Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0417 ATGCTGAACTCACGAATTACGTATCGATCTTTCCTCCCACTTCTACTAAGCGTTCTAGTTGAAGATGAAGAAGCCATTATGTTTTGGAGTCGATCTCTGAACTTACCCAGAAGGCAGAAACGAAACGAGACCATGATTCAATTCCTCCCTCAAGCAGCTTTTTCTTTGCCTTTATCTTTACTAGTGCTGATTTCATTGTTTGGATTCATGATCCCTTCTCGTTGCCAAGAAGTTCGCCTCTGCCCAGAATCCAATAATAACCACACGACCAACTCCTCCCATCTAGATTCTGACCTCAATTTCCTATTAGGTTCCTTGTCCGCCCAAGCTTCCTCCCACACTTTCTACAACGAGAGCTCTAATGGAATCTATGGCCTCTTCCTCTGCCGAGTGGATATTTCTAGCGAAGACTGTCATAGCTGTGTCGGAGATGCAGGTAAAAGAATCAAAGTTGACTGCCCTTCCCGAACAAATGCCGCCATATGGTTAGACAAATGCATGTTGAGATACTCAGTTAATAACTTCTTTGGGATCCGAGAGACCAATCCAACAATGGTGCCATACGGTAATGATGAATACCATGATTCCATCGATCTTGGTCTGGTGAATGATTTAATCAACGATGCTGCAGATGCAAATTTGATGTTCAAGGACGCTAAGTTAGACCCGCCTGAGGGTGAGGGCAATCAGAGATTTGGATTGGCACAGTGTACAAGAGATATCATCAAGCGTGACTGTGAGGTCTGTTTGAAAAGTTTGGTGAGTTCGGCAGAGGGATGTTGCAAACAGAAAAGAGAGTGGCGAGCTTCAGCACCAAGTTGCGATTTAAGGGTCGGGCCACACCGTTTCCTTGGGACGCCAGCAGCTCCCCCTTCATCCTCTCCTGCACCTCTGCCGCCTCCTCATAAAAAAGGATGGAGTAGAACAAAGATCATAGTCATCAGCATATCAGCAGTTGCAGCAGCGGCAATTCTGCTAGGCCTATTGTATCGTTCACTTTTATGGAGAAACAAAAGACACGAGAGGGATAAAAGTGAAGAACTTCCTTTGCGAAATCGGATGGATCAACAACTAGTTTACTCAATGAGGAAACATTTGGATGTAAAAAATCAAGACAGTAATGGAGATATACATTACTTTAGTTTTAGCACTCTAAAGAATGCTACAGATAACTTTTCAGATGCCAATAAACTTGGAGAAGGCGGATTTGGTCCAGTTTACAAGGGAAAGTTGATGGGTGGTGAGGAAGTAGCAGTGAAAAGACTATCAACAAAATCGAGTCAAGGACATGAAAAGTTCAAGAATGAAGCAAAGGTCATTTGGAAACTTCAACATAAGAATCTAGTCCGACTCTTGGGATGTTGTGTTGAAGGAGAAAAAAAACTTCTGGTTTATGAGTTCATGGCAAATACTAGTCTTGATGCTTTCTTGTTTGATCCACTGAAGTGCAAACAACTTGACTGGCTCAAGCGTGAAAATATTGTCACTGGGATTGCAAGAGGAATTCTCTACCTCCATGAAGATTCTCGACTCAAAATTATCCATAGGGATTTGAAAGCGAGCAACATATTGTTAGACGAGGACATGAATCCAAAAATATCAGACTTTGGAACTGCTAGGATATTTGGAAGCAAACAAATGGATGCAAACACCAATAGAATAGTTGGCACATATGGTTATATGGCGCCGGAGTATGCTATGGAGGGACTATTCTCAGTTAAGTCGGATGTATACAGTTTTGGAGTTCTTATCCTGGAAGTGATCAGTGGGAGAAAGAACATTGGTTTTCTGAACATGGACAGAGCACAGAACCTTCTCTCATATGCATGGGAGCTGTGGAGTGAAGGTAGAGCAGAAGAAATGGTGGACATGAACTTGGCTGGAGATTGCCCTGTGAGTGAGGCTGTAAAATGGATTCACATTGGGTTGTTGTGTGTGCAAGAAGATCCAAACATCAGACCCACCATGTCAATGGTTGTTCTAATGTTAGGAAGCCAGTCGATTAACCTTCCTCAGCCATCAAAACCTCTATTTCTTTCGGGTGGAGGAGCTCTCATTACATATCAATATTCAACCACTAAAACAGGGACAAAATTCCTTACCACAACTCAGTCGTCCACCAGTGCTTCAATCTAG 2136 42.84 