Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0431 ATGTTCGACCCAGATATGTTCGATACTACGCACCATCATATGCTTGATATGGCCTTCAACACCTCAGAAAACGAGATGGAAAACGTTAGAGACGATGATTTTGAAACGAAATCGGGCGCAGAAATCTTAGAGGCTGCTTGTGGGGGGAGTGACCAACGCTCCAAAAAGAAACGTTACAATCGCCACACGCAGCACCAAATCCAAGAAATGGAAGCATTCTTTAAAGAGTGTCCTCACCCAGATGACAAGCAGAGAATGGAGCTGAGCCGCGAGCTGGGGTTGGAGCCATTGCAAGTCAAGTTTTGGTTTCAAAACAAGCGCACCCAGATGAAGGCACAACATGAGAGACATGAAAACGCCATTTTGAAAGCTGAAAATGAAAAGCTTCGTGCTGAGAATATTAGATACAGGGAAGCATTCGCCCATTCAACCTGCCCCAACTGCGGATCCTCCACTGCCCTCGGCGAAATGTCCTTTGAAGACCAACATTTGCGCATTGAAAATTCCCGTTTGCGAGATGAGATCGACAGAATGAGTGGATATGGTCCAAAATGCGTAGCAAAGCCGCTGCCTTCTTCATACTATCACCTTCCGTCGAATGCGCCGACGAGATCTCTCGACTTGGGCATCACAAATTTCGGTCAACAGTCGGGTTTCGTCGGAGAAATGTACGGAGCCGCCGACTTTCTCCGGTCGATTTCGAGACCTTCGGAAGCCGACAAGCCTGTAATCGTCGAGCTGGCCGTTTCGGCCATGGAGGAACTGACCCGAATGGCTCAGGCCGGCGAACCGTTGTGGGTTCCGGCGGATAACAAGTCCACTGAGTTGCTTCTTAACGAAGCCGAGTATTTGACGAGTTTCCGAGGCGGAATTGGGCCGAAGCCCTTGGGCTTGAGAACTGAAGCTTCACGAGTTTCGGCTATTGTTTTCATGAACCATATTAAGCTTGTGGATATTTTTATGGATGCTACGCAATGGTCGACTGTGTTCTGTGGCATTGTTTCGAGAGCATCGACTGTGGAAGTTCTTTCAGCTGGATTACCAGGAAACTGCAACGGGGCTCTGCATGTGATGAGCGCCGAATTCCAAGTCCCTTCGCCGCTGGTTCCGACCCGTGAAAATTACTTCGTAAGATACTGCAAACAGCACAACGACGGCACATGGGCCGTGGCTGATGTTTCCTTGGACAGCCTGCGCCCTTCTCCCATCCCAAAGAGCCGAAGAAGACCCTCTGGTTGTTTAATTCAAGAATTGCCCAACGGCTATTCAAAGATCACTTGGGTGGAACACGTAGAGGTGGACGAAACTGGCGTGCCCACAATGTACAGACCGCTCGTTAATTCAGCCCTCGCTTTTGGGGCAAAACGCTGGGTGGCTACCTTAGATAGGCAATGTGAACGCTTAGCCACTTCAATGGCCACCACCATAACCACCGGCGAACTTCGCGTCATATCAAGTATTGAAGGGAGGAAGAGTATGCTGAAGCTAGCCGAGAGAATGGTGACGAGCTTCTGCGCCGGCGTCGGCGCGTCGAGTGTACACGCTTGGACGGCGCTACCGGCAGCCGGCAGCGATGATGTTCGAGTTGTCACCAGGAAGAGCACCGACGAACCTGGCCGACCACCTGGTGTAGTTCTTAGCGCCGCCACTTCTTTTTGGATCCCTGTTCCTCCTAAGGTCGTCTTTGATTTCCTTCGGAAAGAGAAATCTCGAAGCGAGTGGGATATTCTGTCGAATGGAGGCTTGGTTCAGGAAATGGCGCACATAGCCAACGGTCGCCATTCTGGGAACTGTGTGTCGTTGCTTCGTGTCAATAGTGTGAATTCGAGCCAGAGCAATATGCTGATACTACAAGAAAGCTGCACCGACTCTACAGGATCGTACGTTATTTATGCTCCGGTTGACACGGTTGCAATGAACGTGGTGCTAAGCGGTTGCGACCCTGATTACGTGGCGCTTCTACCGTCGGGATTCGCCATACTTCCCGACGGACCCGCCGGATCCAACGGCGGAGGAATTCTCGAGGTCGGCTCCGGTGGGTCACTCATCACTGTCGCATTTCAAATTCTAGTGGATTCAGTTCCAACGGCTAGACTTTCAATTGGATCAGTGGCCACCGTTAACAGTCTGATTAAGTGTACGGTTGAAAGGATCAGAGCCGCTGTGATGCGTGAAAACCCATGA 2184 51.19 