAGCCATCAAAACCTCCATTTCTTACAAGTCGAGGATCTCTCACTAGAAATCAATATTCAACCACTGGAACAGGGACAGGGTTACACACCACAGATCAGTCGTCCACCAGTTCTTCTATCTAG 1902 42.85 MVPSCSQRDLKCSNTTNPNLNSDINFLLNSLTSKASTHTFYNETFNGIHGLFLCRGDLPNEACHSCIEGATQQIKVACSSRTNGTISFDECVLRYSVENFFGILETVPKVVLYDSLNQTSFEDRDYIDLALVSNLATDAANAELMFKEGEVNVAGLDQRFGLAQCTRDIIKRDCEVCLTNLVDFAKGCCLRQKRWRVLAPSCNLRVEEFRFYGIPGTPSSLPLDEEGGNRTRTIVISISTVAAAAILLGLLYGLFLRRNKRQERDRSDELPLRNQANRQPVYSMRQLLDATNQDSDGDMNYFSFSTLKVITDDFSDANKLGEGGFGPVYQGKLVDGEEVAVKRLSTKSSQGHEEFKNEAKVIWKLQHKNLVRLLGCCVEGEEKLLVYEYMANTSLDAFLFDPLKCKQLNWLKRENIVSGIARGILYLHEDSRLKIIHRDLKASNVLLDEEMNPKISDFGTARIFGGKQIDASTNRIVGTYGYMAPEYAMEGVFSVKTDVYSFGVLILEVISGRKNTGFLNMDRAHNLLSYAWELWSEGRAEEMVDKNLAGDCPVSEAVKWIHIGLLCVQEDPNIRPTMSVVVLMLGSQSINLPQPSKPPFLTSRGSLTRNQYSTTGTGTGLHTTDQSSTSSSI 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3654154 3656812 + Maker00011747 Lcy1g0412 622324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0412 633 Gene3D - 111 211 IPR038408 -
Lcy1g0412 633 Gene3D - 4 100 IPR038408 -
Lcy1g0412 633 Pfam Protein tyrosine and serine/threonine kinase 318 582 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0412 633 ProSiteProfiles Gnk2-homologous domain profile. 1 100 IPR002902 -
Lcy1g0412 633 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 117 600 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Lcy1g0412 633 Pfam Salt stress response/antifungal 12 96 IPR002902 -
Lcy1g0412 633 Pfam Salt stress response/antifungal 131 207 IPR002902 -
Lcy1g0412 633 ProSitePatterns Serine/Threonine protein kinases active-site signature. 435 447 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0412 633 ProSiteProfiles Protein kinase domain profile. 314 601 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0412 633 Gene3D Transferase(Phosphotransferase) domain 1 390 593 - -
Lcy1g0412 633 FunFam Uncharacterized protein 390 591 - -
Lcy1g0412 633 MobiDBLite consensus disorder prediction 595 633 - -
Lcy1g0412 633 Gene3D Phosphorylase Kinase; domain 1 287 389 - -
Lcy1g0412 633 SMART serkin_6 314 561 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0412 633 CDD STKc_IRAK 320 585 - -
Lcy1g0412 633 SUPERFAMILY Protein kinase-like (PK-like) 296 612 IPR011009 -
Lcy1g0412 633 ProSiteProfiles Gnk2-homologous domain profile. 106 211 IPR002902 -
Lcy1g0412 633 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 262 389 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0412 Lcy-Chr1:3654154 Lcy1g0417 Lcy-Chr1:3688729 0 dispersed
Lcy1g0412 Lcy-Chr1:3654154 Lcy1g0413 Lcy-Chr1:3663458 1.24E-260 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65615 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0412 - - - 0.0