MLNSRITYRSFLPLLLSVLVEDEEAIMFWSRSLNLPRRQKRNETMIQFLPQAAFSLPLSLLVLISLFGFMIPSRCQEVRLCPESNNNHTTNSSHLDSDLNFLLGSLSAQASSHTFYNESSNGIYGLFLCRVDISSEDCHSCVGDAGKRIKVDCPSRTNAAIWLDKCMLRYSVNNFFGIRETNPTMVPYGNDEYHDSIDLGLVNDLINDAADANLMFKDAKLDPPEGEGNQRFGLAQCTRDIIKRDCEVCLKSLVSSAEGCCKQKREWRASAPSCDLRVGPHRFLGTPAAPPSSSPAPLPPPHKKGWSRTKIIVISISAVAAAAILLGLLYRSLLWRNKRHERDKSEELPLRNRMDQQLVYSMRKHLDVKNQDSNGDIHYFSFSTLKNATDNFSDANKLGEGGFGPVYKGKLMGGEEVAVKRLSTKSSQGHEKFKNEAKVIWKLQHKNLVRLLGCCVEGEKKLLVYEFMANTSLDAFLFDPLKCKQLDWLKRENIVTGIARGILYLHEDSRLKIIHRDLKASNILLDEDMNPKISDFGTARIFGSKQMDANTNRIVGTYGYMAPEYAMEGLFSVKSDVYSFGVLILEVISGRKNIGFLNMDRAQNLLSYAWELWSEGRAEEMVDMNLAGDCPVSEAVKWIHIGLLCVQEDPNIRPTMSMVVLMLGSQSINLPQPSKPLFLSGGGALITYQYSTTKTGTKFLTTTQSSTSASI 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3688729 3696460 + Maker00011875 Lcy1g0417 622329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0417 711 Gene3D Phosphorylase Kinase; domain 1 366 467 - -
Lcy1g0417 711 Gene3D - 78 175 IPR038408 -
Lcy1g0417 711 Gene3D - 182 283 IPR038408 -
Lcy1g0417 711 ProSiteProfiles Gnk2-homologous domain profile. 76 175 IPR002902 -
Lcy1g0417 711 ProSitePatterns Serine/Threonine protein kinases active-site signature. 513 525 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0417 711 FunFam Uncharacterized protein 468 669 - -
Lcy1g0417 711 CDD STKc_IRAK 398 663 - -
Lcy1g0417 711 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 356 467 - -
Lcy1g0417 711 SMART serkin_6 392 661 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0417 711 Gene3D Transferase(Phosphotransferase) domain 1 468 671 - -
Lcy1g0417 711 SUPERFAMILY Protein kinase-like (PK-like) 374 677 IPR011009 -
Lcy1g0417 711 Pfam Protein tyrosine and serine/threonine kinase 396 660 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0417 711 Pfam Salt stress response/antifungal 81 171 IPR002902 -
Lcy1g0417 711 Pfam Salt stress response/antifungal 201 277 IPR002902 -
Lcy1g0417 711 ProSiteProfiles Gnk2-homologous domain profile. 176 283 IPR002902 -
Lcy1g0417 711 ProSiteProfiles Protein kinase domain profile. 392 678 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0417 711 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 200 678 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0412 Lcy-Chr1:3654154 Lcy1g0417 Lcy-Chr1:3688729 0 dispersed
Lcy1g0413 Lcy-Chr1:3663458 Lcy1g0417 Lcy-Chr1:3688729 4.27E-282 dispersed
Lcy1g0414 Lcy-Chr1:3674175 Lcy1g0417 Lcy-Chr1:3688729 6.69E-156 dispersed
Lcy1g0417 Lcy-Chr1:3688729 Lcy5g1990 Lcy-Chr5:42848416 4.12E-158 dispersed
Lcy1g0416 Lcy-Chr1:3684508 Lcy1g0417 Lcy-Chr1:3688729 2.38E-132 tandem
Lcy1g0417 Lcy-Chr1:3688729 Lcy1g0418 Lcy-Chr1:3696829 4.58E-136 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65620 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0417 - - - 0.0