Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0422 ATGGAGATGGGAACTCCAAAAAACCTTCTCTTCCTCTGCTTCATTCTCATATTCATGGTTCCTACCATCATTTCTCAAATAGAAATCAAGACCCACTCATGTTCAAACAGCGCCAACTATACCACAAACAGCGTTTACAAGCAAAATCTCGATAACCTCCTTTCCTCCATCGCATCCAACACCGAGATAGATTATGGGTTTTACAATTTCTCGGCCGGACAGGAACCCGACACGGTGAACGCCATCGCCCTTTGCCTGGGAGATCTGACGGTGGAAAAATGCAGGAGCTGTCTCAGAAATTCGACTCGGAGGATTCTACAGGATTGTCCCACCCAGAAGGAGGCTATCGGATGGTACACCGATTGTATGATTCGTTACTCAAATGAATCGATATTAGGCATCGGGAACGACCGAGTGCTTGAGCCAGTTTTTATTGCTGGTAAGAATGCATCGGACATAGATGGGTACACTCAATCACTCAGCACTCTGTTGCAAAGACTGAGGAATCAGGCTGCGTCTGGGGATTCTAGACACAAATTTGCAGTGGGCGAAATTGCAGCACCCAATTTGGATACGATATTTGGGCTTCTTCAGTGTACTCCCGATTTGACATTTGTGGATTGCAATAATTGTCTATTGAAAGCCGCTGGTCGTGTTCCAACTGGAAGTATAGGAACCAGGATATTTTTGACCAGCTGTTATTTGAGATATGAGACTAACGATCTTTTCTACGACGCTCTGTCACCGCCGCCCCCGCCGCCCACTGCTGGTGGCACTCCTTCCCCACCCCTCTCGCCGCCGCCTCTGCCTCCGATGCAAGAAAACAATGGCAATAATGCTAAAACTGTTATAATCGTTGTGGTGTCCATCGTTTCAGTCATCATTCTTGTTGTTGGAATTTTGATCGTTTTCAGATTGAGGAAGAGAAAGCAGAAAAGACAATTCGTAAAATCTGAAGGTGTTGCTTTTGGGGACACCACTGATGAAATTGGCAGCATAGAGACAATTCAATTTGATTTTGACATCATTAAAGTTGCAACAAATGACTTCTCAAGTGAAAACAAACTTGGACAGGGTGGATTTGGAGCTGTTTACAAGGGTAAGCTACCCAATGGACAACACATTGCAGTAAAGAGGCTTGCGAATAATTCACAACAAGGAGATGTTGAATTCAAAAACGAAGTCCTTTTGGTGATCAAGCTTCAACATCGAAACTTGGTTAGGCTGCTTGGATTCTGCTTGCAAGGAACCGAAAGACTTCTCATATATGAGTTTGTACCAAATGCTAGCCTTGATCAATTCATATTTGACATTGAAAAACGGACACTATTAGATTGGGAAAGACGGTACAAAATTATAAATGGCATTGCACGAGGACTTCTTTACCTTCATGAAGATTCCCGCCTTCGAATCATACACCGTGATCTCAAAGCGGGAAATATTTTGTTGGATGCTGAAATGAATGCAAAGATTGCAGACTTTGGTATGGCAAGATTATTTGAAGTAGATGAGACTCAAGGAAACACGAGTAGAATTGTGGGAACTTATGGTTATATGGCTCCAGAATATGTCATGCATGGACAATTTTCAGTGAAATCGGACGTTTTTAGTTTTGGCATTTTGGTTCTTGAAATTGCATGGAAAAATTGGAAGGCCGGAACTACTACGAATATCATGGATCCAATACTGAGTGTTGGTTCAAAGATTGAAATGATGAGATGCATTCACATTGGACTATTGTGTGTTCAAGAGAATGCAGCAGATCGTCCAACAATGGGTTCGGTGGTTTTGATGCTTACTAGCACCTCTCTCACTCTTCCTATCCCGTCTGAACCAGCATTCTTTATGCATAGTCAGATGGATGAATCTAGCACACTGTCAAAACCACATCATTGGTCGTCGGAGATAACTGAAGCTAGTGATTTTGAAAGTGCATCCCTTCAGCATTTTAAGAATTAA 1959 42.67 MEMGTPKNLLFLCFILIFMVPTIISQIEIKTHSCSNSANYTTNSVYKQNLDNLLSSIASNTEIDYGFYNFSAGQEPDTVNAIALCLGDLTVEKCRSCLRNSTRRILQDCPTQKEAIGWYTDCMIRYSNESILGIGNDRVLEPVFIAGKNASDIDGYTQSLSTLLQRLRNQAASGDSRHKFAVGEIAAPNLDTIFGLLQCTPDLTFVDCNNCLLKAAGRVPTGSIGTRIFLTSCYLRYETNDLFYDALSPPPPPPTAGGTPSPPLSPPPLPPMQENNGNNAKTVIIVVVSIVSVIILVVGILIVFRLRKRKQKRQFVKSEGVAFGDTTDEIGSIETIQFDFDIIKVATNDFSSENKLGQGGFGAVYKGKLPNGQHIAVKRLANNSQQGDVEFKNEVLLVIKLQHRNLVRLLGFCLQGTERLLIYEFVPNASLDQFIFDIEKRTLLDWERRYKIINGIARGLLYLHEDSRLRIIHRDLKAGNILLDAEMNAKIADFGMARLFEVDETQGNTSRIVGTYGYMAPEYVMHGQFSVKSDVFSFGILVLEIAWKNWKAGTTTNIMDPILSVGSKIEMMRCIHIGLLCVQENAADRPTMGSVVLMLTSTSLTLPIPSEPAFFMHSQMDESSTLSKPHHWSSEITEASDFESASLQHFKN 