Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0424 ATGGCTTCTCCCACCATTTCCCAACTAGATTTCGCCAGATCCTTATGTCCAGACGCCGCCAACTACTCCGTCAATTCCACTTACCGCAAAAACCTCCAAAACCTACTTTCTTCCATCTCCTCCGAACCCCAGTTACTAACTTTCGGCTTTCACACTCTCTCCGCCGGCGAAGAACCCGACAAGGTCAACGCCGCCGTCCTCTGCCGCGGAGACCTCTCCGCCGACATATGCAAAACCTGCGTCGAAGACTCGACCCATAAAATCCTACAGGTCTGCCCCAACCAAAAGGCCGCAATCGTGTGGTACAATCAGTGCATGCTTCGGTTCTCGGACACCGAGATTCTCGGCGTTATGAACAATTTGGATTCGCAGTCGATTTTCAACGGGCGAAAGGCATCGGACCCGAATAAGTTTCTTGAGGCAGTGAGGAGTTTGATGAACAGATTGAGAGAAGAGGCTGCGTCGGGGAATTCTACACGGAAATTTGCTACCGGAAAGGTTCCGGCTGGCAATGAGACGGTGTACGGGCTTGTGCAGTGCACGCCGGACTTGTCGTCAGAGGATTGCGATAAGTGTGTTGGTCAGCGTGTTGCGTTGATTAATGAGGCCAGTATTGGGGCGAGGATATTTACGGCGAGTTGTGTTTTGAGATTTGAGAATTATATTTTCTTTACTCCGCCGGCTAATGCCACTCTCTCCCCGTCTCCACTGCCGTCTCCGCCGCAACTTCCGGCGCCAACTGCAGGCTCCGCAGGAAGTAATGGCAAAGGCAAAGGCAAAGGCAATAGCAATATCACTACTGTCATAATCATCGTTGTATCAATTATTTCTGCAATCATTCTCGTCATTGGCATCTGCTTCATTTTACGAGTGAAATGGCGAAAACACAAAAAATCATCCGAAGTAGAAAGTGTTGGCTTCAAAGAAGAAACTGATCAGGAAATTAGTGGCATGGAGACGATTCAATTTGATTTCGACACAATCAAAGTAGCAACAAATGAGTTCTCAGATGAAAATAAGCTAGGAGAAGGTGGATTTGGAGTTGTCTACAAGGGAAGTTTATCCAATGGACAAAACATAGCAGTGAAGAGGCTTTCGAGGAATTCAGGACAAGGAGGTGAGGAGTTCAAAAATGAAGTCCTCGTGATGGCTAAGCTTCAACATAGAAACTTAGTTAGGCTGCTGGGATTTTGCTTGGAGGGAAATGAAAGACTTCTCATCTATGAGTTTCTACCAAACGCCAGCCTTGATCACTTCATATTTGATCCTGTCAAACGAGCAATTTTGGATTGGGAAAGACGAAACAAAATTATATGTGGCATTGCTCGAGGACTACTATACCTTCATGAAGATTCTCGTATTCGAATAATTCATCGTGATCTTAAAGCTAGCAATATTTTGTTGGATAGAGAAATGAATTCTAAAATTTCAGATTTTGGCATGGCAAGATTATTTGAATTGGATGAGACTCGAGGTCAAACAAACAGAATCGTGGGAACTTATGGGTACATGGCTCCTGAGTATGCGTACCATGGACAATTTTCAATAAAATCAGACGTGTTTAGTTTTGGTGTATTGATTCTTGAGATTATAAGCGGTCAAAAAAATAACTGTTTTCGTGACAGAGAGAATACGGAGGATCTTTTAAGCTTTGCATGGAAAAATTGGAGGGATGGAACACCTGAAAATGTCATAGATACAATAGTACTTAGTTCAGGTTCAAGGACGGAAATGATAAGATGTATTCATATTGGATTACTGTGTGTTCAAGAGAACGTAGCAGATCGACCAACAATGGCGTCGGTAGTTCTAATGCTTAATAGCTTCTCTCTCACACTCTCTCTCCCCACTCGACCTGCCTTCTTTCTGCAGAGCAACAACATCTCGTCGAATGAAAATCATTCCCCAACTGCTCCTCTTCAAGCTAATTCTTCACAAAATGGAGCTTCCATTTCTGACATTTATCCACGCTAG 1974 44.22 MASPTISQLDFARSLCPDAANYSVNSTYRKNLQNLLSSISSEPQLLTFGFHTLSAGEEPDKVNAAVLCRGDLSADICKTCVEDSTHKILQVCPNQKAAIVWYNQCMLRFSDTEILGVMNNLDSQSIFNGRKASDPNKFLEAVRSLMNRLREEAASGNSTRKFATGKVPAGNETVYGLVQCTPDLSSEDCDKCVGQRVALINEASIGARIFTASCVLRFENYIFFTPPANATLSPSPLPSPPQLPAPTAGSAGSNGKGKGKGNSNITTVIIIVVSIISAIILVIGICFILRVKWRKHKKSSEVESVGFKEETDQEISGMETIQFDFDTIKVATNEFSDENKLGEGGFGVVYKGSLSNGQNIAVKRLSRNSGQGGEEFKNEVLVMAKLQHRNLVRLLGFCLEGNERLLIYEFLPNASLDHFIFDPVKRAILDWERRNKIICGIARGLLYLHEDSRIRIIHRDLKASNILLDREMNSKISDFGMARLFELDETRGQTNRIVGTYGYMAPEYAYHGQFSIKSDVFSFGVLILEIISGQKNNCFRDRENTEDLLSFAWKNWRDGTPENVIDTIVLSSGSRTEMIRCIHIGLLCVQENVADRPTMASVVLMLNSFSLTLSLPTRPAFFLQSNNISSNENHSPTAPLQANSSQNGASISDIYPR 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3746576 3750426 - Maker00012012 Lcy1g0424 622336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0424 657 MobiDBLite consensus disorder prediction 233 260 - -
