Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0420 ATGGAGATGGCTACTCGGAGTTTCACAACGCTTCTCTTCCTCTCCTTGGTGGTTATTGCACAATTGATGTTTACCACAACTTCTCAGCCAGATTTCTTTTACTCCAAATGTTCTGACAAAGGCAACTACACCAGCGACAGCCCTTTCAACAAAAATCTCAACAACGTACTTCGCTCCATCTCCTCCGACTCCAACGCCGACACTCGGCTCGACTACGGGTTCTACAACGCCACCTCCGGTGAAGATCCCGACCGAGCCAACGCCAAGGCTCTTTGTCGTAAAGGCGTTCCCTTGGAAGAATGCAGAAGTTGCGTGAATAACTCAGTCAGCAGGATTATACAAAACTGTCCAAACCAGAAGGAAGCTACGGGATGGTACCACGATTGCCAAATTCTTTACTCAAACAACTCTGTTCACGGTGAGATAGACATGTCCGTGCTACTATGGCCACACAACAGCGGTAGAGCCCCAGACGCGAACGGTTTCGATGAGGAACTGAGGGGGCTGCTGGATCGGCTGCGAAACGAGGCCGCGTCAGGGACTTCTATTCGGAAGTCGGCGGGTGGAGATGTGAAGCTTACAACTCCGAATACGTATACCATATATGGGCTCGTTGATTGTTTTCCCGACATGTCGTTCATGGAATGTGATGTGTGCCTCAGTCGGCTTCAAAGTAATCTTCCTACCTGTTGTAGCGGCAGCATAGGGGCGAGATTAGTTGTGACTAGTTGTCAATTCGGTTATGAGATCCACCCCATCTATGAATCACTTCTCTCTCCACCTCCCCCTTCGCCCTCAGCTGCTGATGTACAACCGCCATCTTCGCCTTCCACACCAGGAAATAATGGCAATATGGCTAGAACTGTTATAATCGTTGTGGTGTCCGTCGTTTCTGCCATGGTTCTCGTTGTTGGCTTTTTCAGCATTTTGAGATTGAAGAAGCGAAAACACAAAAGATTATTAGAAAATTTTGAAGGTGTACTTGGAGACACTGATGCAATTAGCAGTGTGGAGACGATTCAATTTGATTTTGAATCCATTAAAGTTGCAACAAATGACTTCTCAAATGAAAACAAGCTTGGACAGGGTGGATTTGGAGCTGTTTACAGGGGTAAGCTACCTAATGGAAAACATATAGCAGTGAAGAGGCTTGCACATAATTCACAACAAGGAGATATTGAATTCAAAAATGAAGTCCTTTTGGTGGTCAAGCTTCAACACCGAAACTTGGTTAGGCTATTGGGATTCTGCTTGCAAGGACGCGAAAGACTTCTCATATATGAGTTTGTACCTAATGGTAGCCTTGACCACTCCATATTTGATTTTGAGAAGCGAACGCTATTAGATTGGCCAAGACGATACAAAATCATAAATGGTATTGCAAGAGGACTCCTTTACCTTCATGAAGATTCTCGCATTCGAATCATACATCGTGATCTCAAAGCTAGCAATATTTTGTTGGATGAGGAAATGAGTCCAAAGATTGCGGATTTTGGTATGGCAAGATTGTTTGAAGTAGATGAAACTCAAGGCAATACAAGTAGAATTGTAGGAACTTATGGTTATATGGCTCCAGAGTACATCATGCACGGACAATTTTCGATAAAATCAGATGTCTTTAGTTTTGGTGTTTTAGTTCTTGAAATTGCATGGAGAAATTGGAAGGCAGGAACAACTACAAATGTCATAGATTCAACACTTAGTGTTGGTTCTAGGATTGAAATGATAAGATGCATTCACATTGGACTGCTGTGTGTTCAAGAGAATGCAGCAAACAGGCCAACAATGGCTTCAGTAGTATTGATGCTTAGTAGCTTCTCTCTAAGTCTCCCACTACCTTCTGAACCTGCATTCTTCATGGACATAGTTGAGAACTTGCCTCCAGTGGGAGGACGCATGATTAATAAGGAACAAGTGGATAAGTCTCAGCCGCCTCCGCCTCCGCCCTCCGCTGTTGATGGTGGGCCTTTGCCTCCGCTCTCAGCTGCTGATGTCCCCGCACCATCTTCGCCTTTAACACAAGGAAATAATGGCAATACTGCTAGAACTGTTATAATCATTGTGGTGCCTATCGTTTCAGCCATCATTCTCATGGTAGGCATTTGCATCATTTTGAGATTGTGGAAGCGAAAGCACAAAATACCATTACCAAAAATTGGAGGCCTTGTTGTTGGAGATGCCACTGATGAAATTAGCATCGTGGAGACAATCCAATATGATTTTGACACCATCAAAGTTGCAACAAATAACTTCTCAAGTGAAAACAAGCTGGGACAGGGTGGATTTGGAGCTGTTTGCAGATCGTTCAATCGCGTAAGAGATCGTGGGTTAGCGTTGGATTCGATTAAGCAGGTGATCTCCACTCCCGTATCTTTCGCAAACAGAGATTTTGGAAAGCGGACACAGTTAGATTGGGAAAGACGATACAAAATCATAAATGGCGTTGCACGAGGACTTCTTTACCTTCATGAAGATTCTCGTCTTCGAATCATACATCGTGATCTCAAAGCTAGTAATATTTTGCTGGATGCAGAAATGAATCCAAAGATTGCAGATTTCGATATGGCAAGAATGTTTGAAGTAGATGAGACTCGAGGCAATACAAGTAGAATTGTGGGAACTTAG 2625 43.85 MEMATRSFTTLLFLSLVVIAQLMFTTTSQPDFFYSKCSDKGNYTSDSPFNKNLNNVLRSISSDSNADTRLDYGFYNATSGEDPDRANAKALCRKGVPLEECRSCVNNSVSRIIQNCPNQKEATGWYHDCQILYSNNSVHGEIDMSVLLWPHNSGRAPDANGFDEELRGLLDRLRNEAASGTSIRKSAGGDVKLTTPNTYTIYGLVDCFPDMSFMECDVCLSRLQSNLPTCCSGSIGARLVVTSCQFGYEIHPIYESLLSPPPPSPSAADVQPPSSPSTPGNNGNMARTVIIVVVSVVSAMVLVVGFFSILRLKKRKHKRLLENFEGVLGDTDAISSVETIQFDFESIKVATNDFSNENKLGQGGFGAVYRGKLPNGKHIAVKRLAHNSQQGDIEFKNEVLLVVKLQHRNLVRLLGFCLQGRERLLIYEFVPNGSLDHSIFDFEKRTLLDWPRRYKIINGIARGLLYLHEDSRIRIIHRDLKASNILLDEEMSPKIADFGMARLFEVDETQGNTSRIVGTYGYMAPEYIMHGQFSIKSDVFSFGVLVLEIAWRNWKAGTTTNVIDSTLSVGSRIEMIRCIHIGLLCVQENAANRPTMASVVLMLSSFSLSLPLPSEPAFFMDIVENLPPVGGRMINKEQVDKSQPPPPPPSAVDGGPLPPLSAADVPAPSSPLTQGNNGNTARTVIIIVVPIVSAIILMVGICIILRLWKRKHKIPLPKIGGLVVGDATDEISIVETIQYDFDTIKVATNNFSSENKLGQGGFGAVCRSFNRVRDRGLALDSIKQVISTPVSFANRDFGKRTQLDWERRYKIINGVARGLLYLHEDSRLRIIHRDLKASNILLDAEMNPKIADFDMARMFEVDETRGNTSRIVGT 874