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3738490 3742001 - Maker00011616 Lcy1g0422 622334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0422 652 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 27 131 - -
Lcy1g0422 652 FunFam Cysteine-rich receptor-like protein kinase 10 308 425 - -
Lcy1g0422 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0422 652 Gene3D Transferase(Phosphotransferase) domain 1 426 606 - -
Lcy1g0422 652 MobiDBLite consensus disorder prediction 246 273 - -
Lcy1g0422 652 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 151 615 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Lcy1g0422 652 Pfam Salt stress response/antifungal 150 239 IPR002902 -
Lcy1g0422 652 Pfam Salt stress response/antifungal 34 129 IPR002902 -
Lcy1g0422 652 Pfam Protein tyrosine and serine/threonine kinase 353 596 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0422 652 ProSiteProfiles Protein kinase domain profile. 350 652 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0422 652 ProSiteProfiles Gnk2-homologous domain profile. 138 242 IPR002902 -
Lcy1g0422 652 SMART serkin_6 350 599 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0422 652 Gene3D Phosphorylase Kinase; domain 1 315 425 - -
Lcy1g0422 652 ProSitePatterns Protein kinases ATP-binding region signature. 356 378 IPR017441 GO:0005524(InterPro)
Lcy1g0422 652 CDD STKc_IRAK 356 600 - -
Lcy1g0422 652 MobiDBLite consensus disorder prediction 246 275 - -
Lcy1g0422 652 ProSiteProfiles Gnk2-homologous domain profile. 28 131 IPR002902 -
Lcy1g0422 652 FunFam cysteine-rich receptor-like protein kinase 10 426 546 - -
Lcy1g0422 652 SUPERFAMILY Protein kinase-like (PK-like) 338 637 IPR011009 -
Lcy1g0422 652 Gene3D - 26 130 IPR038408 -
Lcy1g0422 652 Gene3D - 142 241 IPR038408 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0420 Lcy-Chr1:3714872 Lcy1g0422 Lcy-Chr1:3738490 6.25E-249 dispersed
Lcy1g0422 Lcy-Chr1:3738490 Lcy1g0424 Lcy-Chr1:3746576 9.55E-226 dispersed
Lcy1g0421 Lcy-Chr1:3730047 Lcy1g0422 Lcy-Chr1:3738490 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65625 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0422 - - - 0.0