Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0416 ATGGAGATGGGCAGTTTGCGTTTGAGTTTGAGAAGGCTTTTCTTCCTCTCCTTGGTTATAGCACAATTGATGTTTACCACAACTTCTCAGCCAGATTTCTTTTACACCGAATGTTCAGACAAAGGCAACTACACCACCAACAGCCCTTTCAAGAAAAATCTCGACAACGTACTTCGCTCAATCTCCTCCAACTCCAACGCCGACACTCGGGTCAACTACGGTTTCTACAACGCCACCTCCGGTGAAGATCCCGACCGAGCCAACGCCAAGGTTCTTTGTCGTAAAGGCGTTCCCTTGGAAGAATGCAGAAGTTGCGTGAATAACTCAGTCAGCAGGATTATACAGAACTGTCCAAACCAGAAGGAAGCTACGGGATGGTACCACAATTGCCAAATTCTTTACTCGAACAACTCTGTTAACGGTGAGATAACCTTGTCCCAGACTCGAATTTGGTTCAACACCGGTAAAGCCCCAGACACGAGCGGTTTCAATGAGGAACTGAGGGAGTTGTTGGATCGACTGCGAAACGAGGCCGCGTCAGGGACTTCTATTCGCAAGTCGGCGGGTGGAGATTTGAAGCTTACAACTCCGAATACGTATACCATATATGGGCTCGTTGATTGTTTTCCCGACATGTCGTTCATGGATTGCGATGTGTGCCTCAGTCGGCTTCAAAGTAATCTTCCTACTTGTTGTAGCGGCAGCATAGGGGCGAGATTAATTGTGACTAGTTGTCAAATCGGTTATGAGATCCACCCTATCTATGAATCACTTCTCTCTAGATCTCCACCTCCGCTTCCGTCGTCTGATGATCCTAATGTCCTCCCTCCATCTTCGTCTTCCACTTCGACACAAGGAAATAATGGTTATAGTACTAGAACTGTTATAATTGTTGTGGTGTCCATCGTTTCAGCCATCATTCTCATTGTTGGCATTTGCATCATTTTGAGATTGAGGAAGCGTAAGCACAAAAGACCATTACAAAAATTAGAAAATGTTGCTCTTGGAGATGCCACTGATGAAATTAGCAGTTTGGAGACGATTCAATTTAATTTCGATACAATTAAAGATGCAACAAATGACTTTTCAAGTGAAAACAAGCTGGGACAGGGTGGATTTGGAGCTGTTTACAGGGGTAAGCTACCTAATGGACAGCATATTGCAGTGAAGAGGCTTGCGAACAATTCACAACAAGGAGATATTGAATTCAAAAATGAAGTCCTTTTGGTAGTCAAGCTTCAGCACCGAAACTTGGTTAGACTGTTGGGATTCTGCTTGCAAGGAAGCGAAAGACTTCTCATATATGAGTTTGTACCGAATGGCAGCCTTGACCACTTCATATTTGATTTTGGAAAGCGGACACTATTAGGTTGGGAAATTCGATACAAAATCATAAATGGCATTGCACGAGGACTTCTTTACCTTCATGAAGATTCTCGCCTCCGAATCATACATCGTGATCTCAAAGCTAGCAATATCTTGTTGGACGTAGAAATGAATCCAAAGATTGCAGATTTTGGTATGGCAAGATTGTTCGAGGTAGATGAGACTCAAGGCAATACGAGTAGAGTTGTGGGAACTTATGGCTATATGGCTCCAGAATATGTAATGCATGGACAATTTTCAGTAAAATCAGATGTCTTCAGCTTTGGTATTTTGGTTCTTGAAATTTTGAGTGGTCAGAAAAACAATTGTTTTCGCAATGGAGAAAACGTGGAAGATCTCTCTAGCTTTGCATGGAAAAACTGGAGGGAAGGAACAACTACAAATGTCATAGATTCAACACTTAGCATTGGTTCAAGGATTGAAATGATAAGATGCATTCACATTGGACTATTGTGTGTCCAAGAAAATGTAGCAAATCGACCAACAATGGCTTCCGTGGTTATGATGCTAAGTAGTTCTTCTCTCACTCTTCCTATTCCCTCTAAACCTGCATTCTTCATGCATAGTATCACCAATGAATCCAACACAATGTTAAAGTCAGATAGGACTAGTCATTCTGAAACCACGTCGTCCCTTCAACTTTCGGAAAATGATGCTTCAATTACGGAGCTTCATCCTCGTTAG 2070 42.51 MEMGSLRLSLRRLFFLSLVIAQLMFTTTSQPDFFYTECSDKGNYTTNSPFKKNLDNVLRSISSNSNADTRVNYGFYNATSGEDPDRANAKVLCRKGVPLEECRSCVNNSVSRIIQNCPNQKEATGWYHNCQILYSNNSVNGEITLSQTRIWFNTGKAPDTSGFNEELRELLDRLRNEAASGTSIRKSAGGDLKLTTPNTYTIYGLVDCFPDMSFMDCDVCLSRLQSNLPTCCSGSIGARLIVTSCQIGYEIHPIYESLLSRSPPPLPSSDDPNVLPPSSSSTSTQGNNGYSTRTVIIVVVSIVSAIILIVGICIILRLRKRKHKRPLQKLENVALGDATDEISSLETIQFNFDTIKDATNDFSSENKLGQGGFGAVYRGKLPNGQHIAVKRLANNSQQGDIEFKNEVLLVVKLQHRNLVRLLGFCLQGSERLLIYEFVPNGSLDHFIFDFGKRTLLGWEIRYKIINGIARGLLYLHEDSRLRIIHRDLKASNILLDVEMNPKIADFGMARLFEVDETQGNTSRVVGTYGYMAPEYVMHGQFSVKSDVFSFGILVLEILSGQKNNCFRNGENVEDLSSFAWKNWREGTTTNVIDSTLSIGSRIEMIRCIHIGLLCVQENVANRPTMASVVMMLSSSSLTLPIPSKPAFFMHSITNESNTMLKSDRTSHSETTSSLQLSENDASITELHPR 