Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0413 ATGATTCATTTCCTCCCTCAAACATCTTCTTTTTTGCCTTCATCTTTACTACCGCTGATTTTAATCTTTGGGTTCATAATCCCTTCTCGTTGCCAACTCAGTTACTCTCACTACTGCCCACCAGTATCCAATAACGACACGGCCTATTCCCATCTGGATTCTGACGTCAATTTCCTATTGGAATCCTTGTCGTCTAAAGCTTCCAACCACACTTTCTACAACGACAGCTTTAATGGAATCTACGGCCTCTTCCTCTGCCGAGGGGATCTTTCTAGCCAGGAGTGTCATATCTGTGTCGGAGATGTAAGTAAAAGAATCAAACTTGACTGCCCTTCCCGAACAATGGGCATCATATGGTTTGACATGTGCATGTTGAGATACTCTGTTGAAAACTTCTTTGGGACCCAAGCGAGCGCTCCATGGACTTTGCTTTATAATCCTGAGAACGTATCTTCAATTGCTTACCGCGATTCCACCGATCTTTCTCTGTTGTATGGTTTAACCAACGATGCTGCCAAGGCAGAATCGATGTTCAAGGGCGCATGCAAAGGAATGTTGCCTACAGCAAAGAGGGTACCGAGTTTCAGCCCCAAGGCAGTCCCTTTCCTTGAGACACCGGGATCTCCCCCTCCATCCTTTCCTGTACCCATCCTGCCTCCTGATGAAGAAGGAGGCAGTAGAACAAAGATCATAGTCATCAGCATATCAACAGTTGCAGCAGCGGCAATTCTGCTAGGCCTATCCTTTAGTACTCTAAAGACTGCTACGGATGACTTTTCAAATGCTAATAGACTTGGAGAAGGCGGGTTTGGTCAAGTTTACAAGGGAAAGTTGATGAGTGGCGAAGAAATAGCAGTGAAAAGACTATCTGCAAAATCAAGTCAAGGACATGAAGAGTTTAAGAATGAAGCAAAGGTCATCTGGAAGCTTCAACATAAGAATTTGGTTAGACTCTTGGGATGCTCTGCTGAAAGAGAAGAAAAACTTTTGGTCTATTTAGCAAATACTAGTCTTGATGCTTTCTTATTTGATCCATTAAAGTGCAAACAACTTGATTGGCTCAAGCGCAAAAACATTGTGCATGGGATTGCAAGAGGAATTCTCTATCTCCATGAAGATTCTCGACTCAAAATCATTCATAGGGATTTGAAAGCGAGCAATGTATTGTTAGATGAGGAAATGAATCCAAAAATATCAGATTTTGGAACTGCTAGGATATTTGGAGGCCAGCAAATTGATGCTAGCACCAACAGAATAGTTGGCACATATGGTTATATGGCGCCAGAGTATGCTATGGAGGGAGTATTCTTAGTTAAGACCGATGTATACAGTTTCGGAGTTCTAATCCTAGAAGTGATCAGTGGAAGAAAGAACATTGGCTTTCCGAACATGGACAGAGCACAGAACCTTGTGTCATATGCATGGGAGCTATGGAGCGAAGGTAGAGCAGAAGAAATGGTGGACAAGAACTTGGGTGGAGATTGCCCTGTGAGTGAGGGTGTAAAATGGATTCACATTGGGTTGTTGTGTGTACAAGAAGATCCAAACATGAGACCCACCATGTCAGTGGTTGTTCTAATGCTTGGAAGCCAGTTGATTAACCTTCCTCAGCCATCAAAACCTCCATTTCTTTCGGGTGGAGGGGCTCTCATTTCATATCAATATTCAACCACGGAAACGGGCTCAAAGTTACACACCACAGATCAGTCGTCTACTAGTACTTCAATCTAG 1731 43.33 MIHFLPQTSSFLPSSLLPLILIFGFIIPSRCQLSYSHYCPPVSNNDTAYSHLDSDVNFLLESLSSKASNHTFYNDSFNGIYGLFLCRGDLSSQECHICVGDVSKRIKLDCPSRTMGIIWFDMCMLRYSVENFFGTQASAPWTLLYNPENVSSIAYRDSTDLSLLYGLTNDAAKAESMFKGACKGMLPTAKRVPSFSPKAVPFLETPGSPPPSFPVPILPPDEEGGSRTKIIVISISTVAAAAILLGLSFSTLKTATDDFSNANRLGEGGFGQVYKGKLMSGEEIAVKRLSAKSSQGHEEFKNEAKVIWKLQHKNLVRLLGCSAEREEKLLVYLANTSLDAFLFDPLKCKQLDWLKRKNIVHGIARGILYLHEDSRLKIIHRDLKASNVLLDEEMNPKISDFGTARIFGGQQIDASTNRIVGTYGYMAPEYAMEGVFLVKTDVYSFGVLILEVISGRKNIGFPNMDRAQNLVSYAWELWSEGRAEEMVDKNLGGDCPVSEGVKWIHIGLLCVQEDPNMRPTMSVVVLMLGSQLINLPQPSKPPFLSGGGALISYQYSTTETGSKLHTTDQSSTSTSI 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3663458 3666669 + Maker00011983 Lcy1g0413 622325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0413 576 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 236 333 - -
Lcy1g0413 576 Pfam Protein tyrosine and serine/threonine kinase 262 525 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0413 576 ProSiteProfiles Protein kinase domain profile. 259 544 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0413 576 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 76 543 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Lcy1g0413 576 ProSitePatterns Protein kinases ATP-binding region signature. 265 287 IPR017441 GO:0005524(InterPro)
Lcy1g0413 576 ProSiteProfiles Gnk2-homologous domain profile. 34 132 IPR002902 -
Lcy1g0413 576 Gene3D - 25 132 IPR038408 -
Lcy1g0413 576 SUPERFAMILY Protein kinase-like (PK-like) 247 547 IPR011009 -
Lcy1g0413 576 Gene3D Transferase(Phosphotransferase) domain 1 334 535 - -
Lcy1g0413 576 Gene3D Phosphorylase Kinase; domain 1 227 333 - -
Lcy1g0413 576 CDD STKc_IRAK 265 528 - -
Lcy1g0413 576 FunFam Uncharacterized protein 333 534 - -
Lcy1g0413 576 Pfam Salt stress response/antifungal 39 128 IPR002902 -
Lcy1g0413 576 SMART serkin_6 259 528 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0413 576 ProSitePatterns Serine/Threonine protein kinases active-site signature. 378 390 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0413 Lcy-Chr1:3663458 Lcy1g0417 Lcy-Chr1:3688729 4.27E-282 dispersed
Lcy1g0412 Lcy-Chr1:3654154 Lcy1g0413 Lcy-Chr1:3663458 1.24E-260 tandem
Lcy1g0413 Lcy-Chr1:3663458 Lcy1g0414 Lcy-Chr1:3674175 5.90E-102 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65616 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0413 - - - 0.0