Lcy1g0424 657 ProSitePatterns Protein kinases ATP-binding region signature. 341 363 IPR017441 GO:0005524(InterPro)
Lcy1g0424 657 ProSiteProfiles Gnk2-homologous domain profile. 120 223 IPR002902 -
Lcy1g0424 657 FunFam Cysteine-rich receptor-like protein kinase 28 411 614 - -
Lcy1g0424 657 Gene3D - 121 223 IPR038408 -
Lcy1g0424 657 Gene3D - 9 113 IPR038408 -
Lcy1g0424 657 Gene3D Phosphorylase Kinase; domain 1 308 410 - -
Lcy1g0424 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0424 657 FunFam Cysteine-rich receptor-like protein kinase 10 294 410 - -
Lcy1g0424 657 FunFam Cysteine-rich receptor-like protein kinase 10 123 223 - -
Lcy1g0424 657 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 131 622 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Lcy1g0424 657 Pfam Salt stress response/antifungal 16 111 IPR002902 -
Lcy1g0424 657 Pfam Salt stress response/antifungal 131 221 IPR002902 -
Lcy1g0424 657 SMART serkin_6 335 610 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0424 657 Gene3D Transferase(Phosphotransferase) domain 1 411 614 - -
Lcy1g0424 657 Pfam Protein tyrosine and serine/threonine kinase 338 603 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0424 657 ProSiteProfiles Protein kinase domain profile. 335 610 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0424 657 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 9 114 - -
Lcy1g0424 657 MobiDBLite consensus disorder prediction 632 657 - -
Lcy1g0424 657 SUPERFAMILY Protein kinase-like (PK-like) 320 639 IPR011009 -
Lcy1g0424 657 CDD STKc_IRAK 341 607 - -
Lcy1g0424 657 ProSiteProfiles Gnk2-homologous domain profile. 10 114 IPR002902 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0418 Lcy-Chr1:3696829 Lcy1g0424 Lcy-Chr1:3746576 0 dispersed
Lcy1g0419 Lcy-Chr1:3704493 Lcy1g0424 Lcy-Chr1:3746576 5.26E-278 dispersed
Lcy1g0421 Lcy-Chr1:3730047 Lcy1g0424 Lcy-Chr1:3746576 6.63E-254 dispersed
Lcy1g0422 Lcy-Chr1:3738490 Lcy1g0424 Lcy-Chr1:3746576 9.55E-226 dispersed
Lcy1g0424 Lcy-Chr1:3746576 Lcy5g1983 Lcy-Chr5:42779607 5.26E-192 dispersed
Lcy4g0582 Lcy-Chr4:7051930 Lcy1g0424 Lcy-Chr1:3746576 8.39E-37 dispersed
Lcy1g0423 Lcy-Chr1:3742225 Lcy1g0424 Lcy-Chr1:3746576 1.01E-20 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65626 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0424 - - - 0.0