MFDPDMFDTTHHHMLDMAFNTSENEMENVRDDDFETKSGAEILEAACGGSDQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFWFQNKRTQMKAQHERHENAILKAENEKLRAENIRYREAFAHSTCPNCGSSTALGEMSFEDQHLRIENSRLRDEIDRMSGYGPKCVAKPLPSSYYHLPSNAPTRSLDLGITNFGQQSGFVGEMYGAADFLRSISRPSEADKPVIVELAVSAMEELTRMAQAGEPLWVPADNKSTELLLNEAEYLTSFRGGIGPKPLGLRTEASRVSAIVFMNHIKLVDIFMDATQWSTVFCGIVSRASTVEVLSAGLPGNCNGALHVMSAEFQVPSPLVPTRENYFVRYCKQHNDGTWAVADVSLDSLRPSPIPKSRRRPSGCLIQELPNGYSKITWVEHVEVDETGVPTMYRPLVNSALAFGAKRWVATLDRQCERLATSMATTITTGELRVISSIEGRKSMLKLAERMVTSFCAGVGASSVHAWTALPAAGSDDVRVVTRKSTDEPGRPPGVVLSAATSFWIPVPPKVVFDFLRKEKSRSEWDILSNGGLVQEMAHIANGRHSGNCVSLLRVNSVNSSQSNMLILQESCTDSTGSYVIYAPVDTVAMNVVLSGCDPDYVALLPSGFAILPDGPAGSNGGGILEVGSGGSLITVAFQILVDSVPTARLSIGSVATVNSLIKCTVERIRAAVMRENP 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3811227 3816961 + Maker00011618 Lcy1g0431 622343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0431 727 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lcy1g0431 727 Gene3D - 295 474 IPR023393 -
Lcy1g0431 727 SUPERFAMILY Bet v1-like 239 468 - -
Lcy1g0431 727 ProSiteProfiles START domain profile. 237 470 IPR002913 GO:0008289(InterPro)
Lcy1g0431 727 SMART HOX_1 54 117 IPR001356 GO:0003677(InterPro)
Lcy1g0431 727 FunFam Homeobox-leucine zipper protein HDG1 45 129 - -
Lcy1g0431 727 FunFam Homeobox-leucine zipper protein GLABRA 2 246 466 - -
Lcy1g0431 727 Pfam Homeodomain 56 111 IPR001356 GO:0003677(InterPro)
Lcy1g0431 727 SUPERFAMILY Homeodomain-like 46 113 IPR009057 -
Lcy1g0431 727 Gene3D - 46 129 - -
Lcy1g0431 727 Pfam START domain 247 467 IPR002913 GO:0008289(InterPro)
Lcy1g0431 727 Coils Coil 107 139 - -
Lcy1g0431 727 CDD homeodomain 55 114 IPR001356 GO:0003677(InterPro)
Lcy1g0431 727 CDD START_ArGLABRA2_like 241 466 - -
Lcy1g0431 727 SUPERFAMILY Bet v1-like 489 719 - -
Lcy1g0431 727 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677(InterPro)
Lcy1g0431 727 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 48 722 IPR042160 -
Lcy1g0431 727 SMART START_1 246 467 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0431 Lcy-Chr1:3811227 Lcy5g2008 Lcy-Chr5:43070878 1.21E-290 dispersed
Lcy1g0431 Lcy-Chr1:3811227 Lcy4g0564 Lcy-Chr4:6910018 0 wgd
Lcy1g0431 Lcy-Chr1:3811227 Lcy5g2007 Lcy-Chr5:43066244 1.92E-06 wgd
Lcy1g0431 Lcy-Chr1:3811227 Lcy8g1446 Lcy-Chr8:41124241 0 wgd
Lcy1g0431 Lcy-Chr1:3811227 Lcy9g1213 Lcy-Chr9:36514873 5.90E-123 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19516 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0431 K09338 - csv:101209093 1253.43