Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0432 ATGATCTCTTCACTGAGGCTTACTTCTTCCAATTTCACTTCCTCTGAACTTCTCAATCGAAAATCTCCGATTTCGAGGCCTAATCTTCCGTTGCAGTCGCTAAATTGCAGCGCCCTGAAACATCTCGATCGATCTATTTCTACCAACAAACCACTTCACATCTCGTCCGTTGAGGATCTTTCTTTGCCCACAAAACCGTCTGAGCGTTCAACGGAGTGCAGGGCGTACGAGGCCGAATCGCGGCCTCTTGAGATTAACATTGAGCTTCCCGATGAACAGACGGCTCAGAAACTCAAAATTGGGCTCTATTTCGCCACTTGGTGGGCTTTGAATGTGGTGTTCAATGTCTACAACAAGAAGGTTCTTAATGCGTTCCCTTATCCATGGCTCACTTCCACTCTCTCCCTCGCCGCTGGATCGCTCATGATGCTCGTTTCTTGGGCCACTAGAATGGTCGACGCTCCCAAAACTGATTTGGATTTCTGGAAATCCCTATTGCCGGTCGCAGTGGCGCATACCATCGGGCATGTTGCAGCAACTGTGAGCATGTCCAAAGTTGCAGTCTCATTCACTCACATAATCAAGAGTGGGGAGCCAGCTTTCAGCGTGTTGGTGTCAAGGTTTCTGTTGGGTGAGACGTTTCCATTGCCTGTTTACTTGTCTCTTATCCCAATCATTGGAGGCTGCGCTCTTTCCGCCATTACCGAGCTCAATTTCAACATGATCGGTTTCATGGGAGCGATGATATCGAACTTGGCGTTTGTGTTTAGAAACATATTCTCAAAGAAAGGGATGAAGGGAAAGTCAGTGAGTGGGATGAATTACTATGCTTGCCTCTCATTGCTGTCTCTGCTCATTCTCACTCCTTTCGCCATTGCTGTGGAGGGACCCAAGTTGTGGGCTGAAGGGTTCCAAAAGGCTCTCTCTCAAATTGGTCCCAATTTCATTTGGTGGCTGGGAGCTCAAAGTATGTTCTATCATTTGTACAATCAAGTGTCTTACATGTCACTTGATCAGATATCTCCATTGACATTCAGCGTAGGAAACACAATGAAGAGAATATTCGTAATAGTGTCGTCCATCATCATCTTCCACACGCCCGTCCGACCCATCAACGCCATTGGAGCTGCCATTGCAATCCTGGGAACCTTCCTCTACTCGCAGGCAAAGCTGTGA 1176 47.45 MISSLRLTSSNFTSSELLNRKSPISRPNLPLQSLNCSALKHLDRSISTNKPLHISSVEDLSLPTKPSERSTECRAYEAESRPLEINIELPDEQTAQKLKIGLYFATWWALNVVFNVYNKKVLNAFPYPWLTSTLSLAAGSLMMLVSWATRMVDAPKTDLDFWKSLLPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGETFPLPVYLSLIPIIGGCALSAITELNFNMIGFMGAMISNLAFVFRNIFSKKGMKGKSVSGMNYYACLSLLSLLILTPFAIAVEGPKLWAEGFQKALSQIGPNFIWWLGAQSMFYHLYNQVSYMSLDQISPLTFSVGNTMKRIFVIVSSIIIFHTPVRPINAIGAAIAILGTFLYSQAKL 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3821619 3823983 + Maker00011920 Lcy1g0432 622344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0432 391 SUPERFAMILY Multidrug resistance efflux transporter EmrE 140 234 - -
Lcy1g0432 391 SUPERFAMILY Multidrug resistance efflux transporter EmrE 284 388 - -
Lcy1g0432 391 PANTHER SOLUTE CARRIER FAMILY 35 96 390 IPR050186 GO:0005794(PANTHER)|GO:0015120(PANTHER)|GO:0015297(PANTHER)|GO:0071917(PANTHER)
Lcy1g0432 391 Pfam Triose-phosphate Transporter family 98 387 IPR004853 -
Lcy1g0432 391 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 98 390 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0432 Lcy-Chr1:3821619 Lcy6g1394 Lcy-Chr6:20446449 8.64E-188 dispersed
Lcy11g1868 Lcy-Chr11:42446244 Lcy1g0432 Lcy-Chr1:3821619 1.19E-108 transposed
Lcy1g0317 Lcy-Chr1:2801873 Lcy1g0432 Lcy-Chr1:3821619 5.30E-76 transposed
Lcy7g0333 Lcy-Chr7:2808804 Lcy1g0432 Lcy-Chr1:3821619 6.92E-68 transposed
Lcy1g0432 Lcy-Chr1:3821619 Lcy9g1211 Lcy-Chr9:36492485 1.56E-197 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0432 K15283 - csv:101216621 665.996