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3714872 3726075 - Maker00011758 Lcy1g0420 622332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0420 874 FunFam cysteine-rich receptor-like protein kinase 10 430 550 - -
Lcy1g0420 874 ProSiteProfiles Protein kinase domain profile. 354 607 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0420 874 Gene3D Phosphorylase Kinase; domain 1 736 795 - -
Lcy1g0420 874 Gene3D Phosphorylase Kinase; domain 1 325 429 - -
Lcy1g0420 874 Pfam Salt stress response/antifungal 36 135 IPR002902 -
Lcy1g0420 874 Pfam Salt stress response/antifungal 157 249 IPR002902 -
Lcy1g0420 874 SUPERFAMILY Protein kinase-like (PK-like) 342 620 IPR011009 -
Lcy1g0420 874 ProSitePatterns Protein kinases ATP-binding region signature. 360 382 IPR017441 GO:0005524(InterPro)
Lcy1g0420 874 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0420 874 Pfam Protein kinase domain 803 872 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0420 874 Pfam Protein tyrosine and serine/threonine kinase 357 600 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0420 874 ProSiteProfiles Gnk2-homologous domain profile. 144 253 IPR002902 -
Lcy1g0420 874 ProSiteProfiles Protein kinase domain profile. 666 874 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0420 874 MobiDBLite consensus disorder prediction 261 281 - -
Lcy1g0420 874 Gene3D Transferase(Phosphotransferase) domain 1 430 609 - -
Lcy1g0420 874 Gene3D Transferase(Phosphotransferase) domain 1 796 874 - -
Lcy1g0420 874 MobiDBLite consensus disorder prediction 637 674 - -
Lcy1g0420 874 ProSiteProfiles Gnk2-homologous domain profile. 31 138 IPR002902 -
Lcy1g0420 874 CDD STKc_IRAK 360 600 - -
Lcy1g0420 874 SMART serkin_6 354 607 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0420 874 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 139 619 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Lcy1g0420 874 MobiDBLite consensus disorder prediction 641 665 - -
Lcy1g0420 874 FunFam Cysteine-rich receptor-like protein kinase 10 314 429 - -
Lcy1g0420 874 FunFam Os07g0541700 protein 792 874 - -
Lcy1g0420 874 ProSitePatterns Serine/Threonine protein kinases active-site signature. 830 842 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0420 874 Gene3D - 145 252 IPR038408 -
Lcy1g0420 874 Gene3D - 29 137 IPR038408 -
Lcy1g0420 874 SUPERFAMILY Protein kinase-like (PK-like) 739 874 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0415 Lcy-Chr1:3679629 Lcy1g0420 Lcy-Chr1:3714872 1.46E-130 dispersed
Lcy1g0416 Lcy-Chr1:3684508 Lcy1g0420 Lcy-Chr1:3714872 0 dispersed
Lcy1g0420 Lcy-Chr1:3714872 Lcy1g0422 Lcy-Chr1:3738490 6.25E-249 dispersed
Lcy1g0419 Lcy-Chr1:3704493 Lcy1g0420 Lcy-Chr1:3714872 7.60E-172 tandem
Lcy1g0420 Lcy-Chr1:3714872 Lcy1g0421 Lcy-Chr1:3730047 6.82E-251 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65623 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0420 - - - 0.0