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3684508 3689770 - Maker00011629 Lcy1g0416 622328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0416 689 Pfam Salt stress response/antifungal 155 250 IPR002902 -
Lcy1g0416 689 Pfam Salt stress response/antifungal 38 136 IPR002902 -
Lcy1g0416 689 MobiDBLite consensus disorder prediction 262 287 - -
Lcy1g0416 689 Gene3D - 146 253 IPR038408 -
Lcy1g0416 689 Gene3D - 30 138 IPR038408 -
Lcy1g0416 689 ProSitePatterns Serine/Threonine protein kinases active-site signature. 483 495 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0416 689 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 103 648 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Lcy1g0416 689 MobiDBLite consensus disorder prediction 273 287 - -
Lcy1g0416 689 MobiDBLite consensus disorder prediction 659 689 - -
Lcy1g0416 689 ProSitePatterns Protein kinases ATP-binding region signature. 368 390 IPR017441 GO:0005524(InterPro)
Lcy1g0416 689 FunFam Cysteine-rich receptor-like protein kinase 10 322 437 - -
Lcy1g0416 689 Gene3D Transferase(Phosphotransferase) domain 1 438 638 - -
Lcy1g0416 689 ProSiteProfiles Gnk2-homologous domain profile. 145 254 IPR002902 -
Lcy1g0416 689 CDD STKc_IRAK 368 625 - -
Lcy1g0416 689 FunFam Cysteine-rich receptor-like protein kinase 28 438 640 - -
Lcy1g0416 689 Coils Coil 164 184 - -
Lcy1g0416 689 MobiDBLite consensus disorder prediction 659 682 - -
Lcy1g0416 689 Gene3D Phosphorylase Kinase; domain 1 327 437 - -
Lcy1g0416 689 SMART serkin_6 362 637 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0416 689 SUPERFAMILY Protein kinase-like (PK-like) 350 664 IPR011009 -
Lcy1g0416 689 ProSiteProfiles Gnk2-homologous domain profile. 32 139 IPR002902 -
Lcy1g0416 689 Pfam Protein tyrosine and serine/threonine kinase 365 630 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0416 689 ProSiteProfiles Protein kinase domain profile. 362 637 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0416 Lcy-Chr1:3684508 Lcy1g0420 Lcy-Chr1:3714872 0 dispersed
Lcy1g0415 Lcy-Chr1:3679629 Lcy1g0416 Lcy-Chr1:3684508 1.17E-138 tandem
Lcy1g0416 Lcy-Chr1:3684508 Lcy1g0417 Lcy-Chr1:3688729 2.38E-132 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65619 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0416 - - - 0.0