Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0429 ATGCCGATGACGACCCATCAGCCTCTTCTTCAACCCCCCAAAACTACCCGCTCCAAAACCTTCTCCATAATCCTCTGTTTTTCTGCAATTTTCTGCTCAGCCATTTTCATTACCAACAAATTGATCGAATCAAACCCATCTCAAACTGAAAATGATCAGCCCTTCCTTCACACCATCTGCCACAAGGCTTACAACCCATCATCCTGCGTTGAAATGGCCGCCTCAGAGTTCCCCTTACACCAAGAAACGAAAACGAAGAACGGGGCTCATTTCTTACAATTTTTCCTGAGCAAATCCATAGCCAAAGTCATTAACACAATCGAGAGCACCAGAGATCTCAGCCGTAGAATCAACAGCCCTCGCGGGGAAGCGGCTCTGGCCGATTGCGTCGAGCTCATGGAGATCTCGATGGACCGAATAGCGGACTCGATTTCGGCTCTGAAGAACAGAACGAGCGGCTCGATCGAAAACGCGCACACATGGCTAAGCAGCGTGCTGACGAACCACATGACGTGCTTGGATGAGGTCGATAATTCAATTCCGAGAGCGGCGGGCATGGATCTGGGGCTTGAAGAGCTGATTGTGAGAGGGAGAAATTCACTGGGGATTTTGGTTTCGATTTGGGGATCGGAGATGGAAGAGAATGGGAATGGGTATCCGAGTTGGTTGAAGAGCGGAGATCGGAGGCTGTTGGGGATTATGGGGAGAGAAATGGAGGCGAATATAGTGGTGGCGAAGGATGGGAGTGGGAATTTCAAGACGGTGAAGGAGGCGGTTGAGGCGGTTCCAGACAAGAGTAAGAGTAGAATTGTTATATATGTGAAGAAGGGGATTTATGAAGAGAATGTGGAAATTGGGAAGAAGAAGAAGAATGTGATGATCGTCGGAGATGGAATGGATTCCACCATTATCACTGCTAGCCTCAACGTCGCTGATGGATCAACTACTTTTAAATCTGCAACTGTTGCTGCCGTGGGAGATGGATTTATAGCCCAAGACATCTGCTTCAGAAACACCGCCGGGCCGGAAAAGCACCAAGCGGTGGCGCTTCGGGTCGGAGCAGACCAAGCCGTCATAAACCGGTGTCGTATCGACGCTTATCAAGACACTCTCTACACACATTCCAACCGCCAGTTCTACCGAGACTCAACCATCACCGGCACCGTGGACTTCATTTTCGGCAACGCCGCCGTCGTACTACAGAACTGCAAAATCGAACCCCGACGGCCCATGAGCAACCAGGCCAACATGGTGACGGCCCAAGGCCGAATCGACCCAAATCAAAACACGGGTACTTCAATCCAGCGATGCCAAATCGTCGCAAGCTCCGACCTCGAGCCCGTTAAGCGGTCCATTAAGACATATTTGGGCCGCCCATGGAAGGAGTATTCGAGGACCGTCGTTATGCAGTCCAAAATTGGCGATCTTATAGATCCAGCGGGCTGGGCCGAATGGAACGGAGACTTTGCATTGAAGACTCTTTATTACGGTGAGTATTCGAATAATGGGCCGGGCTCTGATGTTAGCAAACGAGTAAAATGGCCTGGTTACCATGTCATTACGAGCCCATCTGAGGCCCAAAAGTTCACAGTGGATTCGCTTATACAAGGAGGCGATTGGCTGGGCGCCTCAGGCGTGACTTTTATCCCAGGGCTGTGA 1659 50.57 MPMTTHQPLLQPPKTTRSKTFSIILCFSAIFCSAIFITNKLIESNPSQTENDQPFLHTICHKAYNPSSCVEMAASEFPLHQETKTKNGAHFLQFFLSKSIAKVINTIESTRDLSRRINSPRGEAALADCVELMEISMDRIADSISALKNRTSGSIENAHTWLSSVLTNHMTCLDEVDNSIPRAAGMDLGLEELIVRGRNSLGILVSIWGSEMEENGNGYPSWLKSGDRRLLGIMGREMEANIVVAKDGSGNFKTVKEAVEAVPDKSKSRIVIYVKKGIYEENVEIGKKKKNVMIVGDGMDSTIITASLNVADGSTTFKSATVAAVGDGFIAQDICFRNTAGPEKHQAVALRVGADQAVINRCRIDAYQDTLYTHSNRQFYRDSTITGTVDFIFGNAAVVLQNCKIEPRRPMSNQANMVTAQGRIDPNQNTGTSIQRCQIVASSDLEPVKRSIKTYLGRPWKEYSRTVVMQSKIGDLIDPAGWAEWNGDFALKTLYYGEYSNNGPGSDVSKRVKWPGYHVITSPSEAQKFTVDSLIQGGDWLGASGVTFIPGL 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3790912 3793126 + Maker00011739 Lcy1g0429 622341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0429 552 PANTHER PECTINESTERASE 24 541 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lcy1g0429 552 ProSitePatterns Pectinesterase signature 2. 385 394 IPR033131 -
Lcy1g0429 552 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 204 IPR035513 -
Lcy1g0429 552 Pfam Pectinesterase 241 537 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lcy1g0429 552 CDD PMEI-like_4 59 207 - -
Lcy1g0429 552 FunFam Pectinesterase 235 552 - -
Lcy1g0429 552 Gene3D - 235 552 IPR012334 -
Lcy1g0429 552 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 54 178 IPR035513 -
Lcy1g0429 552 SUPERFAMILY Pectin lyase-like 239 551 IPR011050 -
Lcy1g0429 552 NCBIfam pectinesterase inhibitor domain 25 175 IPR006501 GO:0004857(InterPro)
Lcy1g0429 552 SMART PMEI_2 51 203 IPR006501 GO:0004857(InterPro)
Lcy1g0429 552 Pfam Plant invertase/pectin methylesterase inhibitor 55 178 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0079 Lcy-Chr13:833308 Lcy1g0429 Lcy-Chr1:3790912 2.64E-138 dispersed
Lcy1g0429 Lcy-Chr1:3790912 Lcy6g0260 Lcy-Chr6:2261062 2.84E-150 dispersed
Lcy1g0429 Lcy-Chr1:3790912 Lcy3g1771 Lcy-Chr3:44975720 1.65E-149 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0429 K01051 - csv:101216377 932.939